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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002630 ID=TCONS_00002630|Name=TCONS_00002630|organism=Clytia hemisphaerica|type=transcript|length=1515bp
ttttgaatgttCGCGAAACAAAATGGCGTGTGGTTGTAGATTATTGCTGA
TTTCAACAATCGTAATTCTTGCAGAATGGTGCAAAGCTTTCCCAGccTCG
AGATTCATTGGAACACCAAATAATCAAAACTATGTTCGATCACAATTCCC
TAGAATGCCTTCAGAAGACAAATATTACAACAATTGGAAAAAATGGGCAA
ATTCTGAAGAAATAACACAATGGCAGCGTTCAGCCGTACCATACGGAGGA
CAAATGGAAGACACCAAAAGATTCTCCNTGGCAGCGTTCAGCCGTACCAT
ACGGAGGACAAATGGAAGACACTAAAAGATTCTCCATGCAAATACCGTTA
AATGATTTAAGAACTTTATACGGCTCGTATGATTTAGTACAAGCTGCAGA
AAAAAAAGCAGCTATTGTTCAGCCAATATATCAAGGTCAATCTCCATTAC
AAGCATACATTCAACAGCCTTCATATCCAAGTGTGATGACATTCATACCG
AATATGGCATTCCAAAAAGCTGACCAAAGAGGTGATATCATTCAACCAGA
GATTCGACAACAGTTATCACTACCTCCACCTAATATCCCTTACGATCCAA
CCGTTTTGGGAATACCACAGAATCCAACTCAATCTTGCCAAGGATGCAAT
GGTGATTGCAGTAATTACCTTTGTTATGGATGTGGTGGTTGTCCAGCTGA
TGGAACACAGAAACCACATTATATGTATCCCTACCAAAAACAGGATTCAG
gcTATCATGATGCTTTTGAAAGTCATGCAATGGATTTATCTGGACTAATC
ATATCTCCAGTTCCTCCATTACCGAAACGTATGCAACCAAAAGGCAAACC
ACGACCAGGGAAATCGAACACTCCTGAAGATGATGACGATAATGATGATG
ATAACGATGACGATGAggacgaaaacgaaagtgaaagtgactcCGACGAT
AACGACAATGACGATGACGACACAGTCGATGATGAGTCGGCTGCCGATAA
TgtaactgaaaatcaaacaatgaaCAATTCCTCTTCttcaaaattgaaga
aaatgaagaaaacaaatAAATCGAAACAAAGACATAAAAAAAAGAACCGC
TAGTTTGTTATAGGAATTGAAATCTAGATTAATATTAGATCTTCTTCAAA
GTAGCACGGTGGTATGAGGTGGAACCCCAAGGCGATACTCTAATTACTTT
AATGTTGTCCACACAATGTTCAAGCTACAAATTGGTGAAAGCTCCAAGAA
TGGTAACACACAAAACTTTATACAATTTTTGACAACCGTTGTTTTTCTGA
CAACCGATGCTTCAAATTACCTTAGAGAAGATTCATACGAAACTATAGTA
ACTAACTAGGACACTTGAAGATTGATTGAGTGAGTatgttttgtagaaat
aatATCAGAAGTAAAAAcccttttaaaatattttaaaaagtattatttGA
AAAGGTATAACGAAATGTACAGTTATAATTTATggacaaagaaaatttaa
aaatctgtgAAAGTC Run BLAST on NCBI transcript from alignment at sc0000021:538483..542338+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002630 ID=TCONS_00002630|Name=TCONS_00002630|organism=Clytia hemisphaerica|type=transcript|length=3856bp|location=Sequence derived from alignment at sc0000021:538483..542338+ (Clytia hemisphaerica)
ttttgaatgttCGCGAAACAAAATGGCGTGTGGTTGTAGATTATTGCTGA
TTTCAACAATCGTAATTCTTGCAGAATGGTGCAAAGCTTTCCCAGgttat
ttgaaagattttttctgaGCCTATTAAAAAGAGTGCTTCATCTTGTTAGC
TAGACCGAAGGATAGAGAGAGCTCAAAGCTATAGGATCTCTTTTTATAAT
CCTGTCTCAGTGAACAGAATTTGCAATCTTATCGGCAATCTTATTTTAAT
TGTATTTCCAGATAGAACTCTACAGATCTATGATGCAGATATGTCTTACG
AAATGTTGACTGGATCAGTAATCAGTTTAAGTTTTTATCGATTAAGGGCT
TGCCAAAaccaatattttattttatattttataaccAGTAATTTTTTTCG
ACCtctaatcttttcaaaaatatttcagccTCGAGATTCATTGGAACACC
AAATAATCAAAACTATGTTCGATCACAATTCCCTAGAATGCCTTCAGAAG
ACAAATATTACAACAATTGGAAAAAATGGGCAAATTCTGAAGAAATAACA
CAATGGCAGCGTTCAGCCGTACCATACGGAGGACAAATGGAAGACACCAA
AAGATTCTCCNTGGCAGCGTTCAGCCGTACCATACGGAGGACAAATGGAA
GACACTAAAAGATTCTCCATGCAAATACCGTTAAATGATTTAAGAACTTT
ATACGGCTCGTATGATTTAGTACAAGCTGCAGAAAAAAAAGCAGCTATTG
TTCAGCCAATATATCAAGGTCAATCTCCATTACAAGCATACATTCAACAG
CCTTCATATCCAAGTGTGATGACATTCATACCGAATATGGCATTCCAAAA
AGCTGACCAAAGAGGTGATATCATTCAACCAGAGATTCGACAACAGTTAT
CACTACCTCCACCTAATATCCCTTACGATCCAACCGTTTTGGGAATACCA
CAGAATCCAACTCAATCTTGCCAAGGATGCAATGGTGATTGCAGTAATTA
CCTTTGTTATGGATGTGGTGGTTGTCCAGCTGATGGAACACAGAAACCAC
ATTATATGTATCCCTACCAAAAACAGGATTCAGGTAATTCTGAGGTCATG
TTCGCACGTAATGGTTCCGTTTGATCCGTAACTAAAtgagccattctatt
ggttagaagtggcgtaaaacttgaatgtaaccaatagaatggcttcattt
cgtttcggatgAAAGGGAACCGTAGCGTGTGAGCGTGgtctaaatttcaa
ttttcaatctcTTACCCAGAGCCATTTTTGCCAAAATAGGATTTTACTGG
TGAAGGTGTTACAGCCTTTCGTGGGTGCCGTCAAGATTTTTGGCTTTTGC
TTAGTCAGTCTATGTTCTTTTTGTCTGTTATAGTAAAAATCCGCTTTTAT
CACTAACTTATTTACTAGTTCTcagttattttttttatttttttccaggc
TATCATGATGCTTTTGAAAGTCATGCAATGGATTTATCTGGACTAATCAT
ATCTCCAGTTCCTCCATTACCGAAACGTATGCAACCAAAAGGTATTTATT
ATGATAGAAATTAAGGTTTTAGGATAGGATAGGTTTTTCGAATTGCGCAT
ATCGGTAAATTATTTGCCACATTCATTGCATTTAATCCAAAAACACTAAT
CTTTTTTGCAGTGACTCATTCATCCTCTCGGTAAAGCATTTACCACGCCC
AttacattaactctaaaaccaCCTCTACCTTTTTTGCATTGGCTCGTTCA
TTCGTCTTCTCAAAATATTTACCACACACATTACACATTACATTCGAATT
AGGATTGACCCTCTAGTATTTTTTTAGTTCATTATCCTCTAGCTAAAGCA
TTTACCACATCCATAACATTCGATTTAAGATTACCCTCTAGATCTTTTCG
TGTTGTTTCATCATCCTGATCATCAAAGTATTTGCCACACCTTTacattt
aatttaaaaaataacctGTAGTTTATGCATTGACTCGTTCGTCCTCTCAT
CAAAGCATTTACCAAACACTTTGCATTCGATTTGAGATAACCCTCTAGAT
ATTTTTTGTATTGGTTCATCATCCTTTAAGCAAAGCATTTACCACGTACA
atacattttctttgagattaCACTCTAGTTTTTTTGTATTGTGTTCATCA
AGGTATCTACCACAGCCATTATATTCGATCTAAGATAACTAACATAGGcg
aagcgagataccctgcaaaatttatgagggagtgcagacgtttatgacat
attcattatcttttgataaaacaaagacaataattacagtgtcgtaaaaa
ccacTCTCATCCATagattttgcagggtatctcgctaagCCTATGGGTAG
CCTCCTACCTATTTCGCAATGACTCGTTCATCCTCTCATCAAAGCATTTA
CCACACACATTAGATTCGATTTGAGATTACCCTTTAGCTGTTTCTATGTT
CGTTTATTCTCCTTCACAAAACATTTACCACACACATGCGTTTTTACATT
CGATTTGAGATTACCCTCTCGCTTTCGGTTTGTCGCTCTGGTCTTTTCTT
ctatttcaacaatttttctaTTCGAGCTTTCAGGATCGGTTCTATTTGAA
ACCTACCTTAATGGATACTGTAGATTCGTTAGGGTGAAGCACTTACCATG
AACATTacatttaaattgaaaaattttgcatCATCTTGTAAATAATTGTA
AAACTGAAGCATCTGTTATTTAAGATGAATTTTGCATCACTTGTAAAATA
TTTCAACACGTCGTGTAAAGATTTTCACCTCTAAGAATCAGTTAGATTGA
AAGTTTGACATCTAACACATACGATAAATTcactatacacgtttttttta
taagaacatccaaaattttggaagccTTCGTCAGAtttaacattttgagt
tttaagcttaaaaatgttctcagcATGTccttattttgatcattttgtga
atatttttgtccattttcctaagaagaagggtgtttttgagaccacaaag
ccttaaaatgttcttaacttgtttttaacattttggccatcgaagcatta
tgttcttatataaaaagtatatgcaaaaaaaaagaaacctttAAAAATCC
TTTCTCCATTGTAAAGAGGAACTTATCTTAAATCAGTTAAGTTAAAACCC
TTCTAATTCCACCGTATTTTTTTCCCTTTCACAGGCAAACCACGACCAGG
GAAATCGAACACTCCTGAAGATGATGACGATAATGATGATGATAACGATG
ACGATGAggacgaaaacgaaagtgaaagtgactcCGACGATAACGACAAT
GACGATGACGACACAGTCGATGATGAGTCGGCTGCCGATAATgtaactga
aaatcaaacaatgaaCAATTCCTCTTCttcaaaattgaagaaaatgaaga
aaacaaatAAATCGAAACAAAGACATAAAAAAAAGAACCGCTAGTTTGTT
ATAGGAATTGAAATCTAGATTAATATTAGATCTTCTTCAAAGTAGCACGG
TGGTATGAGGTGGAACCCCAAGGCGATACTCTAATTACTTTAATGTTGTC
CACACAATGTTCAAGCTACAAATTGGTGAAAGCTCCAAGAATGGTAACAC
ACAAAACTTTATACAATTTTTGACAACCGTTGTTTTTCTGACAACCGATG
CTTCAAATTACCTTAGAGAAGATTCATACGAAACTATAGTAACTAACTAG
GACACTTGAAGATTGATTGAGTGAGTatgttttgtagaaataatATCAGA
AGTAAAAAcccttttaaaatattttaaaaagtattatttGAAAAGGTATA
ACGAAATGTACAGTTATAATTTATggacaaagaaaatttaaaaatctgtg
AAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002630-exon-sc0000021-1491911889:538483..538577 | TCONS_00002630-exon-sc0000021-1491911889:538483..538577 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1510915933:538483..538577 | TCONS_00002630-exon-sc0000021-1510915933:538483..538577 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1575043694:538483..538577 | TCONS_00002630-exon-sc0000021-1575043694:538483..538577 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1491911889:538911..539565 | TCONS_00002630-exon-sc0000021-1491911889:538911..539565 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1510915933:538911..539565 | TCONS_00002630-exon-sc0000021-1510915933:538911..539565 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1575043694:538911..539565 | TCONS_00002630-exon-sc0000021-1575043694:538911..539565 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1491911889:539931..540023 | TCONS_00002630-exon-sc0000021-1491911889:539931..540023 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1510915933:539931..540023 | TCONS_00002630-exon-sc0000021-1510915933:539931..540023 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1575043694:539931..540023 | TCONS_00002630-exon-sc0000021-1575043694:539931..540023 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1491911889:541667..542338 | TCONS_00002630-exon-sc0000021-1491911889:541667..542338 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1510915933:541667..542338 | TCONS_00002630-exon-sc0000021-1510915933:541667..542338 | Clytia hemisphaerica | exon |
| TCONS_00002630-exon-sc0000021-1575043694:541667..542338 | TCONS_00002630-exon-sc0000021-1575043694:541667..542338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:538483..542338 + |
Blast
The following BLAST results are available for this feature:
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