TCONS_00002565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002565
Unique NameTCONS_00002565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002565 ID=TCONS_00002565|Name=TCONS_00002565|organism=Clytia hemisphaerica|type=transcript|length=589bp
AACTGATCGTGATTATACGTATTTTATAATTGTCTTGTGTTGAATCTTTT
CGGGTGTTTATTCCATGCAGTgttgagtctttctttgaagactttgactG
TCTTTGCCTCAGCGACATCTTTTGGCAATTTATTCCAGGTTGGtatagtt
cgataaaagaagGAATTCGTTTGTACACCACGGAGTCCATCGCTTCCAAA
GTTTGGAATCATCTCAAAGTTGTGCCTTCTGTTTGGTCCCGTTCGACGGG
CTATCTTGTTTGGGATGGTATCTTTTTCGTAATAGTTGATGTGCTTGTAA
AGTTGGACCATGTCACAAAAGTGCCTTCTAAACTCGAGCGTAGGAAGATC
TAATTCACGCAATCGTTCTTCATAAGACATATCacgacatttttgaaaaa
gttttgttgCCCGTCTTTGTACTCCTTCAATGAGATTTACGTGTTTACGT
AGAAACGGAGACCATACTGACTGAGCGTACTCCAGATGCGGGCGAACAAA
CGCACAATACAATGTTTTAAATGTACTTGTACTCATATTTACAAATCCTC
GATTGATTATGCCAAGTATCGCGTTTGCTTTTTTGACTT
Run BLAST on NCBI

protein sequence of TCONS_00002565-protein

>TCONS_00002565-protein ID=TCONS_00002565-protein|Name=TCONS_00002565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
VKKANAILGIINRGFVNMSTSTFKTLYCAFVRPHLEYAQSVWSPFLRKHV
NLIEGVQRRATKLFQKCRDMSYEERLRELDLPTLEFRRHFCDMVQLYKHI
NYYEKDTIPNKIARRTGPNRRHNFEMIPNFGSDGLRGVQTNSFFYRTIPT
WNKLPKDVAEAKTVKVFKERLNTAWNKHPKRFNTRQL
Run BLAST on NCBI

transcript from alignment at sc0000020:611205..611793

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002565 ID=TCONS_00002565|Name=TCONS_00002565|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0000020:611205..611793 (Clytia hemisphaerica)
AAGTCAAAAAAGCAAACGCGATACTTGGCATAATCAATCGAGGATTTGTA
AATATGAGTACAAGTACATTTAAAACATTGTATTGTGCGTTTGTTCGCCC
GCATCTGGAGTACGCTCAGTCAGTATGGTCTCCGTTTCTACGTAAACACG
TAAATCTCATTGAAGGAGTACAAAGACGGGcaacaaaactttttcaaaaa
tgtcgtGATATGTCTTATGAAGAACGATTGCGTGAATTAGATCTTCCTAC
GCTCGAGTTTAGAAGGCACTTTTGTGACATGGTCCAACTTTACAAGCACA
TCAACTATTACGAAAAAGATACCATCCCAAACAAGATAGCCCGTCGAACG
GGACCAAACAGAAGGCACAACTTTGAGATGATTCCAAACTTTGGAAGCGA
TGGACTCCGTGGTGTACAAACGAATTCcttcttttatcgaactataCCAA
CCTGGAATAAATTGCCAAAAGATGTCGCTGAGGCAAAGACagtcaaagtc
ttcaaagaaagactcaacACTGCATGGAATAAACACCCGAAAAGATTCAA
CACAAGACAATTATAAAATACGTATAATCACGATCAGTT

Coding sequence (CDS) from alignment at sc0000020:611205..611793

>TCONS_00002565 ID=TCONS_00002565|Name=TCONS_00002565|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000020:611205..611793 (Clytia hemisphaerica)
GTCAAAAAAGCAAACGCGATACTTGGCATAATCAATCGAGGATTTGTAAA
TATGAGTACAAGTACATTTAAAACATTGTATTGTGCGTTTGTTCGCCCGC
ATCTGGAGTACGCTCAGTCAGTATGGTCTCCGTTTCTACGTAAACACGTA
AATCTCATTGAAGGAGTACAAAGACGGGcaacaaaactttttcaaaaatg
tcgtGATATGTCTTATGAAGAACGATTGCGTGAATTAGATCTTCCTACGC
TCGAGTTTAGAAGGCACTTTTGTGACATGGTCCAACTTTACAAGCACATC
AACTATTACGAAAAAGATACCATCCCAAACAAGATAGCCCGTCGAACGGG
ACCAAACAGAAGGCACAACTTTGAGATGATTCCAAACTTTGGAAGCGATG
GACTCCGTGGTGTACAAACGAATTCcttcttttatcgaactataCCAACC
TGGAATAAATTGCCAAAAGATGTCGCTGAGGCAAAGACagtcaaagtctt
caaagaaagactcaacACTGCATGGAATAAACACCCGAAAAGATTCAACA
CAAGACAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001384XLOC_001384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002565-proteinTCONS_00002565-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002565-exon-sc0000020-1491911889:611205..611793TCONS_00002565-exon-sc0000020-1491911889:611205..611793Clytia hemisphaericaexon
TCONS_00002565-exon-sc0000020-1510915933:611205..611793TCONS_00002565-exon-sc0000020-1510915933:611205..611793Clytia hemisphaericaexon
TCONS_00002565-exon-sc0000020-1575043694:611205..611793TCONS_00002565-exon-sc0000020-1575043694:611205..611793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:611205..611793 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.02737	3.01809	4.84703	5.44263	3.16781	2.02365	3.12778	2.00046	1.08179	2.33297	2.44813	1.4302	1.67172	1.75998	0.897554	1.92395	1.64747	1.08457	0.996188	1.88399	1.15983	2.58049	1.14051	1.02359	2.959	2.78505	1.0421	1.23657	1.49753	0.532541
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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