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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002520 ID=TCONS_00002520|Name=TCONS_00002520|organism=Clytia hemisphaerica|type=transcript|length=1788bp
CCCAGCATTCCTTGTGATTTAGTCATACTGCAATATATTCTTGCAGAATC
TATCCACACACCTTCGCTTCACACCTTCGATACAATTTAATTATAAAGCT
GGAAGTAAAAAAttcttggtttgccgtcacccgaacctagattttggagg
tgggtcagtcggtcggaaattttttttattctggtcattcatggaatttt
tgtcaatattttgtgatttttgaagaaaaaagattcTCTTCGTCGAAAta
gtaataaaagtttttgggtcGGCAAATCTAGAGAAGAGTAGGTCGGCTgc
tgacggcaaaccaacattgTTTAAGTCCAGCCTAACGGTGCACTATCGAT
AACCAGGTCAGAATACTACACTCTCTCAAATATATAcatttcatcatttt
catcaaaacggTTTCGGCAATCGACCCAATGTGCGTTTCCCATAATACAA
ACAAGataaaaccaaataaaaaccAATCTCAATCACTGATATAAAAGATG
CacccaaaacgaggctaatCAAACCTCCAATTTTCCCTGCAACATGATCC
AGAGTATGTAATTGTTTTTCTTCAATCATCTGATAAGAGTCGATACTGGA
ATATTGGATATCTAACCGGTATCGATTCTGACCACCAGGGCTGTTCGGTG
GATTATCGTAGGACAGTAAACGGGTCATATACTCTGTTTCTTCACACGGG
AATGGACAATTCACACCAGACTGGACTTGTGCGCTTTCTTGTTGAACACA
TTGTAGTACTTCCAGTATGGTACGATTCTGTCGGTAAAGCCGTACGTAGT
CTTCGGGAATGTATTTTTTAAAGTAATCGAAAATATCACCGCATTTTTTA
AACGTGCGTAAGTACGTAGATGATTCGAGGCATGTTCTACGTGTGTATTT
CCCAGGGAAAATATCGTTGAATTTCTCAGAGGTGCACTTTGAAGGGAACG
GCGGCGGTAGACGTTTTATGATGGTTTTCCTGATATTAAATTCGAAGGAT
TTCGACGTCTCCAAAACGAAGCGATTTGTTAAATCGAATTCAACGCCTAT
TTGCGGATCGTGAACGATTGCGACGATGAACGGAGTACGTTTCAATGCCG
TTGTATTGATCTGGAATTCGATATGCGCATGTGCGTACGCATCTGATAAA
TCACCGTTATGATTCAAAGTCACGCACGAGTGATCAAACTGGGCAAGAGA
TTTTAAATAGACATCATTAGTACATGTTTTGCCACCCCATGTATAACAAG
CAAGGACGTGAAAAATACCGTTACTCCATTGTCCAGTTATGTTTAAAATG
TTCGATCGAGGTTTTGGAGGACGTATTTCTTCCATACACGGCTGCCGATA
GTTGTCATATCTTTGACCTTGTTTTTTGTTGCAGTATGAGAAATATTGTT
GAATCATGGATCGTAAATCACATACCGTGATACTTGGGAATGGATTTTCA
ACTTGTAGTGATGTTGTCACTTCAGCGTATATGTGATATTCCAAATAGTT
GGTTACTATGGAATAAGTCAGCCATGTTGAAGCTAAAATGGCACATATGA
CAATGATGGTCCAAAGGCAAGATTCAATCCGTGACTCGGAGGAGATACGA
GCCAACCCATGAACGGTAGAGGAATCAAGATATTCTCTGCGTTTGTTATT
GATTAGTTTTCGTGAGAATCGGAGAGATTTTCGAGGTGTATCGGGTGGGT
TGTTGTTTTGGTTGTCATGGTTACCACCATCTTTGCTGTGCTCTTTACCA
AAGTATCCTGTTAgatgaaggaaaaaaaacatcatGAA Run BLAST on NCBI transcript from alignment at sc0000020:695965..698666- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002520 ID=TCONS_00002520|Name=TCONS_00002520|organism=Clytia hemisphaerica|type=transcript|length=2702bp|location=Sequence derived from alignment at sc0000020:695965..698666- (Clytia hemisphaerica)
CCCAGCATTCCTTGTGATTTAGTCATACTGCAATATATTCTTGCAGAATC
TATCCACACACCTTCGCTTCACACCTTCGATACAATTTAATTATAAAGCT
GGAAGTAAAAAATTCTTGGTTTGCCGTCACCCGAACCTAGATTTTGGAGG
TGGGTCAGTCGGTCGGAAATTTTTTTTATTCTGGTCATTCATGGAATTTT
TGTCAATATTTTGTGATTTTTGAAGAAAAAAGATTCTCTTCGTCGAAATA
GTAATAAAAGTTTTTGGGTCGGCAAATCTAGAGAAGAGTAGGTCGGCTGC
TGACGGCAAACCAACATTGTTTAAGTCCAGCCTAACGGTGCACTATCGAT
AACCAGGTCAGAATACTACACTCTCTCAAATATATACATTTCATCATTTT
CATCAAAACGGTTTCGGCAATCGACCCAATGTGCGTTTCCCATAATACAA
ACAAGATAAAACCAAATAAAAACCAATCTCAATCACTGATATAAAAGATG
CACCCAAAACGAGGCTAATCAAACCTCCAATTTTCCCTGCAACATGATCC
AGAGTATGTAATTGTTTTTCTTCAATCATCTGATAAGAGTCGATACTGGA
ATATTGGATATCTAACCGGTATCGATTCTGACCACCAGGGCTGTTCGGTG
GATTATCGTAGGACAGTAAACGGGTCATATACTCTGTTTCTTCACACGGG
AATGGACAATTCACACCAGACTGGACTTGTGCGCTTTCTTGTTGAACACA
TTGTAGTACTTCCAGTATGGTACGATTCTGTCGGTAAAGCCGTACGTAGT
CTTCGGGAATGTATTTTTTAAAGTAATCGAAAATATCACCGCATTTTTTA
AACGTGCGTAAGTACGTAGATGATTCGAGGCATGTTCTACGTGTGTATTT
CCCAGGGAAAATATCGTTGAATTTCTCAGAGGTGCACTTTGAAGGGAACG
GCGGCGGTAGACGTTTTATGATGGTTTTCCTGATATTAAATTCGAAGGAT
TTCGACGTCTCCAAAACGAAGCGATTTGTTAAATCGAATTCAACGCCTAT
TTGCGGATCGTGAACGATTGCGACGATGAACGGAGTACGTTTCAATGCCG
TTGTATTGATCTGGAATTCGATATGCGCATGTGCGTACGCATCTGATAAA
TCACCGTTATGATTCAAAGTCACGCACGAGTGATCAAACTGGGCAAGAGA
TTTTAAATAGACATCATTAGTACATGTTTTGCCACCCCATGTATAACAAG
CAAGGACGTGAAAAATACCGTTACTCCATTGTCCAGTTATGTTTAAAATG
TTCGATCGAGGTTTTGGAGGACGTATTTCTTCCATACACGGCTGCCGATA
GTTGTCATATCTTTGACCTTGTTTTTTGTTGCAGTATGAGAAATATTGTT
GAATCATGGATCGTAAATCACATACCGTGATACTTGGGAATGGATTTTCA
ACTTGTAGTGATGTTGTCACTTCAGCGTATATGTGATATTCCAAATAGTT
GGTTACTATGGAATAAGTCAGCCATGTTGAAGCTAAAATGGCACATATGA
CAATGATGGTCCAAAGGCAAGATTCAATCCGTGACTCGGAGGAGATACGA
GCCAACCCATGAACGGTGGAGGAATCAAGATATTCTCTGCGTTTGTTATT
GATTAGTTTTCGTGAGAATCGGAGAGATTTTCGAGGTGTATCGGGTGGGT
TCTNCGTACGTAGTCTTCGGGAATGTATTTTTTAAAGTAATCGAAAATAT
CACCGCATTTTTTAAACGTGCGTAAATACGTAGATGATTCGAGGCATGTT
CTACGTGTGTATTTCCCAGGGAAAATATCGTTGAATTTCTCAGAGGTGCA
CTTTGAAGGGAACGGCGGCGGTAGACGTTTTATGATGGTTTTCCTGATAT
TAAATTCGAAGGATTTCGACGTCTCCAAAACGAAGCGATTTGTTAAATCG
AATTCAACGCCTATTTGCGGATCGTGAACGATTGCGACGATGAACGGAGT
ACGTTTCAATGCCGTTGTATTGATCTGGAATTCGATATGCGCATGTGCGT
ACGCATCTGATAAATCACCGTTATGATTCAAAGTCACGCACGAGTGATCA
AACTGGGCAAGAGATTTTAAATAGACATCATTAGTGCATGTTTTGCCACC
CCATGTATAACAAGCAAGGACGTGAAAAATACCGTTACTCCATTGTCCAG
TTATGTTTAAAACGTTCGATCGAGGTTTTGGAGGACGTATTTCTTCCATA
CACGGTTGCCGATAGTTGTCATATCTTTGGCCTTGTTTTTTGTTGCAGTA
TGAGAAATATTGTTGAATCATGGATCGTAAGTCACATACTGTAATACTTG
GGAATGGATTTTCGACTTGGAGTGATGTTGTCACTTCAGCGTATATATGA
TATTCCAAATAGTTGGTTACTATGGAGTAGGTCAGCCATGTTGAAGCTAA
AATGGCGCATATGACGATGATGCTCCAAAGGCAAGATTCAATCCGTGACT
CGGAGGAGATACGAGCCAACCCATGAACGGTAGAGGAATCAAGATATTCT
CTGCGTTTGTTATTGATTAGTTTTCGTGAGAATCGGAGAGATTTTCGAGG
TGTATCGGGTGGGTTGTTGTTTTGGTTGTCATGGTTACCACCATCTTTGC
TGTGCTCTTTACCAAAGTATCCTGTTAGATGAAGGAAAAAAAACATCATG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002520-exon-sc0000020-1575043694:697101..698666 | TCONS_00002520-exon-sc0000020-1575043694:697101..698666 | Clytia hemisphaerica | exon |
| TCONS_00002520-exon-sc0000020-1575043694:695965..696186 | TCONS_00002520-exon-sc0000020-1575043694:695965..696186 | Clytia hemisphaerica | exon |
| TCONS_00002520-exon-sc0000020-1510915933:697101..698666 | TCONS_00002520-exon-sc0000020-1510915933:697101..698666 | Clytia hemisphaerica | exon |
| TCONS_00002520-exon-sc0000020-1510915933:695965..696186 | TCONS_00002520-exon-sc0000020-1510915933:695965..696186 | Clytia hemisphaerica | exon |
| TCONS_00002520-exon-sc0000020-1491911889:697101..698666 | TCONS_00002520-exon-sc0000020-1491911889:697101..698666 | Clytia hemisphaerica | exon |
| TCONS_00002520-exon-sc0000020-1491911889:695965..696186 | TCONS_00002520-exon-sc0000020-1491911889:695965..696186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:695965..698666 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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