TCONS_00002608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002608
Unique NameTCONS_00002608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002608 ID=TCONS_00002608|Name=TCONS_00002608|organism=Clytia hemisphaerica|type=transcript|length=1251bp
TAACATCATTGGACACGTCTTGTACGTCATATTCTCCAGCAGCACTTATG
TCCTCAACTCCATCGTCTCCATGATCATTTTTTTCACCACGCTCTTCTAC
TTGTTAAGCTCATCTAAAGACGAATACAAACTCTTAGAATGGTTAACTCA
AGTTAGCATGGGGACGAGGCTAGGTGAATCTATTAACAATGCTGTACAAG
AGGTCTTTGGAGCTTCATTGAAGATGGCATGTTTTTATGGTGTTTACACG
TGGATTACGCATAGTGTGTTTGGAGCAAATCTTGTCTTTATACCTTCAGC
ATTGGCTGCCTTGTTGGGAGTTGTACCCTTTATTGGGACCTATTGGGCTG
CCATACCAGCTTGTCTTGAACTCTTGTTTATACAAAATGATCAAATGAGA
GCTGTGTCGCTTATCGTTGCTCATTTTGTACCTACTTATGTGGTGGATAC
AGCTATCTACAGTGAAATTGGCATCCATCCATACTTGACAGCTCTGGCAG
TAGCTGGAGGTGTCATCTATCTTGGGTTAGAAGGTGCATTTGTTGGTCCA
TTTGNTTATCCGTAACATCAAGCTCTGCACCAGACTTGTACAGTTCCACT
GAAGACGTCGTCAAAACAGATACACCATCAGAACAACAGCAACCAGGACG
GTTATCATTCGTCTggaaagtgtattcttatttgAGTATATCCAAACTGA
CCAATATCTTTTGGCAAAACATGCATACAATGAATTCGGTAATGGATTCC
ATATTTGTCATAGTGAAAGGGAACGCCAGTCTGGTCATCAACATCATTGG
ACACGTCTTGTACGTCATCTTCTCCAGCAGTACTTATGTCCTCAACTCCA
TCGTCTCCATGATCATTTTTTTCACCACGCTCTTCTATTTGTTAAGCTCA
TCTAAAGACGAATACAAACTCTTAGAATGGTTAACTCAAGTTAGCATGGG
AACGAGGCTAGGTGAATCTATTAACAATGCTGTACAAGAGGTCTTTGGAG
CTTCATTGAAGATGGCATGTTTTTATGGTGTTTACACGTGGATTACACAT
AGTGTGTTTGGAGCAAATCTTGTCTTTATACCTTCAGCATTGGCTGCCTT
GTTGGGAGTTGTACCCTTTATTGGGACCTATTGGGCTGCCATACCAGCTT
GTCTCGAACTCTTGTTTATACAAAATGATCAAATGAGAGCTGTGTCGCTT
ATCGTTGCTCATTTTGTACCTACTTATGTGGTAGATACAGCTATCTACAG
T
Run BLAST on NCBI

transcript from alignment at sc0000021:195386..201074+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002608 ID=TCONS_00002608|Name=TCONS_00002608|organism=Clytia hemisphaerica|type=transcript|length=5689bp|location=Sequence derived from alignment at sc0000021:195386..201074+ (Clytia hemisphaerica)
TAACATCATTGGACACGTCTTGTACGTCATATTCTCCAGCAGCACTTATG
TCCTCAACTCCATCGTCTCCATGATCATTTTTTTCACCACGCTCTTCTAC
TTGTTAAGCTCATCTAAAGACGAATACAAACTCTTAGAATGGTTAACTCA
AGTTAGCATGGGGACGAGGCTAGGTGAATCTATTAACAATGCTGTACAAG
AGGTCTTTGGAGCTTCATTGAAGATGGCATGTTTTTATGGTGTTTACACG
TGGATTACGCATAGTGTGTTTGGAGCAAATCTTGTCTTTATACCTTCAGG
TAAATAATATacctaccgtaagttggtctaatgtcgcaCTTTTTTCATCT
AATTCCGTCACTCTTCTTAAGAGATAAGAATAATAAGAGTTTTGgtatca
ctgattgaaaaaaggttttttcctCTCTAAGAtctaagcaaaaaaatata
gttttcaatcagcgattctgaCTTTCTCTAAAGACGGGTAACAGAATGAG
ATTAGGGATGTTGACAtcagaccaacttacggtactgaATCTTGTAGCAA
ACTGTATGAAAGAGAATTTAAGTTCTAGTTTTCAATCTTTGGTTAACATG
AATATATTAAAGGTCATTCTACTTTTATACACTCGTGACCTAATTTTATC
TCTTATCACTAGACAGGTGTATATTACTATGAACTTCCTTAGTTCTGTTG
TATTAGTCCGAAGGTTTATTCTGGGGTTGGTGAATATCGGATATTTTCGA
ACCGGACTTCCAAAAACCGACCATTGGAGAGACTAAATTATGAGGGGAAa
gttacccttagagagactaaatcGGCGAAATGTGAcccatttttcaactt
ttttgtttctCGTATCCTTAAGAGACCAAAAGAGCAGAAAACCCCGTCCC
TAGAGActatttcgattttttgttgGTTTTGTAAAACTTGGAAGACTTCA
AGAGACTTTttggaaagtaaaaaaaacgaCCTTTACCATCACCATCCGCA
CATACCAAGCACCTATTTTTACCCAGGTACCCGGATTTCTTCATTTCAGG
TGTTTCTATAACATTGATCAATAAACAACTGTGATGGATGAATTGtctaa
aactaaaaatatgACAATGTAATATCGTCCAAcgaaatttaccatttttc
acaTCTTTCAGCATTGGCTGCCTTGTTGGGAGTTGTACCCTTTATTGGGA
CCTATTGGGCTGCCATACCAGCTTGTCTTGAACTCTTGTTTATACAAAAT
GATCAAATGAGAGCTGTGTCGCTTATCGTTGCTCATTTTGTACCTACTTA
TGTGGTGGATACAGCTATCTACAGTGAAATTGGTAAGTACAATTTGTACC
ATCCCCAGAGACTAACAAAGATAGGTTTTCAATTATTTCGTTGGAGAGTG
TTAACACTCTCGGCAATTCTATGGATAAGGGTTTCTCTGATAAGACGATG
ACGGTGTTGACGAAGTTTCAATTGTCAAAATGGCAAACAAgttcaaaatt
cttaaaaataaagttgTGACAAGGGATAGagttaatgaaaataaaatttg
aatttaaatgtctgaaatattgataacTTCGTGAAATTCTAAATGATTTT
CAGTTTTTAGCTTTACTTTTCAATGTTTGATTTGCTCCTTATTGTCTTCA
TAATTATTGCCAATATTATTCCCCATCTAGGCATCCATCCATACTTGACA
GCTCTGGCAGTAGCTGGAGGTGTCATCTATCTTGGGTTAGAAGGTGCATT
TGTTGGTCCATTTGNTTATCCGTAACATCAAGCTCTGCACCAGACTTGTA
CAGTTCCACTGAAGACGTCGTCAAAACAGATACACCATCAGAACAACAGC
AACCAGGACGGTTATCATTCGTCTggaaagtgtattcttatttgAGTATA
TCCAAACTGACCAATATCTTTTGGCAAAACATGCATACAATGAATTCGGT
AtctactttaaattttttttgtcatgttTATCGTGTATTGCAATAAGTCA
CTATTATGTCTGTGGGATGTTAAATAGTACACACAATTTGAGAAGAGTTT
CGCTGGAACTTAGTGGGAAGGGTGCATTCTTTCGAGAAATTGTAATGTCT
ACTTTATCCGTTTATTTCGTCTTTCCCAtcctattttttctttttcttta
gaatTTTCTAAAGATTGAAATATCTTATGTGTGAGTTCATCTATATATTT
TTGCAGAAATCTATAAAAATCATCATTCTCCATTTATCATGCTCATTCTT
TACACACGCAGGTAATGGATTCCATATTTGTCATAGTGAAAGGGAACGCC
AGTCTGGTCATCAACATCATTGGACACGTCTTGTACGTCATCTTCTCCAG
CAGTACTTATGTCCTCAACTCCATCGTCTCCATGATCATTTTTTTCACCA
CGCTCTTCTATTTGTTAAGCTCATCTAAAGACGAATACAAACTCTTAGAA
TGGTTAACTCAAGTTAGCATGGGAACGAGGCTAGGTGAATCTATTAACAA
TGCTGTACAAGAGGTCTTTGGAGCTTCATTGAAGATGGCATGTTTTTATG
GTGTTTACACGTGGATTACACATAGTGTGTTTGGAGCAAATCTTGTCTTT
ATACCTTCAGGTAAATAATATacctaccgtaagttggtctaatgtcgcaC
TTTTTTCATCTAATTCCGTCACCATTCTTTAGAGGTAAGAAGGTTGGAAT
CActgattaaaaaaagttttttctctttGAGAGGTAGGCAAAGAAATATA
GTTTTCAATCAGCGAATCTGACTGTTTTATTATCCCGATCTCTTAAAGAC
GGGTAACGGAATTAGATGAGGAGTGTTGATATCAGACCAACTTGCGCTAA
CCGAACCTTGCAATAAAGCTATGTGAAAGGGAATTTGATTTTAGTTTTCA
ATATCTGGTAACACTCATGAATCTATTAAAGGTCATTTTACTTTTGCACG
TCTGAATCTTATCTCCTATCAACCTATGAATTCCATTCTTTCTGTGAAAT
ACGAAGATTTTTCCCGGGGGAGAATATCGGTTATTTGCGGACCGGActtc
cgaaaaccgacccttagagagactaaattATGAGGGGAAAGTTACAGGAA
CTAAATCGGCGAAATGTGacccatttttggacctacctccgggtgccccg
gtggaggtcctataaattaacccatgtccgttNNNNNNNNNNNNNNNNNN
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cattctgaatttttgtacaattattgtcacttttttcttattttcatctg
atgttaatcattaggtaggtccattcagcatgttgcttgttcaacttttt
tctttctcgTACCTTTAAGAGACCTTCGAGGCTATTTcgactttttgttg
tttttgtaaccCTTGGAATTCTTGGGACATTTTTTGTGGAGACTTTGGAA
TGCAAAAAACGACatttaccgtccgcacatacaaAGCACTTATTTTTTCC
CATGCTCCTCCCCTCCCGGATTTCTTCCCTTCAGATGTTTCCAATAAACA
ACTATGATAGATGAATTACCCCAACCTTAAACATAATACCATCCACCGAA
ATTTAACACTTTTCACATCTTTCAGCATTGGCTGCCTTGTTGGGAGTTGT
ACCCTTTATTGGGACCTATTGGGCTGCCATACCAGCTTGTCTCGAACTCT
TGTTTATACAAAATGATCAAATGAGAGCTGTGTCGCTTATCGTTGCTCAT
TTTGTACCTACTTATGTGGTAGATACAGCTATCTACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001414XLOC_001414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002608-exon-sc0000021-1491911889:195386..195684TCONS_00002608-exon-sc0000021-1491911889:195386..195684Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1510915933:195386..195684TCONS_00002608-exon-sc0000021-1510915933:195386..195684Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1575043694:195386..195684TCONS_00002608-exon-sc0000021-1575043694:195386..195684Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1491911889:196547..196717TCONS_00002608-exon-sc0000021-1491911889:196547..196717Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1510915933:196547..196717TCONS_00002608-exon-sc0000021-1510915933:196547..196717Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1575043694:196547..196717TCONS_00002608-exon-sc0000021-1575043694:196547..196717Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1491911889:197066..197333TCONS_00002608-exon-sc0000021-1491911889:197066..197333Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1510915933:197066..197333TCONS_00002608-exon-sc0000021-1510915933:197066..197333Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1575043694:197066..197333TCONS_00002608-exon-sc0000021-1575043694:197066..197333Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1491911889:197647..197995TCONS_00002608-exon-sc0000021-1491911889:197647..197995Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1510915933:197647..197995TCONS_00002608-exon-sc0000021-1510915933:197647..197995Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1575043694:197647..197995TCONS_00002608-exon-sc0000021-1575043694:197647..197995Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1491911889:200911..201074TCONS_00002608-exon-sc0000021-1491911889:200911..201074Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1510915933:200911..201074TCONS_00002608-exon-sc0000021-1510915933:200911..201074Clytia hemisphaericaexon
TCONS_00002608-exon-sc0000021-1575043694:200911..201074TCONS_00002608-exon-sc0000021-1575043694:200911..201074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:195386..201074 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.72199	10.848	33.9004	39.1995	1.30271	1.15746	2.51278	2.01156	3.8094	3.41427	5.16891	2.96533	4.38181	4.95312	6.30188	6.73399	5.63122	5.71806	7.63833	5.92214	4.57789	3.41175	3.11969	4.30691	11.2699	8.64593	0.468909	1.15564	1.27786	0.11881
Blast
[Close]
BLAST of TCONS_00002608 vs. Swiss-Prot (Human)
Match: TM245 (Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.804e-57
Identity = 107/182 (58.79%), Postives = 136/182 (74.73%), Query Frame = 2 
Query:   32 FSSSTYVLNSIVSMIIFFTTLFYLLSSSKDEYKLLEW---LTQVSM----GTRLGESINNAVQEVFGASLKMACFYGVYTWITHSVFGANLVFIPSALAALLGVVPFIGTYWAAIPACLELLFIQNDQMRAVSLIVAHFVPTYVVDTAIYSEI--GIHPYLTALAVAGGVIYLGLEGAFVGP 550
            F S T +LN ++S+IIF TTLFYLLSSS + YK ++W   LT +S        +G+S+  A++ VF ASLKMA FYG+YTW+TH++FG N+VFIPSALAA+LG VPF+GTYWAA+PA L+L   Q    +A+ L++ H +PTY VDTAIYS+I  G HPYLT LAVAGG  YLGLEGA +GP
Sbjct:  646 FYSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYLGLEGAIIGP 827

HSP 2 Score: 176.792 bits (447), Expect = 5.591e-48
Identity = 93/186 (50.00%), Postives = 135/186 (72.58%), Query Frame = 1 
Query:  715 QNMHTMNSVMDSIFVIVKGNASLVINIIGHVLYVIFSSSTYVLNSIVSMIIFFTTLFYLLSSSKDEYKLLEW---LTQVSMGTR----LGESINNAVQEVFGASLKMACFYGVYTWITHSVFGANLVFIPSALAALLGVVPFIGTYWAAIPACLELLFIQNDQMRAVSLIVAHFVPTYVVDTAIYS 1251
            +N+ T  S+++S+++++  N SL+   +  +L ++F S T +LN ++S+IIF TTLFYLLSSS + YK ++W   LT +S        +G+S+  A++ VF ASLKMA FYG+YTW+TH++FG N+VFIPSALAA+LG VPF+GTYWAA+PA L+L   Q    +A+ L++ H +PTY VDTAIYS
Sbjct:  611 ENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFYSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLIFHLLPTYFVDTAIYS 796
The following BLAST results are available for this feature:
BLAST of TCONS_00002608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2451.804e-5758.79Transmembrane protein 245 OS=Homo sapiens GN=TMEM2... [more]
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