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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=transcript|length=1240bp
TGATACAGTTATAATTTATGTGATAAAAATATAAGATGGATAAATATTGG
AAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACC
AGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATC
ATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACGATAAAAACATA
CCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACGACGGATATCAT
TTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAACAACCAAGaTTT
GCCGTAAAGCGTTACTCAAGTTATCGAATATTGTAAAATCATATTGGAAA
GGAACGTTGAAACTTCTTGTCATTCAAGGTTATATGTCATCACCAGAAAA
AGAAGTGGAAAACGATAAACTACATATGCTAGGACGAGCATTTAATCTTG
AATTAAAACTAAGTAAAAATCCAAGCAAGCATCACAAAGTAGCTGATCAT
GTCATTTCAAGACTAGGGGAACTTGCATATAGAAATACACAATTTCAATA
TGTTAGATTTGACGAAGGTGGATATCTTCATGTTTCCTGCCCATGCGAAg
TCGATAAAGTTGAAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTT
CAAAATGGCAGCCGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGT
ACTCACAATGAACCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGC
TGAtgcatcaaaacaaaggaactCTCATTCAGAATTATGTACAAATTACA
ACAGATAATGACAAAAGTATCACAATCAGTAGACACCACTTGATTTTTGT
TTCCAAAACTCAAACTAAATACGCTAAAGACGTTCTCACCGGTGATTTAT
TATTCACCTATGATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACA
CACATTGAGCATGATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAA
AAGTGGAACTTTAATCGTCAATGATGTTTATGCATCTTGCTACGCTATGT
TTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtt
tatgattttttgaaatactttgattTCTCAATTGGAATACCTTCAGATGA
AATACATTGGTACCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacg
ttttataaaaaatcttttggaaGATGTTTGGAAAGTGGCG Run BLAST on NCBI protein sequence of TCONS_00002631-protein >TCONS_00002631-protein ID=TCONS_00002631-protein|Name=TCONS_00002631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MDKYWKTCLLLCLLSPVNLCGPGRSPSHSRFKRLRKGDHFPEYLHSEVDV
YDKNIPPKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIV
KSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHH
KVADHVISRLGELAYRNTQFQYVRFDEGGYLHVSCPCEVDKVESRCFPSN
SEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQN
YVQITTDNDKSITISRHHLIFVSKTQTKYAKDVLTGDLLFTYDSLTKKAA
KSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFW
LWRQVYDFLKYFDFSIGIPSDEIHWYPDVFRKTLVYFNVL Run BLAST on NCBI transcript from alignment at sc0000021:549843..556023+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=transcript|length=6181bp|location=Sequence derived from alignment at sc0000021:549843..556023+ (Clytia hemisphaerica)
TGATACAGTTATAATTTATGTGATAAAAATATAAGATGGATAAATATTGG
AAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACC
AGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATC
ATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACGATAAAAACATA
CCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACGACGGATATCAT
TTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAACAACCAAGGTAT
TGTTTACTTTTATTGCTAACAATTAACGGAAAGTTTTTTTATGCTGATCT
CATTTTTTTCGGAATTTGGTTGGTTAAGCTTTTGTCTTAAAAGATTATCT
GATAAAGTAGTCTTTTTATTCGGACTATGgttcattgatttcaaagcccc
gaagAGGCTAGATCTGAAACTTCTGACACGTGACTCGCTTGGCTTTCatg
caaaatttctaaatgcggGGCGAATCTTAAGGCTTTATTTTTTCTTGCTT
GCGAAAGATTGAAGATTCCTCTCAAACTCGATACTATTATTCTAGTTATT
CATACAAGCTAGACAATGGAAAAGAggtaaatattcaaaaaatttatttc
aaaagttttatgtctttcaaaaaaagttttagcttttattttttttttag
tcggaccctaaattttcgaaaaactaacGAAAccttatcaaaataaaaca
aagcaCTTGAAAATTCATTAATAAAGACCTAAGGAAACCGGGAACCCAAC
GGTCTACCAACAGGAAATgattaaaatataaattttcctggTGTTGGTGT
GTTTACCACGGTTTTTGATTAggtataaattgaaaaatttaaccAAAAAA
GGCAACGTTTTTTTTGACGAACACCTTTTGAGCGACGTggtgatttcttt
ttttgacagtttttaaCGTGATCAAAGCGAAGAGCTTGCTCGACCAGAAT
TAAGTTTCGATCCTCTTAAGATTTTAAGcacgacccccccccccgggcaa
taTCAAGATGAAATAGGAAACTACAGGTGCGAGTGTCAAGCTAAATCTGT
TTCACTCTAAAATTAATTGAAAGGATTAAGttgattctttttcttcttca
ttttcaatcttcattttcgcacaaaaccgctatctaattcgaattctata
aAAAAATACGACTtcttttgtctccgctgcaaattatattgaaacAGATT
TTATGAAACGTTTCTCACATTACATTAAACTTCAAATAGTTCTTTATAGC
CCCATTAAAAGCCATAAAATGAACAATTAGGCATATCATTGTGCATTTTA
GAACCGGAAAAGCTAATGGTGCATAAAGAGTCTGCCGTTAAAAAGTcgta
aaacaaacaaatttacaatattaaattgttttttgatCGAAAACTTCAAA
CTGGCATAAAAGCTTGAGAGTTAGACCAGACAATGGTTAGACTAGAAAAT
GGTTTTAGCACAATCACAAAGGTATTTTTCATACTcctttaaaatacttt
ctgcTTATGCCCttaaaaccattgagtttaaagccccaacggctagagtt
caatctctaacctttctcaggcaagaaaaagcaaagccttaaaaaatgcg
ccgcatttttgacgacagattgaatctagcaattcctttgtttacgattg
ataattttttcgaaatttagcggtaaattttagtttcaatctgttatttg
tgtaaaaaccaggcgagccgctcaaggccgcgcaacttggtaggatttgt
tggcttcaaattttaccgaggagattgacttctagcccttcgggcttata
cttcattgcttAAAAccaagtggtcaggagctacGACTAAAAGTCTCGGA
CTTAGCATTTTGACCTATGGTTTTAGAAGCATATACGCGTCTTTTGGCTT
TAAgcttacaaaaataaacaagaagccggagcggcgtgaaggtccagctg
acatggcaataaccgaatgtcgttcgtactgggttccttaagtgacgcaa
aaaaatttccttcccatcctccactctgagcttctattctttaaAACTTG
CTTTGTATTGCaaagttctgaaagtttttgatgcatttcacgaaatttcg
aaacttttgacgcttaggggattcgaacccactatatacaaatCACCTAT
GAATGGAtcgccagcgccttaaccactcggccatcgggtcacaactgcat
taaggagttcaaagttccttataaacatggtatttactccaaactctacc
cgggggctaaaacccttaccaggggttaactcccatccccaaccctacct
gaccctacctgaaacaaccctttaatctaaccgggaaatttgactctact
accaattcaatacaaaacataggtcaaacaacgcgcgggtaggcggggca
aaaattctagatcggtggttggtttagcctggacttgttaatttattgcg
cgcacaggccccgacaaagactaaatcttttcgatcagttgctttttaaa
ggtccattctgctgcgcgctggaccaacaaaaaatagcaaaaattaaAGT
TTTGGATTTGGCATTGAATAAGGTAGagctaattttaattttttgatttt
tttactttttttttggatttagaTTTGCCGTAAAGCGTTACTCAAGTTAT
CGAATATTGTAAAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATT
CAAGGTTATATGTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACA
TATGCTAGGACGAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAA
GCAAGCATCACAAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTT
GCATATAGAAATACACAATTTCAATATGTTAGATTTGACGAAGGTGGATA
TCTTCATGTTTCCTGCCCATGCGAAggtgatttcatttttattgaatCTC
TTTCTTTATGATAGGAAATGTCTACATTCATTTTTAGGATAATACATTAT
TGtcctttcccagctggcactcaaagttgttttaacgttcaaataacgtt
atttggacgttatgaatgtcaaatggacgctgttttgacgttgtgtgccg
tctgggttAGCATTCTTCTTGCATGAACCGGAAGAAGCTTCCTTTATCCT
TCTTGGACAAGAAGCCAATGCCCAAAAGCAAAGGTTCGGTTACCGTCGTT
TTAGATAAGatggccgggtagctcagtcggtagagcattcgccttacaat
ctaaggtttgtgggttcgatccccggtcaccgctaactcagcggatgagt
agcttagattgggtaatctgatctaggcggtaagttactgggagctgaga
gtaggtgtggcgctccacctcagcattcgatctcccagatCTAGCGcgaa
tagaaaaggggatagacccCTTCACTCCccgctccgccgacagccactag
atgaatatacttacttataCTTACTTAGATAAGATTCTACCTCCAGGGAT
TTGATTCCACTGACCTTTCCGCTATCTTTTCCGGGATTGCCAGCTcaaga
ttgaaaaaatattttttctcaatgaGGTACCGAAAAACGATTGTGCTGAT
TTAGGAAACTGGTTAACTTTCCAAACcctcatttttcaactacccagAAC
TCTGGTCTTTTTCCTGCTAGAAAGTGACGGTAGAATCTTGGTATATGAAG
TGGAATCTCACCCAAATCAACATCCGAAAGTGAATACTGGATACTCATCT
CAATtaaatcatgacgtcatatCATGGGAAAATTCATCTCAAGAATATAG
ATCattttcgatttgaaaacttgcaTTTGCGTCAAGGAAAAGACAATCTA
AAATTAAAAGCATGTCAAATATGTGTCTACTTCAAGTGTGGATTTTAAAC
TGTGCACACATAATTACCCAATTAAATTTTACAAACGCGTTTCATCGAAA
TTGATTTAATTGTTGGGGTTTGGCAAAAAAAGTGCCTTAAAAGCAGACTT
ATATTTCATCACCAAGCTTTAATAATGCTTTAAATGGAGGATAAAGACAG
CTTCCTGGCAACATTTTAGTGTCATTTATTTCTTTACAGTTTATTCTTAT
ATCGTTAGCTTTTTATCCCTATTTGTCCTTATCCCGGGATGGGACTTGTA
GATTTCCGTATGGATGGGGCCCAGTAGTGTGGTGACCGGGGGTTCAATGC
GCCTTCGAGCGGCCAAGCTTTTTGGATGCTCTGAAAGTCTTTGGGGTGTT
GAGAGTCAATGGATCCTAGAGGCGCCTCTGATTGCTTCTCTGCACCAAAA
GATTAGCATCGGCATAAAAGAGGGAGGATATTCAACAAATTTCGTACCGA
CTTCGCGTAATTATTCCAAAGAAAATGGGCTCCCAAGTTTGCCTCAGTTC
TGGTCGACCCACCAAACTACAGGTGGAGACGCCCTTACTTACTTCCATAT
CAAGtattaaaatattcaatatttctttttttcgatttctNGATTCTACC
TCCAGGGATTTGATTCCACTGACCTTTCCGCTATCTTTTCCGGGATTGCC
AGCTcaagattgaaaaaatattttttctcaatgtGGTACCGAAAAAAGAT
TGTGCTGATTTAGGAAACTGGTTAACTTTCCAAACCCTCATTTTTCAACT
ATCCAGAACTCTGTTCTTTTTCCTGCTAGAAAGTGACGGTAGAATCTTGG
TATATGAAGTGGAATCTCACCCAAATCAACATCCGAAAGTGAATACTGGA
TACTCATCTCAATtaaatcatgacgtcatatCATGGGAAAATTCATCTCA
AGAATATAGATCattttcgatttgaaaacttgcaTTTGCGTCAAGGAAAA
GACAATCTAAAATTAAAAGCATGTCAAATATGTGTCTACTTTAAGTGTAG
ATTTTAAACTGTGCACACATAATTACCCAATTAAATTTTACAAACGCGTT
TCATCGAAATTGATTTAATTGTTGGGGTTTGGCAAAAAAAGTGCCTTAAA
AGCAGACTTATATTTCATCACCAAGCTTTAATAATGCTTTAAATGGAGGA
TAAAGACAGCTTCCTGGCAACATTTTAGTGTCATTTATTTCTTTACAGTT
TATTCTTATATCGTTAGCTTTTTATCCCTATTTGTCCTTATCCCGGGATG
GGACTTGTAGATTTCCGTATGGATGGGGCCCAGTAGTGTGGTAACCGGGG
GTTCAATTACGCCTTCGAGCTGCCAAGCTTTTTGGGTGCTCTGAAAGTCT
TTGGGGTGTTGAGAGTCAATGGATCCTAGAGGCGCCTTTGATTGCTTCTC
TGCACCAAAAGATTAGCATCGGCATAAAAGAGGGAGAATATTCAACAAAT
TTTGTaccgagtttgaaaaatgggcTCCCAAGCTTGCCTCAGTTCTCGTC
GACCCACCAAACTACAGGTGGAGACATCCTTATTTACTTCCATATCAAGt
attaaaatattcaatatttctttttttcgatttcCTTTCAGTCGATAAAG
TTGAAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGC
AGCCGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAAT
GAACCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGAtgcatc
aaaacaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAAT
GACAAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAAC
TCAAACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCT
ATGATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAG
CATGATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAAC
TTTAATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGC
ATCGTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtttatgatttt
ttgaaatactttgattTCTCAATTGGAATACCTTCAGATGAAATACATTG
GTACCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaa
aaatcttttggaaGATGTTTGGAAAGTGGCG Coding sequence (CDS) from alignment at sc0000021:549843..556023+ >TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=CDS|length=3519bp|location=Sequence derived from alignment at sc0000021:549843..556023+ (Clytia hemisphaerica)
ATGGATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGT
CAATCTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCT
TGAGAAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTA
TACGATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTAT
AACGACGGATATCATTTTTAAAGATTATCGATTTGAAAGTGATGCTAGAA
AAACAACCAAGaTTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTA
AAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATAT
GTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGAC
GAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGCATCAC
AAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAA
TACACAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTT
CCTGCCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAAC
TCTGAAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCG
ACCTGGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCG
ATGAAGTTGTCATGCTGAtgcatcaaaacaaaggaactCTCATTCAGAAT
TATGTACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACA
CCACTTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTC
TCACCGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCC
AAATCAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCA
TGCTCCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCAT
CTTGCTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGG
TTGTGGAGACaagtttatgattttttgaaatactttgattTCTCAATTGG
AATACCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTT
TGGTTTACTTCAacgttttataaATGGATAAATATTGGAAAACGTGTCTA
CTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACCAGGACGATCTCC
TTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATCATTTTCCTGAAT
ATCTTCATAGTGAGGTAGATGTATACGATAAAAACATACCCCCAAAACAT
TGTTCAGAATTGGTCCAAATTATAACGACGGATATCATTTTTAAAGATTA
TCGATTTGAAAGTGATGCTAGAAAAACAACCAAGaTTTGCCGTAAAGCGT
TACTCAAGTTATCGAATATTGTAAAATCATATTGGAAAGGAACGTTGAAA
CTTCTTGTCATTCAAGGTTATATGTCATCACCAGAAAAAGAAGTGGAAAA
CGATAAACTACATATGCTAGGACGAGCATTTAATCTTGAATTAAAACTAA
GTAAAAATCCAAGCAAGCATCACAAAGTAGCTGATCATGTCATTTCAAGA
CTAGGGGAACTTGCATATAGAAATACACAATTTCAATATGTTAGATTTGA
CGAAGGTGGATATCTTCATGTTTCCTGCCCATGCGAAgTCGATAAAGTTG
AAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGCAGC
CGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAATGAA
CCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGAtgcatcaaa
acaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAATGAC
AAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAACTCA
AACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCTATG
ATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAGCAT
GATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAACTTT
AATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGCATC
GTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtttatgattttttg
aaatactttgattTCTCAATTGGAATACCTTCAGATGAAATACATTGGTA
CCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaATGG
ATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAAT
CTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAG
AAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACG
ATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACG
ACGGATATCATTTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAAC
AACCAAGaTTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTAAAAT
CATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATATGTCA
TCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGACGAGC
ATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGCATCACAAAG
TAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAATACA
CAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTTCCTG
CCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAACTCTG
AAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCGACCT
GGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCGATGA
AGTTGTCATGCTGAtgcatcaaaacaaaggaactCTCATTCAGAATTATG
TACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACACCAC
TTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTCTCAC
CGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCCAAAT
CAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCATGCT
CCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCATCTTG
CTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGGTTGT
GGAGACaagtttatgattttttgaaatactttgattTCTCAATTGGAATA
CCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTTTGGT
TTACTTCAacgttttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002631-exon-sc0000021-1491911889:549843..550138 | TCONS_00002631-exon-sc0000021-1491911889:549843..550138 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1510915933:549843..550138 | TCONS_00002631-exon-sc0000021-1510915933:549843..550138 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1575043694:549843..550138 | TCONS_00002631-exon-sc0000021-1575043694:549843..550138 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1491911889:552515..552818 | TCONS_00002631-exon-sc0000021-1491911889:552515..552818 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1510915933:552515..552818 | TCONS_00002631-exon-sc0000021-1510915933:552515..552818 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1575043694:552515..552818 | TCONS_00002631-exon-sc0000021-1575043694:552515..552818 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1491911889:555384..556023 | TCONS_00002631-exon-sc0000021-1491911889:555384..556023 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1510915933:555384..556023 | TCONS_00002631-exon-sc0000021-1510915933:555384..556023 | Clytia hemisphaerica | exon |
| TCONS_00002631-exon-sc0000021-1575043694:555384..556023 | TCONS_00002631-exon-sc0000021-1575043694:555384..556023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:549843..556023 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007275 | multicellular organism development |
| GO:0007267 | cell-cell signaling |
| GO:0006508 | proteolysis |
| GO:0016539 | intein-mediated protein splicing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008233 | peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007267 |
cell-cell signaling |
| biological_process |
GO:0016539 |
intein-mediated protein splicing |
| biological_process |
GO:0007275 |
multicellular organism development |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0008233 |
peptidase activity |
Blast
BLAST of TCONS_00002631 vs. Swiss-Prot (Human)
Match: IHH (Indian hedgehog protein OS=Homo sapiens GN=IHH PE=1 SV=4) HSP 1 Score: 129.798 bits (325), Expect = 2.664e-33 Identity = 106/383 (27.68%), Postives = 168/383 (43.86%), Query Frame = 3
Query: 93 CGPGRSPSHSRFKRLRK---------GDHFPEYLHSEVDVYDKNIP--PKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIVKSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHHKVADHVISRLGELAYRNTQ--FQYVRFDEGGYLHVSCPCEVDKVE--SRCFPSNSEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQNYVQITTDNDKSITISRHHLIFVSKTQTK--------YAKDVLTGD--LLFTYDSLTKKAAKSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFWLWRQVYDFLKYFDFSIGIPSDEIHWYP 1166
CGPGR SR + RK + PE Y+ I + EL DIIFKD R T+ C+ L L+ V + W G +KL V +G+ E+ LH GRA ++ +D ++ G LA + F +V ++ ++H S E CFP+ ++V L++G+R + +RPGD VL M ++G F +V++ + + L V T D + + ++ HL+F + T+ +A V G L+ L ++ TH+ G +APLTK GTL+V DV ASC+A H ++ FW R ++ L + ++ P + +HWYP
Sbjct: 28 CGPGRVVG-SRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPG-VKLRVTEGWDEDGHHSEES--LHYEGRAVDI------------TTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTADNHTEPAARFRATFASHVQPGQYVLVAGVPGLQPARVAAVSTHV-----ALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLR-LFHSLAWGSWT---PGEGVHWYP 385
The following BLAST results are available for this feature:
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