|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=transcript|length=1240bp TGATACAGTTATAATTTATGTGATAAAAATATAAGATGGATAAATATTGG AAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACC AGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATC ATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACGATAAAAACATA CCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACGACGGATATCAT TTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAACAACCAAGaTTT GCCGTAAAGCGTTACTCAAGTTATCGAATATTGTAAAATCATATTGGAAA GGAACGTTGAAACTTCTTGTCATTCAAGGTTATATGTCATCACCAGAAAA AGAAGTGGAAAACGATAAACTACATATGCTAGGACGAGCATTTAATCTTG AATTAAAACTAAGTAAAAATCCAAGCAAGCATCACAAAGTAGCTGATCAT GTCATTTCAAGACTAGGGGAACTTGCATATAGAAATACACAATTTCAATA TGTTAGATTTGACGAAGGTGGATATCTTCATGTTTCCTGCCCATGCGAAg TCGATAAAGTTGAAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTT CAAAATGGCAGCCGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGT ACTCACAATGAACCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGC TGAtgcatcaaaacaaaggaactCTCATTCAGAATTATGTACAAATTACA ACAGATAATGACAAAAGTATCACAATCAGTAGACACCACTTGATTTTTGT TTCCAAAACTCAAACTAAATACGCTAAAGACGTTCTCACCGGTGATTTAT TATTCACCTATGATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACA CACATTGAGCATGATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAA AAGTGGAACTTTAATCGTCAATGATGTTTATGCATCTTGCTACGCTATGT TTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtt tatgattttttgaaatactttgattTCTCAATTGGAATACCTTCAGATGA AATACATTGGTACCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacg ttttataaaaaatcttttggaaGATGTTTGGAAAGTGGCG Run BLAST on NCBI protein sequence of TCONS_00002631-protein >TCONS_00002631-protein ID=TCONS_00002631-protein|Name=TCONS_00002631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MDKYWKTCLLLCLLSPVNLCGPGRSPSHSRFKRLRKGDHFPEYLHSEVDV YDKNIPPKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIV KSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHH KVADHVISRLGELAYRNTQFQYVRFDEGGYLHVSCPCEVDKVESRCFPSN SEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQN YVQITTDNDKSITISRHHLIFVSKTQTKYAKDVLTGDLLFTYDSLTKKAA KSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFW LWRQVYDFLKYFDFSIGIPSDEIHWYPDVFRKTLVYFNVL Run BLAST on NCBI transcript from alignment at sc0000021:549843..556023+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=transcript|length=6181bp|location=Sequence derived from alignment at sc0000021:549843..556023+ (Clytia hemisphaerica) TGATACAGTTATAATTTATGTGATAAAAATATAAGATGGATAAATATTGG
AAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACC
AGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATC
ATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACGATAAAAACATA
CCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACGACGGATATCAT
TTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAACAACCAAGGTAT
TGTTTACTTTTATTGCTAACAATTAACGGAAAGTTTTTTTATGCTGATCT
CATTTTTTTCGGAATTTGGTTGGTTAAGCTTTTGTCTTAAAAGATTATCT
GATAAAGTAGTCTTTTTATTCGGACTATGgttcattgatttcaaagcccc
gaagAGGCTAGATCTGAAACTTCTGACACGTGACTCGCTTGGCTTTCatg
caaaatttctaaatgcggGGCGAATCTTAAGGCTTTATTTTTTCTTGCTT
GCGAAAGATTGAAGATTCCTCTCAAACTCGATACTATTATTCTAGTTATT
CATACAAGCTAGACAATGGAAAAGAggtaaatattcaaaaaatttatttc
aaaagttttatgtctttcaaaaaaagttttagcttttattttttttttag
tcggaccctaaattttcgaaaaactaacGAAAccttatcaaaataaaaca
aagcaCTTGAAAATTCATTAATAAAGACCTAAGGAAACCGGGAACCCAAC
GGTCTACCAACAGGAAATgattaaaatataaattttcctggTGTTGGTGT
GTTTACCACGGTTTTTGATTAggtataaattgaaaaatttaaccAAAAAA
GGCAACGTTTTTTTTGACGAACACCTTTTGAGCGACGTggtgatttcttt
ttttgacagtttttaaCGTGATCAAAGCGAAGAGCTTGCTCGACCAGAAT
TAAGTTTCGATCCTCTTAAGATTTTAAGcacgacccccccccccgggcaa
taTCAAGATGAAATAGGAAACTACAGGTGCGAGTGTCAAGCTAAATCTGT
TTCACTCTAAAATTAATTGAAAGGATTAAGttgattctttttcttcttca
ttttcaatcttcattttcgcacaaaaccgctatctaattcgaattctata
aAAAAATACGACTtcttttgtctccgctgcaaattatattgaaacAGATT
TTATGAAACGTTTCTCACATTACATTAAACTTCAAATAGTTCTTTATAGC
CCCATTAAAAGCCATAAAATGAACAATTAGGCATATCATTGTGCATTTTA
GAACCGGAAAAGCTAATGGTGCATAAAGAGTCTGCCGTTAAAAAGTcgta
aaacaaacaaatttacaatattaaattgttttttgatCGAAAACTTCAAA
CTGGCATAAAAGCTTGAGAGTTAGACCAGACAATGGTTAGACTAGAAAAT
GGTTTTAGCACAATCACAAAGGTATTTTTCATACTcctttaaaatacttt
ctgcTTATGCCCttaaaaccattgagtttaaagccccaacggctagagtt
caatctctaacctttctcaggcaagaaaaagcaaagccttaaaaaatgcg
ccgcatttttgacgacagattgaatctagcaattcctttgtttacgattg
ataattttttcgaaatttagcggtaaattttagtttcaatctgttatttg
tgtaaaaaccaggcgagccgctcaaggccgcgcaacttggtaggatttgt
tggcttcaaattttaccgaggagattgacttctagcccttcgggcttata
cttcattgcttAAAAccaagtggtcaggagctacGACTAAAAGTCTCGGA
CTTAGCATTTTGACCTATGGTTTTAGAAGCATATACGCGTCTTTTGGCTT
TAAgcttacaaaaataaacaagaagccggagcggcgtgaaggtccagctg
acatggcaataaccgaatgtcgttcgtactgggttccttaagtgacgcaa
aaaaatttccttcccatcctccactctgagcttctattctttaaAACTTG
CTTTGTATTGCaaagttctgaaagtttttgatgcatttcacgaaatttcg
aaacttttgacgcttaggggattcgaacccactatatacaaatCACCTAT
GAATGGAtcgccagcgccttaaccactcggccatcgggtcacaactgcat
taaggagttcaaagttccttataaacatggtatttactccaaactctacc
cgggggctaaaacccttaccaggggttaactcccatccccaaccctacct
gaccctacctgaaacaaccctttaatctaaccgggaaatttgactctact
accaattcaatacaaaacataggtcaaacaacgcgcgggtaggcggggca
aaaattctagatcggtggttggtttagcctggacttgttaatttattgcg
cgcacaggccccgacaaagactaaatcttttcgatcagttgctttttaaa
ggtccattctgctgcgcgctggaccaacaaaaaatagcaaaaattaaAGT
TTTGGATTTGGCATTGAATAAGGTAGagctaattttaattttttgatttt
tttactttttttttggatttagaTTTGCCGTAAAGCGTTACTCAAGTTAT
CGAATATTGTAAAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATT
CAAGGTTATATGTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACA
TATGCTAGGACGAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAA
GCAAGCATCACAAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTT
GCATATAGAAATACACAATTTCAATATGTTAGATTTGACGAAGGTGGATA
TCTTCATGTTTCCTGCCCATGCGAAggtgatttcatttttattgaatCTC
TTTCTTTATGATAGGAAATGTCTACATTCATTTTTAGGATAATACATTAT
TGtcctttcccagctggcactcaaagttgttttaacgttcaaataacgtt
atttggacgttatgaatgtcaaatggacgctgttttgacgttgtgtgccg
tctgggttAGCATTCTTCTTGCATGAACCGGAAGAAGCTTCCTTTATCCT
TCTTGGACAAGAAGCCAATGCCCAAAAGCAAAGGTTCGGTTACCGTCGTT
TTAGATAAGatggccgggtagctcagtcggtagagcattcgccttacaat
ctaaggtttgtgggttcgatccccggtcaccgctaactcagcggatgagt
agcttagattgggtaatctgatctaggcggtaagttactgggagctgaga
gtaggtgtggcgctccacctcagcattcgatctcccagatCTAGCGcgaa
tagaaaaggggatagacccCTTCACTCCccgctccgccgacagccactag
atgaatatacttacttataCTTACTTAGATAAGATTCTACCTCCAGGGAT
TTGATTCCACTGACCTTTCCGCTATCTTTTCCGGGATTGCCAGCTcaaga
ttgaaaaaatattttttctcaatgaGGTACCGAAAAACGATTGTGCTGAT
TTAGGAAACTGGTTAACTTTCCAAACcctcatttttcaactacccagAAC
TCTGGTCTTTTTCCTGCTAGAAAGTGACGGTAGAATCTTGGTATATGAAG
TGGAATCTCACCCAAATCAACATCCGAAAGTGAATACTGGATACTCATCT
CAATtaaatcatgacgtcatatCATGGGAAAATTCATCTCAAGAATATAG
ATCattttcgatttgaaaacttgcaTTTGCGTCAAGGAAAAGACAATCTA
AAATTAAAAGCATGTCAAATATGTGTCTACTTCAAGTGTGGATTTTAAAC
TGTGCACACATAATTACCCAATTAAATTTTACAAACGCGTTTCATCGAAA
TTGATTTAATTGTTGGGGTTTGGCAAAAAAAGTGCCTTAAAAGCAGACTT
ATATTTCATCACCAAGCTTTAATAATGCTTTAAATGGAGGATAAAGACAG
CTTCCTGGCAACATTTTAGTGTCATTTATTTCTTTACAGTTTATTCTTAT
ATCGTTAGCTTTTTATCCCTATTTGTCCTTATCCCGGGATGGGACTTGTA
GATTTCCGTATGGATGGGGCCCAGTAGTGTGGTGACCGGGGGTTCAATGC
GCCTTCGAGCGGCCAAGCTTTTTGGATGCTCTGAAAGTCTTTGGGGTGTT
GAGAGTCAATGGATCCTAGAGGCGCCTCTGATTGCTTCTCTGCACCAAAA
GATTAGCATCGGCATAAAAGAGGGAGGATATTCAACAAATTTCGTACCGA
CTTCGCGTAATTATTCCAAAGAAAATGGGCTCCCAAGTTTGCCTCAGTTC
TGGTCGACCCACCAAACTACAGGTGGAGACGCCCTTACTTACTTCCATAT
CAAGtattaaaatattcaatatttctttttttcgatttctNGATTCTACC
TCCAGGGATTTGATTCCACTGACCTTTCCGCTATCTTTTCCGGGATTGCC
AGCTcaagattgaaaaaatattttttctcaatgtGGTACCGAAAAAAGAT
TGTGCTGATTTAGGAAACTGGTTAACTTTCCAAACCCTCATTTTTCAACT
ATCCAGAACTCTGTTCTTTTTCCTGCTAGAAAGTGACGGTAGAATCTTGG
TATATGAAGTGGAATCTCACCCAAATCAACATCCGAAAGTGAATACTGGA
TACTCATCTCAATtaaatcatgacgtcatatCATGGGAAAATTCATCTCA
AGAATATAGATCattttcgatttgaaaacttgcaTTTGCGTCAAGGAAAA
GACAATCTAAAATTAAAAGCATGTCAAATATGTGTCTACTTTAAGTGTAG
ATTTTAAACTGTGCACACATAATTACCCAATTAAATTTTACAAACGCGTT
TCATCGAAATTGATTTAATTGTTGGGGTTTGGCAAAAAAAGTGCCTTAAA
AGCAGACTTATATTTCATCACCAAGCTTTAATAATGCTTTAAATGGAGGA
TAAAGACAGCTTCCTGGCAACATTTTAGTGTCATTTATTTCTTTACAGTT
TATTCTTATATCGTTAGCTTTTTATCCCTATTTGTCCTTATCCCGGGATG
GGACTTGTAGATTTCCGTATGGATGGGGCCCAGTAGTGTGGTAACCGGGG
GTTCAATTACGCCTTCGAGCTGCCAAGCTTTTTGGGTGCTCTGAAAGTCT
TTGGGGTGTTGAGAGTCAATGGATCCTAGAGGCGCCTTTGATTGCTTCTC
TGCACCAAAAGATTAGCATCGGCATAAAAGAGGGAGAATATTCAACAAAT
TTTGTaccgagtttgaaaaatgggcTCCCAAGCTTGCCTCAGTTCTCGTC
GACCCACCAAACTACAGGTGGAGACATCCTTATTTACTTCCATATCAAGt
attaaaatattcaatatttctttttttcgatttcCTTTCAGTCGATAAAG
TTGAAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGC
AGCCGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAAT
GAACCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGAtgcatc
aaaacaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAAT
GACAAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAAC
TCAAACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCT
ATGATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAG
CATGATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAAC
TTTAATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGC
ATCGTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtttatgatttt
ttgaaatactttgattTCTCAATTGGAATACCTTCAGATGAAATACATTG
GTACCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaa
aaatcttttggaaGATGTTTGGAAAGTGGCG Coding sequence (CDS) from alignment at sc0000021:549843..556023+ >TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=CDS|length=3519bp|location=Sequence derived from alignment at sc0000021:549843..556023+ (Clytia hemisphaerica) ATGGATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGT CAATCTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCT TGAGAAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTA TACGATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTAT AACGACGGATATCATTTTTAAAGATTATCGATTTGAAAGTGATGCTAGAA AAACAACCAAGaTTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTA AAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATAT GTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGAC GAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGCATCAC AAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAA TACACAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTT CCTGCCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAAC TCTGAAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCG ACCTGGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCG ATGAAGTTGTCATGCTGAtgcatcaaaacaaaggaactCTCATTCAGAAT TATGTACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACA CCACTTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTC TCACCGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCC AAATCAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCA TGCTCCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCAT CTTGCTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGG TTGTGGAGACaagtttatgattttttgaaatactttgattTCTCAATTGG AATACCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTT TGGTTTACTTCAacgttttataaATGGATAAATATTGGAAAACGTGTCTA CTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACCAGGACGATCTCC TTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATCATTTTCCTGAAT ATCTTCATAGTGAGGTAGATGTATACGATAAAAACATACCCCCAAAACAT TGTTCAGAATTGGTCCAAATTATAACGACGGATATCATTTTTAAAGATTA TCGATTTGAAAGTGATGCTAGAAAAACAACCAAGaTTTGCCGTAAAGCGT TACTCAAGTTATCGAATATTGTAAAATCATATTGGAAAGGAACGTTGAAA CTTCTTGTCATTCAAGGTTATATGTCATCACCAGAAAAAGAAGTGGAAAA CGATAAACTACATATGCTAGGACGAGCATTTAATCTTGAATTAAAACTAA GTAAAAATCCAAGCAAGCATCACAAAGTAGCTGATCATGTCATTTCAAGA CTAGGGGAACTTGCATATAGAAATACACAATTTCAATATGTTAGATTTGA CGAAGGTGGATATCTTCATGTTTCCTGCCCATGCGAAgTCGATAAAGTTG AAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGCAGC CGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAATGAA CCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGAtgcatcaaa acaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAATGAC AAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAACTCA AACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCTATG ATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAGCAT GATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAACTTT AATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGCATC GTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtttatgattttttg aaatactttgattTCTCAATTGGAATACCTTCAGATGAAATACATTGGTA CCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaATGG ATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAAT CTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAG AAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACG ATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACG ACGGATATCATTTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAAC AACCAAGaTTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTAAAAT CATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATATGTCA TCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGACGAGC ATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGCATCACAAAG TAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAATACA CAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTTCCTG CCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAACTCTG AAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCGACCT GGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCGATGA AGTTGTCATGCTGAtgcatcaaaacaaaggaactCTCATTCAGAATTATG TACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACACCAC TTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTCTCAC CGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCCAAAT CAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCATGCT CCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCATCTTG CTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGGTTGT GGAGACaagtttatgattttttgaaatactttgattTCTCAATTGGAATA CCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTTTGGT TTACTTCAacgttttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002631-exon-sc0000021-1491911889:549843..550138 | TCONS_00002631-exon-sc0000021-1491911889:549843..550138 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1510915933:549843..550138 | TCONS_00002631-exon-sc0000021-1510915933:549843..550138 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1575043694:549843..550138 | TCONS_00002631-exon-sc0000021-1575043694:549843..550138 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1491911889:552515..552818 | TCONS_00002631-exon-sc0000021-1491911889:552515..552818 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1510915933:552515..552818 | TCONS_00002631-exon-sc0000021-1510915933:552515..552818 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1575043694:552515..552818 | TCONS_00002631-exon-sc0000021-1575043694:552515..552818 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1491911889:555384..556023 | TCONS_00002631-exon-sc0000021-1491911889:555384..556023 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1510915933:555384..556023 | TCONS_00002631-exon-sc0000021-1510915933:555384..556023 | Clytia hemisphaerica | exon |
TCONS_00002631-exon-sc0000021-1575043694:555384..556023 | TCONS_00002631-exon-sc0000021-1575043694:555384..556023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000021 | supercontig | sc0000021:549843..556023 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007275 | multicellular organism development |
GO:0007267 | cell-cell signaling |
GO:0006508 | proteolysis |
GO:0016539 | intein-mediated protein splicing |
Vocabulary: Molecular Function
Term | Definition |
GO:0008233 | peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007267 |
cell-cell signaling |
biological_process |
GO:0016539 |
intein-mediated protein splicing |
biological_process |
GO:0007275 |
multicellular organism development |
biological_process |
GO:0006508 |
proteolysis |
molecular_function |
GO:0008233 |
peptidase activity |
Blast
BLAST of TCONS_00002631 vs. Swiss-Prot (Human)
Match: IHH (Indian hedgehog protein OS=Homo sapiens GN=IHH PE=1 SV=4) HSP 1 Score: 129.798 bits (325), Expect = 2.664e-33 Identity = 106/383 (27.68%), Postives = 168/383 (43.86%), Query Frame = 3
Query: 93 CGPGRSPSHSRFKRLRK---------GDHFPEYLHSEVDVYDKNIP--PKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIVKSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHHKVADHVISRLGELAYRNTQ--FQYVRFDEGGYLHVSCPCEVDKVE--SRCFPSNSEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQNYVQITTDNDKSITISRHHLIFVSKTQTK--------YAKDVLTGD--LLFTYDSLTKKAAKSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFWLWRQVYDFLKYFDFSIGIPSDEIHWYP 1166
CGPGR SR + RK + PE Y+ I + EL DIIFKD R T+ C+ L L+ V + W G +KL V +G+ E+ LH GRA ++ +D ++ G LA + F +V ++ ++H S E CFP+ ++V L++G+R + +RPGD VL M ++G F +V++ + + L V T D + + ++ HL+F + T+ +A V G L+ L ++ TH+ G +APLTK GTL+V DV ASC+A H ++ FW R ++ L + ++ P + +HWYP
Sbjct: 28 CGPGRVVG-SRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPG-VKLRVTEGWDEDGHHSEES--LHYEGRAVDI------------TTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTADNHTEPAARFRATFASHVQPGQYVLVAGVPGLQPARVAAVSTHV-----ALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLR-LFHSLAWGSWT---PGEGVHWYP 385
The following BLAST results are available for this feature:
|