TCONS_00002511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002511
Unique NameTCONS_00002511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002511 ID=TCONS_00002511|Name=TCONS_00002511|organism=Clytia hemisphaerica|type=transcript|length=2377bp
AATGGACCCCTCTTTTGTTCTAAATGATAAAGAAAGCTTTTTAAATAATT
GTTAGACCGATTTGTATAGAGCGAgtaagagagagaaaaaaaagctATAT
AGTTGGAGTTTTTAATTGAGCTCTATTATAAAGAGTTTActcgagaagaa
aaaaaattaatcagtCTTTTAGGAAAAAGGCCGTATATAACTGAAGGGAA
TTTTAGAGAGAGTGCATTAGTTGAACAGGACACTTTCATGAGAACGACAA
GAGAAGCTACGAAACGATTTAACATTTGCACACACACAAATATCGacaca
acaacaaaacaacaagATGTTTGCGGGATCAGATCTCTCCAATAACGTTG
TTCCTGACCCAACTGCATACGCACAGGAAGCACTATCAATGGGCAGTATG
GATGAACAAAGTCTTTTCGATTCTTACGAAAACCAAAAAGTTCCTTCGGG
AAAGCCACCAAAGCTAACAGACAGTGACCCATGGTCTAAGAAGCGTTCAA
TCGAAAGcgattttgatgattttcataTACCACCAAAACGAGCTAATATG
tttgaaaatgaaactaaaCCTGAAATTCAACCTGAAGATGACAAGCGTGT
TATCGTACCTGCCGACCCCATGTGCTGGACCAACGAGCACGTCCGACAAT
GGGTCCAGTGGGCCATTAAAGAATTCAGCTTAAAAGATGTTGACGTTAAC
ACCTTTACAATGACGGGACAAGAATTATGTAAACTAACACGTGAAGAATT
CTTACGTCTAGCTCCCGCATACAACGGCGATATATTGATGGCGCATTTAT
GCGTCTTACGCAAAGCACCTTTACCAAATCTCACAACTGAAGATATCGAT
AAAGCCCTGGCCCCACCATTGAGTCACAATGCTAATAACGGCGCTAAAGT
GCCAAGTTATCCACGCACAGAAGCTGAAAAACGTCCTGCGTCGCCACCCG
TCGGTAGTTATTCCCGATCCGTGCCCGTTGCACGTGCCGATGGTTCGGAG
TATTTAACGAGCTGTGCTTACAACCAATCATCTTCGTCTTCATCCTCATC
GACTCCATCTTCATCGACAAACCGAGATTCAGTCGTCCCTTCAAAATCAT
TCGAATCACCCCCAACATCTCACAGTGagTACAACCCGTCATGTCCCTCA
CCTAAACCAGCATCTCTCCCACCGACGACATCACACGGCGGAAGCGGACA
AATCCAATTATGGCAATTCTTACTCGAACTCTTATCCGACCCATCACACG
CGAGTTTCATCGCATGGGAAGGTAACAACGGCGAATTCAAACTTACCGAC
CCCGACGAAGTTGCCCGACGATGGGGTGAACGTAAAAACAAACCCAACAT
GAACTACGACAAGTTATCGCGTGCTTTACGATATTATTACGATAAAAACA
TCATGACCAAAATTCACGGCAAACGATATGCATATAAATTCGACTTTCAA
GGACTTGCACAATTAAACCAACCAATTACCTCAGACGCCCAATTACACGC
CGCCCAAGCCGCAGCGGCTGCCTACAGAGGTGAATACCCATTCTACTCAC
CCTATGGACCACCACCCGCCCCAGGATCACCATACGGTTACCCATCGTCC
TCGTACCCACAATGCTATTCGTCAGTACAGTCGCCTAGCAACCAATACGG
ATATCCATGGGGACGCTCATCATACCCAACAAGTATGTACAGCCGACAAT
CATCGGCACCGTACTTTTAGAATGGATTGATTGACATGTTCTATAATCTT
TAATAATATATATTTCTATATATTCTTTTGACTGTTCTTTGTAACGTACG
CGTAACTGCCCTTCAACGTGCTCGTAATTTTGTTGTGTTACGAAATTACG
AGTTTTTTTagagaatttattttatttatattggTTTTTTACCAATGCTT
ACGTATTTTTCCTCTTAATTTTCCAGCGCAGTTTCTATCTGTTATTATGC
CttgagaattttgattttcagtatttgTGACAAAGGACCTCgaaatttcg
aaagttttttttgcgACCAAGTCGAAAACTTTGATATTTTACGAGATAAT
CTAAAATTTTACAGTTTCTTTCTGGTTTTGCGGTCCACATCAATTATAGc
atttattatattattatatattgttattattattgtttGACGCGACTTTT
TGTTTCAAGGTAAAAAGTCGATGGaccaaaaaagctaaaaattctATTGG
TGTATGAaaggtttatatttttattcttttatcctAAGTATTAAGAAGAT
GCATGTGTTTTTTGGAGATGTTTAATAAAAAACGAAAGATTTATTATTTG
TGACTTATAATTGATATTATtacatataaaaaaaacatttaaaaaataaa
taaaagttgaaaactttgtgtaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000020:543191..547982-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002511 ID=TCONS_00002511|Name=TCONS_00002511|organism=Clytia hemisphaerica|type=transcript|length=4792bp|location=Sequence derived from alignment at sc0000020:543191..547982- (Clytia hemisphaerica)
AATGGACCCCTCTTTTGTTCTAAATGATAAAGAAAGCTTTTTAAATAATT
GTTAGACCGATTTGTATAGAGCGAGTAAGAGAGAGAAAAAAAAGCTATAT
AGTTGGAGTTTTTAATTGAGCTCTATTATAAAGAGTTTACTCGAGAAGAA
AAAAAATTAATCAGTCTTTTAGGAAAAAGGCCGTATATAACTGAAGGGAA
TTTTAGAGAGAGTGCATTAGTTGAACAGGACACTTTCATGAGGTAACATC
TCAATTTAAAATATTTTTTTTTTTGGAATTTTTTTTCTTAATCTTTTTTA
TATAGGATATTCTTATAAAAAGATGACCTTAAATTTTTTATAAGATGATG
ATTTTTTTCTCATTTTTTCAATCCCTTGTGCAAACTGTTTTGGGACAAGG
GCTTGATAGAACATCACAGGGGGACCTGAAAGGGGAGGAGATGTCCATGC
AGTGTTTTTGACATTCAGGGAAAAAACAAAAAGATTGAAGATGAAAAAGG
TCACTTAAAAATTAATGATTTTTCTACACTTTTGAAGCTATAATAAGCTA
TTTTCTAACTTTTTACGGTGATAAAAATTTGATGGACCATTCATTTGCAT
TTGGGAAAGTGATTTTTAATGATTGACAAAAAAATGGGACAATTTGCTTT
TTTTTCTTAATTTTCAACTTCATTATTCTTAATTTACTTTTCTTTTTGAT
GGTACCTGCCAATTTAATTACTCTTGATAATTATTGGTACTGCTAACAAA
GAGAGAAGACAAAAAGCGGAGAATAGGTGGTAGAACAATAGAATTGTAAT
TAAGAAGACTCGATCGGAAATCAAATGACCAATTTAAATTTATGATCAAT
AGCATCCGTTAAAAATATTTTCCTTTCTTTTCAATACTATTGTTCTACTT
TCATCCGCTCATAAACGACTCTTTATTCTTCTCCTAATTAATAAAAGTCG
ATGAAGAGAATTAATTTAGTTACATTTCAAGCATTGTCGTCTAAGCATCA
AGGTCTAAAAAGCAAACATCAATTCAAACAACACATTAATTATAGACTGA
ATATTTATCTTATCTATAAATGATAAATTTCAGTATTATTTTTAATTGAT
CGTGTTCATGTATTGATAGCTATACCTTATACTTAGTACATTCGAAGTGA
TTACTGTATTTGGTTTTATATTGGTGTGGTTGTATAATTGGTTTCAATAT
TTTATCAACTCAATAGAACGACAAGAGAAGCTACGAAACGATTTAACATT
TGCACACACACAAATATCGACACAACAACAAAACAACAAGATGTTTGCGG
GATCAGATCTCTCCAATAACGTTGTTCCTGACCCAACTGCATACGCACAG
GTAAGGATAGAGAATTCTTAGTAATTAGCTATCTATTTTAGAAAATAATA
GGATATTTTTAATTGACTTGAAAATGTTTTTTCTACAGTAGGGTATCGAT
TTTAATATGTTGTTTTGATCAGTGAGACGCATGATCAATGAGACAAAAAA
CGTCTTTTTTATTAAATTTTTCTATTCACTTTTAAACTCAATTACTGTTA
GCTGGGAGTCTATCACGGGACGAAAAAATAAGGAAATTAAATCAACGCCT
ACTATAGAAGTTGAAAATGTTTTCAAAAATTCTCCCGTTTGCTTTTTTTA
TAATTTTGGCAGTTTCGGACATATCACGAAAAATAACCTCTCGAAAGTCA
TGCTTCAACTTGTAATAACCCAATTCAAAATATGATTACGTAAAGCACTT
ATTATGTTGAAATTGTTTTGTTTATTATATTATTCATGAATCGTTCAACA
AAATAATAAAAATTGAATAGAAAGAATAAAAGAAAATGATAGAGAAAAAA
AAATTTTCGAAAAGATAATTACTGTATTGAAACTATTATTAATTTTCTCT
TTAGTATTTTTGCGAAATAGTTAATGACGCTTGAAATCAAGAGGTTCTTT
AATTTTGAAATCAATTATATAGTGCATTAGGAGATCGAAAGACCGAAATT
TTGTGCAAAATAACAAAATTGTTTAAATAATTTTCATTTCTCTTTTGTAG
GAAGCACTATCAATGGGCAGTATGGATGAACAAAGTCTTTTCGATTCTTA
CGAAAACCAAAAAGTTCCTTCGGGAAAGCCACCAAAGCTAACAGACAGTG
ACCCATGGTCTAAGAAGCGTTCAATCGAAAGCGATTTTGATGATTTTCAT
ATACCACCAAAACGAGCTAATATGTTTGAAAATGAAACTAAACCTGAAAT
TCAACCTGAAGATGACAAGCGTGTTATCGTACCTGCCGACCCCATGTGCT
GGACCAACGAGCACGTCCGACAATGGGTCCAGTGGGCCATTAAAGAATTC
AGCTTAAAAGATGTTGACGTTAACACCTTTACAATGACGGGACAAGAATT
ATGTAAACTAACACGTGAAGAATTCTTACGTCTAGCTCCCGCATACAACG
GCGATATATTGATGGCGCATTTATGCGTCTTACGCAAAGGTATTGATGTG
TTCATTTTGTGTTTTTCTCATTTTTAAAATTGCCACTTTTTTTCATTGTC
AAGTGCTTTTTATTTGAATGGGTTTTTTTCAGTTGATTGTTTTTTTAAAG
AGAGTCGTTAGTGGTCTTCAAGTTAATTACAAATCATTATAAGAAAATAG
CTTCAAAGCACAAAATAACATTTTGAATGATAGAGAGCGGTCACATCAAA
TAAATGGTATTTAAAAACGGTCGAAAGTCTGATTTAATTGTCTATGTGGC
GATGACATAAATTTATCTTGTTAAAAAATAAGTGTTGCACAAATAAATAA
TATTATTTTTTTTGTATCATTTCATTTATAGCACCTTTACCAAATCTCAC
AACTGAAGATATCGATAAAGCCCTGGCCCCACCATTGAGTCACAATGCTA
ATAACGGCGCTAAAGTGCCAAGTTATCCACGCACAGAAGCTGAAAAACGT
CCTGCGTCGCCACCCGTCGGTAGTTATTCCCGATCCGTGCCCGTTGCACG
TGCCGATGGTTCGGAGTATTTAACGAGCTGTGCTTACAACCAATCATCTT
CGTCTTCATCCTCATCGACTCCATCTTCATCGACAAACCGAGATTCAGTC
GTCCCTTCAAAATCATTCGAATCACCCCCAACATCTCACAGTGGTAAGGA
CATTTTCCTCCATACTATAATTTTGTATAAGGTGGCGTTGATTTTTCCTT
GAGGCTAAATTCTCACGTAGTTCTATTTTTTTTTTGCCTAATACTTCAAG
CTTCAAGTACTCATACTTCTAAAAAACTTCTGACTGTTTCTTAATGTTGA
CGTCAGCAAAAAAAATCTTGAAAAATTTGTTATGATAACACAAGTATCTA
ATTGCCCGCCTTCTATTTTGTCATTTAAAAAATTTCAACAAAAAAAATGT
TTTCCTTACTGAAGCTTCTTAAGTCCAACTAAGAATGATAACAAGCAAAC
TTAAGTGTGGAAATCTACTCTTAAAACTCATAACACATCACATCAAAAAT
TACAAAAATTTATAACAGAATTTCTCTTTTTTTTTTCAACAGAGTACAAC
CCGTCATGTCCCTCACCTAAACCAGCATCTCTCCCACCGACGACATCACA
CGGCGGAAGCGGACAAATCCAATTATGGCAATTCTTACTCGAACTCTTAT
CCGACCCATCACACGCGAGTTTCATCGCATGGGAAGGTAACAACGGCGAA
TTCAAACTTACCGACCCCGACGAAGTTGCCCGACGATGGGGTGAACGTAA
AAACAAACCCAACATGAACTACGACAAGTTATCGCGTGCTTTACGATATT
ATTACGATAAAAACATCATGACCAAAATTCACGGCAAACGATATGCATAT
AAATTCGACTTTCAAGGACTTGCACAATTAAACCAACCAATTACCTCAGA
CGCCCAATTACACGCCGCCCAAGCCGCAGCGGCTGCCTACAGAGGTGAAT
ACCCATTCTACTCACCCTATGGACCACCACCCGCCCCAGGATCACCATAC
GGTTACCCATCGTCCTCGTACCCACAATGCTATTCGTCAGTACAGTCGCC
TAGCAACCAATACGGATATCCATGGGGACGCTCATCATACCCAACAAGTA
TGTACAGCCGACAATCATCGGCACCGTACTTTTAGAATGGATTGATTGAC
ATGTTCTATAATCTTTAATAATATATATTTCTATATATTCTTTTGACTGT
TCTTTGTAACGTACGCGTAACTGCCCTTCAACGTGCTCGTAATTTTGTTG
TGTTACGAAATTACGAGTTTTTTTAGAGAATTTATTTTATTTATATTGGT
TTTTTACCAATGCTTACGTATTTTTCCTCTTAATTTTCCAGCGCAGTTTC
TATCTGTTATTATGCCTTGAGAATTTTGATTTTCAGTATTTGTGACAAAG
GACCTCGAAATTTCGAAAGTTTTTTTTGCGACCAAGTCGAAAACTTTGAT
ATTTTACGAGATAATCTAAAATTTTACAGTTTCTTTCTGGTTTTGCGGTC
CACATCAATTATAGCATTTATTATATTATTATATATTGTTATTATTATTG
TTTGACGCGACTTTTTGTTTCAAGGTAAAAAGTCGATGGACCAAAAAAGC
TAAAAATTCTATTGGTGTATGAAAGGTTTATATTTTTATTCTTTTATCCT
AAGTATTAAGAAGATGCATGTGTTTTTTGGAGATGTTTAATAAAAAACGA
AAGATTTATTATTTGTGACTTATAATTGATATTATTACATATAAAAAAAA
CATTTAAAAAATAAATAAAAGTTGAAAACTTTGTGTAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001343XLOC_001343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002511-exon-sc0000020-1575043694:547741..547982TCONS_00002511-exon-sc0000020-1575043694:547741..547982Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1575043694:546633..546766TCONS_00002511-exon-sc0000020-1575043694:546633..546766Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1575043694:545494..545932TCONS_00002511-exon-sc0000020-1575043694:545494..545932Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1575043694:544840..545151TCONS_00002511-exon-sc0000020-1575043694:544840..545151Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1575043694:543191..544440TCONS_00002511-exon-sc0000020-1575043694:543191..544440Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1510915933:547741..547982TCONS_00002511-exon-sc0000020-1510915933:547741..547982Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1510915933:546633..546766TCONS_00002511-exon-sc0000020-1510915933:546633..546766Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1510915933:545494..545932TCONS_00002511-exon-sc0000020-1510915933:545494..545932Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1510915933:544840..545151TCONS_00002511-exon-sc0000020-1510915933:544840..545151Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1510915933:543191..544440TCONS_00002511-exon-sc0000020-1510915933:543191..544440Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1491911889:547741..547982TCONS_00002511-exon-sc0000020-1491911889:547741..547982Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1491911889:546633..546766TCONS_00002511-exon-sc0000020-1491911889:546633..546766Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1491911889:545494..545932TCONS_00002511-exon-sc0000020-1491911889:545494..545932Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1491911889:544840..545151TCONS_00002511-exon-sc0000020-1491911889:544840..545151Clytia hemisphaericaexon
TCONS_00002511-exon-sc0000020-1491911889:543191..544440TCONS_00002511-exon-sc0000020-1491911889:543191..544440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:543191..547982 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294557	0.177417	0	0.12689	55.9403	51.7662	41.168	51.2419	30.203	41.9691	24.5155	71.3686	115.528	105.178	186.681	141.688	43.0226	69.7374	22.2414	20.0359	7.80892	8.48649	2.50327	4.74132	2.73473	3.83536	11.6986	2.12995	8.07744	5.34926
Blast
[Close]
BLAST of TCONS_00002511 vs. Swiss-Prot (Human)
Match: ERG (Transcriptional regulator ERG OS=Homo sapiens GN=ERG PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 8.968e-89
Identity = 165/330 (50.00%), Postives = 212/330 (64.24%), Query Frame = 2 
Query:  506 SDFDDFHIPPKRANMFENETKPEIQPEDDKRVIVPADPMCWTNEHVRQWVQWAIKEFSLKDVDVNTF-TMTGQELCKLTREEFLRLAPAYNGDILMAHLCVLRKAPLPNLTTEDIDKAL--APPLSHNANNGAKVPSYPRT----EAEKRPASPPVGSYSRSVPVARADGSEYLTSCAYNQXXXXXXXXXXXXXXNRDSVVPSKSFESPPTSHSEYNPSCPSPKPASLPPTTSHGGSGQIQLWQFLLELLSDPSHASFIAWEGNNGEFKLTDPDEVARRWGERKNKPNMNYDKLSRALRYYYDKNIMTKIHGKRYAYKFDFQGLAQLNQP 1474
            S  ++ H+PP   NM  NE          +RVIVPADP  W+ +HVRQW++WA+KE+ L DV++  F  + G+ELCK+T+++F RL P+YN DIL++HL  LR+ PLP+LT++D+DKAL  +P L H  N G     +P T    EA +R  + P   Y    P  R+  + +      ++++  S S+ P +   R  + P +     PTS    NP                 GSGQIQLWQFLLELLSD S++S I WEG NGEFK+TDPDEVARRWGERK+KPNMNYDKLSRALRYYYDKNIMTK+HGKRYAYKFDF G+AQ  QP
Sbjct:  113 SYMEEKHMPP--PNMTTNE----------RRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRPDLPYE---PPRRSAWTGHGHPTPQSKAAQPSPSTVPKTEDQRPQLDPYQILG--PTSSRLANP-----------------GSGQIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQP 408
The following BLAST results are available for this feature:
BLAST of TCONS_00002511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERG8.968e-8950.00Transcriptional regulator ERG OS=Homo sapiens GN=E... [more]
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