TCONS_00002628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002628
Unique NameTCONS_00002628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002628 ID=TCONS_00002628|Name=TCONS_00002628|organism=Clytia hemisphaerica|type=transcript|length=565bp
AAGTAATCTCAGAAGAACAAACAAACATGAAGGTCATCATTTTCACCGCT
TTCTTGGCTGTTGCCGCCGCCCTTGAGGTTGGAACCCAAACTGGTACCAC
ACCACCAGCTGTCCCATGCCCAGACTCTCTCTGCAAAGGAAGAGCTGATG
GAAACTACGAATACTACTACTACAGCCGATACAACCCGCACTACTTCCTC
CAATGCTCCAACGGATTAGCTTACTGTCAAGCTTGCTGGCCATTGTCCTT
GGAATTCAGCGAACCATGCAACCAATGTTTGTACAACCGAAAAGACGAAT
GTGTCACCACACAACCCTGGGAACCAGCAACTACCTTCGAATGCCCAGAC
AAATGCCCAGCTCGTGGACCACACTTCAGCGGAAACATTGAAGACGATCA
CAACCCACACCAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGCA
TCGCTTGCCCAAAAGGATTACAATTCAATGAGAAATGGAACGCCTGTTTG
TACCAAGGAAAATACAAGACAGAACCAGAATCCCCACCAAAACactaaat
tatttcatttttttt
Run BLAST on NCBI

transcript from alignment at sc0000021:500805..501517+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002628 ID=TCONS_00002628|Name=TCONS_00002628|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0000021:500805..501517+ (Clytia hemisphaerica)
AAGTAATCTCAGAAGAACAAACAAACATGAAGGTCATCATTTTCACCGCT
TTCTTGGCTGGTAAGTACTTCAAACAACTTTAAGAAAATAATGTCGTTGT
ATAAAAGTATTGATTTTTAAGAGCAACCATTACTGAATTTATTAACTAAT
TTCGCAGATCACTgaattttgaaggtttaaatTCATTGCAATAATCTTCA
TCTTTCAGTTGCCGCCGCCCTTGAGGTTGGAACCCAAACTGGTACCACAC
CACCAGCTGTCCCATGCCCAGACTCTCTCTGCAAAGGAAGAGCTGATGGA
AACTACGAATACTACTACTACAGCCGATACAACCCGCACTACTTCCTCCA
ATGCTCCAACGGATTAGCTTACTGTCAAGCTTGCTGGCCATTGTCCTTGG
AATTCAGCGAACCATGCAACCAATGTTTGTACAACCGAAAAGACGAATGT
GTCACCACACAACCCTGGGAACCAGCAACTACCTTCGAATGCCCAGACAA
ATGCCCAGCTCGTGGACCACACTTCAGCGGAAACATTGAAGACGATCACA
ACCCACACCAATACGTCGCTTGCTTCCACGGACAAACTGTCGGATGCATC
GCTTGCCCAAAAGGATTACAATTCAATGAGAAATGGAACGCCTGTTTGTA
CCAAGGAAAATACAAGACAGAACCAGAATCCCCACCAAAACactaaatta
tttcatttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001420XLOC_001420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002628-exon-sc0000021-1491911889:500805..500864TCONS_00002628-exon-sc0000021-1491911889:500805..500864Clytia hemisphaericaexon
TCONS_00002628-exon-sc0000021-1510915933:500805..500864TCONS_00002628-exon-sc0000021-1510915933:500805..500864Clytia hemisphaericaexon
TCONS_00002628-exon-sc0000021-1575043694:500805..500864TCONS_00002628-exon-sc0000021-1575043694:500805..500864Clytia hemisphaericaexon
TCONS_00002628-exon-sc0000021-1491911889:501013..501517TCONS_00002628-exon-sc0000021-1491911889:501013..501517Clytia hemisphaericaexon
TCONS_00002628-exon-sc0000021-1510915933:501013..501517TCONS_00002628-exon-sc0000021-1510915933:501013..501517Clytia hemisphaericaexon
TCONS_00002628-exon-sc0000021-1575043694:501013..501517TCONS_00002628-exon-sc0000021-1575043694:501013..501517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:500805..501517 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0910165	0	0	0.0447878	0	0	0	0	0.0317038	0	0.0499922	9.03089	16.0277	349.546	122.419	4.09036	0.473661	0.149043	0	0.02685	0	0	0	0	0	0	0	0	0.083806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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