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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002627 ID=TCONS_00002627|Name=TCONS_00002627|organism=Clytia hemisphaerica|type=transcript|length=565bp
AAGTAATCTCAGAAGAACAAACAAACATGAAGGTCATCATTTTCACCGCT
TTCTTGGCTGTTGCCGCCGCCCTTGAGGTTGGAACCCAAACTGGTACCAC
ACCACCAGCTGTCCCATGCCCAGACTCTCTCTGCAAAGGAAGAGCTGATG
GAAACTACGAATACTACTACTACAGCCGATACAACCCGCACTACTTCCTC
CAATGCTCCAACGGATTAGCTTACTGTCAAGCTTGCTGGCCATTGTCCTT
GGAATTCAGCGAACCATGCAACCAATGTTTGTACAACCGAAAAGACGAAT
GTGTCACCACACAACCCTGGGAACCAGCAACTACCTTCGAATGCCCAGAC
AAATGCCCAGCTCGTGGACCACACTTCAGCGGAAACATTGAAGACGATCA
CAACCCACACCAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGCA
TCGCTTGCCCAAAAGGATTACAATTCAATGAGAAATGGAACGCCTGTTTG
TACCAAGGAAAATACAAGACAGAACCAGAATCCCCACCAAAACactaaat
tatttcatttttttt Run BLAST on NCBI protein sequence of TCONS_00002627-protein >TCONS_00002627-protein ID=TCONS_00002627-protein|Name=TCONS_00002627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
VISEEQTNMKVIIFTAFLAVAAALEVGTQTGTTPPAVPCPDSLCKGRADG
NYEYYYYSRYNPHYFLQCSNGLAYCQACWPLSLEFSEPCNQCLYNRKDEC
VTTQPWEPATTFECPDKCPARGPHFSGNIEDDHNPHQYVACFHGQTVGCI
ACPKGLQFNEKWNACLYQGKYKTEPESPPKH Run BLAST on NCBI transcript from alignment at sc0000021:495511..501517+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002627 ID=TCONS_00002627|Name=TCONS_00002627|organism=Clytia hemisphaerica|type=transcript|length=6007bp|location=Sequence derived from alignment at sc0000021:495511..501517+ (Clytia hemisphaerica)
AAGTAATCTCAGAAGAACAAACAAACATGAAGGTCATCATTTTCACCGCT
TTCTTGGCTGGTAAGTACCTCTAGCAACTTTAAAGTAAAAAGtaattgat
tttcaaaagtagCCATTACTGAATTGATTAACTCATTTCGCAGATCACTG
ATTTTTGAAGgttgaaattttctaaattgaatTGTATAATTCATCTATAT
ATTTAATTCATCTAAATTTTTTAGTTGCCGCCACCCTCAAGGTTGGAACC
CAAACTGGTACCACACCACCAGCTGTCCCATGTCCAGGCTCTCTCTGTAG
AGGAAGAGCTGACGGAAACTACGAATACTATTACTACAGCCGATACAACC
CACACTACTTCCTCCAATGCTCCAACGGAATAGCTTACTGTGAAGCTTGC
TGGCCATTGTTCTTGGAATTCAGTGAACCATGCAACCAATGTTTGTACAA
CCGAAAAGACGAATGTTTCACCACACAACCATGGGAACCAGCNTACTACT
ACAGCCGATACAACCCACACTACTTCCTCCAATGCTCAAACGGATTAGCT
TACTGTCAAGCCTGCTGGCCATTGTCTTTGGAATTCAGCGAACCATGCAA
CCAATGTTTGTACAACCGAAAAGACGAATGTGTCACCACCCAACCATGGG
AACCAGCAACCACCTTCGAATGCCCAGACAAATGCCCAGCCCGTGGACCA
CACTTCAGCGGAAACATTGAAGATGACCACAACCCACATCAATACGTCGC
TTGCTTCCACGGACAAACTGTCGGATGCATCGCTTGCCCAAAAGGATTAC
AATTCAACGAGAATTGGAACGCCTGTTTGTACTAAGGAAAATACAAGACC
GAACCAGAATCCCCACCGAAACactaaattattttcattttttttattga
aagcgAAAATCTTTGTCTTTGTCTTTTTTCCACTCTTTCATCATCAGCTT
TGACTTTTTTAACTCTACCTACGCCTAATCTTCCTACTTTCTTTAAGTCT
AAATATTGTAATCTATAGAATTTTGGAACTATTTTAATTTTACGAAATAT
ATACCCGTAGTTTTGGTTGATTATTGCTTGTCTCTGATTTTTTTCGGTAA
CAGATAGACAGAGAGCCAGTAGGATCTGTAACATATTTCATAAAATCGAC
AAATCGTGGTTAAATTGGTTTTGGGATTTTAAAATGAAACTGTTATTAAG
Ggttccttgacacttttaaaaaaatacttttttcactaatagtttttaaa
tcaaatctgTTAAGGGTAATTAAGaaattaattacaaaaatgacgttatg
aactttaaaaagacgtcaataaaaaagttttaatttagAATCGaccttat
tgtttttttttttagttttccacaaaaaattgatctattcgaaaaaagtt
tttcaaatttgtgtATCAAACGTTACGACTATTTTGTAAGAAAAGTGGGA
cgaaaaattcgtcaaaaatcaCCATTTTCAAAATGCTGAGACAAAATTCA
AATATAGAATTTAAATGGTAAACACTTAGAGCATTTTAAAGTTGCGTGTC
CACTGGAAAAAATAGGTTCGTCGCGAATTTTGTTATTGCGATAAGCCGAA
AAAATAAgggataaaaatgaaaaagtttataTTCAGACGTATGTCTGGAT
TTAAATTTTGTCAACAGGTATTTGCgacgaactttttttttttcagtgga
cacCCAGCTTTTGCTTCACCAAACACTGAGCTTTGATTTTAACTCGGTAT
GTATGAAATCACGAAATTATAAGATGCTCCCATACTAAAGTCTATTgaaa
aaatgttattaaaataCCCAGCACCGGATCGAATGTCTAGTCGATAGTAT
TTTAGTAGATGTTTTCCTGTTGAATTTTTGTGTTTCTTTGAAGTCTAATA
GATACTAGGAAGATCCAAGTCCTTCTCAGAAACAGCAATCCCAAGGCGTT
TAgaaaaaccaacattttcaTATACAATCCCTGCTTTATcccgatcttca
agggaccatgCAGGGATTTATTCGAATTTGGGAAAACAAAATAAGATTCA
TGTTAAGAGCAtctgaaggtttcaaaaattttggatgttcttataaaaat
gaaatctgtctcaaaataatttgcagctggagacaaaaatggctgtaact
cttgatagaattcgaatcaagttgcgattttgtgctcgttaaaaagatat
tcatgaGTAGAATATTAtcaattcaaaaatttggaaaaaaaaggaaaatg
aaaaagaaaaatgaagaagaaaaaaatcaacttcttgtataaatgtggta
taattaccattttcacaggagtgatttttcaatcttagatcatcatcact
gtcaaaaaatctttcaaaaatattcattcaatcaaaagatatcaaacaaa
gtctattgctggttgactctatgaAGTagtaaaaaaacgacaaaagaaAC
AACCTTTTGAGAGGAGAGGAATCGAATGCACGCTTTCCTTTTGtaaaaat
ggtgtttttttttttcatttcatcatgggtATTCTTAACCTTTCAAGTGC
CAATGTCGTGTATATCGAAAtaggctatgtaggagggcgaagctgTAATT
GAGTTAGAACTCGTAGGaatttagtctgaatcgcagacctctacaaaacc
ccaggtagtagaggtctgcttaatgatctaccaaccgctttccggttcgc
aaaggaaatcttggcgagttaataatttgattgacattgatgtgtacgca
aaaacgatcgtttcgaacgttttattcaatggaatgtttacattcgaaat
tcgaatcccagacccgaaaaaataaaaagataaaaaataatctgatgcgc
gcattatgtacagtccccgtacagtctgtagatttatttttgacttttgc
ttttataagatatctggtaaatttatcaaaaattttccatcagctctttg
gtcgaagctcaaaaaatacaaatatgaacacaaaagtgaaagaaaacaac
cagaaacactccaatcttatcaaagaattgaagctaagtacctgaaaatg
aaaagatacaaaggccacacagtattaaaaagtgaaagtgccaaagctga
agaaaagttctttgtttgtttgttttaacatttaaaggcccttattgaag
gaacaacaaaactcccttttgtagaatcataaagaagtaatgtcagaaat
attcaatatgaggACCCCGAAAATGtaatacataactagaataccttgaa
ataatttgcaacatatctgtagaactgacaaaacaattatctggagccaa
agtgatcaacgaatccagtgtggtgAAACATtatacactcatacaagtcc
acattcaagcatcaaaatgtagttttatgaagcaaaattttgttggtgca
cacagaagatacatcagggcacttaaattcaataaatctaatttctcatc
ttttacaaaatctccacattaaacaagaaaggaggaagaaaacaagcaaa
cttccttctgcctactttttttcgaaatccaaatatattttccaatcttt
gATTGATTTGGTTCCTcatagaaaatttaaacattacgtaatgttatatt
tgtagacactcgccagctaaatatgtctttagccgtatatatATTTTGAT
CATAatctttaactttttcttataaaaaacgtgtattgtttTTAATTGTC
AGTCCCTGTATGAATTTTTATTAACAGCAAGATTCGTATTTTTTAATATG
GTTAATTGTTCACTTCTTTAACGCTATGAgaatatccaagctcaaaatta
aaaaaaatttacctcaacatgcaaagttctaaaattacaGAGCTTGATCT
CCCTAGAGAAttaaagtgcaaacccatgttttccaaaactttcctagctA
ACCCAGGGCAGCACAATAGAAATTAATAACAAGgagccttacaagatcta
aagccattaaaaacatccaaagattacaccaaagtccataaacaaGTTTG
CATGTATCACCatatgaccaaccatgttttcttgaaaaatgaactcgcct
ctgtttcttctttttcgtgttttcatgtaacagaaagctgtaTGTTCACT
GGCAAATAGTGGGTTACCCAATTTTTGTAGCAGAATTTCTCCACGCCATG
TAGATCGACCCTTACGACTTTAGCGAATAAGTTAGCGCAAGCAAGTGGAC
TGCATTCTGATCTGAGAAGGCAAATTGCTCAaaggagaccaggctgtaaa
ccagaacataaaatatcaaaaactagactgtgaaatagtttacagtctgg
atatccaggctagcttATACATCACTTTGTAAAAAGATAAACCCAACGAG
AAATCATATACCTCATCAATATTGTgactaaaatcaaaaatgagaaatca
GGACCCTAGCGGTTTgcatgatggcgtgattggggaTTTCTTTGGCGTGT
TGGCGTGATTTAAGATTTCAAAAAGCGTGCTAAAGAATTATTTTGGgcat
gatggcgtgattagaaaTGTTTTAGGTGTGATGGCATCATCAGCTTAAAT
GCTACCAAGAGACTACTTTCGATACCGTGTGATAACAATAGGCTAAGTTG
TAATCATGACCGCTGTCAATGAGGACAATGCTACATAGTGGTAGTGCTAC
Acgaggtttttttataagaacatccaaaatttttgaagccttcggatgtt
cttcaCTTTTTAGGTTttaagccttagaatgttcttagctCTTGTTCTTA
taacatttcggccatcgaagctttatattctgatacagtttgttctaata
aaagacgTGTATTTATTTCGCTGTTTCAAATACAAACATGGTCGAAGTAT
GAGGTTTTGTTTGATGGAAATGCGTTCGACCCGAAGGTTCAAGTTTGAGT
TTTTGATGACCCTTTGAGCTGAATCTTTTTGAAGACAACCCAAAATTGAG
CCTCGTATatatttgaattgtttttgtcTTCTATGAAGCCTTTGTTCTTG
ATTTTGCATTATCTAAAAAtcttcatgttttttttataaactgttttgat
gtatattCCTGATCAGGAAGTAAAGAAATTCCTCAGGCAGTTACATAAAG
CTAATTTCAATTAATAAACAAAACCAATTGCAATTAGAGTTCTTCCCATA
AAACGCCAGATAATTGGTTTACAAACAAATTACTCGAGATTTGTTTATTG
ATAAaggaaattgaatatttcataacacttttcaaagattttctttcGTA
TAAATAGACGTGAAAAGGTGGTAAAAATCATCATCTCAGATCTCAAGTAA
TCTCAGAAGAACAAACAAACATGAAGGTCATCATTTTCACCGCTTTCTTG
GCTGGTAAGTACTTCAAACAACTTTAAGAAAATAATGTCGTTGTATAAAA
GTATTGATTTTTAAGAGCAACCATTACTGAATTTATTAACTAATTTCGCA
GATCACTgaattttgaaggtttaaatTCATTGCAATAATCTTCATCTTTC
AGTTGCCGCCGCCCTTGAGGTTGGAACCCAAACTGGTACCACACCACCAG
CTGTCCCATGCCCAGACTCTCTCTGCAAAGGAAGAGCTGATGGAAACTAC
GAATACTACTACTACAGCCGATACAACCCGCACTACTTCCTCCAATGCTC
CAACGGATTAGCTTACTGTCAAGCTTGCTGGCCATTGTCCTTGGAATTCA
GCGAACCATGCAACCAATGTTTGTACAACCGAAAAGACGAATGTGTCACC
ACACAACCCTGGGAACCAGCAACTACCTTCGAATGCCCAGACAAATGCCC
AGCTCGTGGACCACACTTCAGCGGAAACATTGAAGACGATCACAACCCAC
ACCAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGCATCGCTTGC
CCAAAAGGATTACAATTCAATGAGAAATGGAACGCCTGTTTGTACCAAGG
AAAATACAAGACAGAACCAGAATCCCCACCAAAACactaaattatttcat
ttttttt Coding sequence (CDS) from alignment at sc0000021:495511..501517+ >TCONS_00002627 ID=TCONS_00002627|Name=TCONS_00002627|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000021:495511..501517+ (Clytia hemisphaerica)
GTAATCTCAGAAGAACAAACAAACATGAAGGTCATCATTTTCACCGCTTT
CTTGGCTGTTGCCGCCGCCCTTGAGGTTGGAACCCAAACTGGTACCACAC
CACCAGCTGTCCCATGCCCAGACTCTCTCTGCAAAGGAAGAGCTGATGGA
AACTACGAATACTACTACTACAGCCGATACAACCCGCACTACTTCCTCCA
ATGCTCCAACGGATTAGCTTACTGTCAAGCTTGCTGGCCATTGTCCTTGG
AATTCAGCGAACCATGCAACCAATGTTTGTACAACCGAAAAGACGAATGT
GTCACCACACAACCCTGGGAACCAGCAACTACCTTCGAATGCCCAGACAA
ATGCCCAGCTCGTGGACCACACTTCAGCGGAAACATTGAAGACGATCACA
ACCCACACCAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGCATC
GCTTGCCCAAAAGGATTACAATTCAATGAGAAATGGAACGCCTGTTTGTA
CCAAGGAAAATACAAGACAGAACCAGAATCCCCACCAAAACactaaGTAA
TCTCAGAAGAACAAACAAACATGAAGGTCATCATTTTCACCGCTTTCTTG
GCTGTTGCCGCCGCCCTTGAGGTTGGAACCCAAACTGGTACCACACCACC
AGCTGTCCCATGCCCAGACTCTCTCTGCAAAGGAAGAGCTGATGGAAACT
ACGAATACTACTACTACAGCCGATACAACCCGCACTACTTCCTCCAATGC
TCCAACGGATTAGCTTACTGTCAAGCTTGCTGGCCATTGTCCTTGGAATT
CAGCGAACCATGCAACCAATGTTTGTACAACCGAAAAGACGAATGTGTCA
CCACACAACCCTGGGAACCAGCAACTACCTTCGAATGCCCAGACAAATGC
CCAGCTCGTGGACCACACTTCAGCGGAAACATTGAAGACGATCACAACCC
ACACCAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGCATCGCTT
GCCCAAAAGGATTACAATTCAATGAGAAATGGAACGCCTGTTTGTACCAA
GGAAAATACAAGACAGAACCAGAATCCCCACCAAAACactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002627-exon-sc0000021-1491911889:495511..495570 | TCONS_00002627-exon-sc0000021-1491911889:495511..495570 | Clytia hemisphaerica | exon |
| TCONS_00002627-exon-sc0000021-1510915933:495511..495570 | TCONS_00002627-exon-sc0000021-1510915933:495511..495570 | Clytia hemisphaerica | exon |
| TCONS_00002627-exon-sc0000021-1575043694:495511..495570 | TCONS_00002627-exon-sc0000021-1575043694:495511..495570 | Clytia hemisphaerica | exon |
| TCONS_00002627-exon-sc0000021-1491911889:501013..501517 | TCONS_00002627-exon-sc0000021-1491911889:501013..501517 | Clytia hemisphaerica | exon |
| TCONS_00002627-exon-sc0000021-1510915933:501013..501517 | TCONS_00002627-exon-sc0000021-1510915933:501013..501517 | Clytia hemisphaerica | exon |
| TCONS_00002627-exon-sc0000021-1575043694:501013..501517 | TCONS_00002627-exon-sc0000021-1575043694:501013..501517 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:495511..501517 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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