TCONS_00002633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002633
Unique NameTCONS_00002633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002633 ID=TCONS_00002633|Name=TCONS_00002633|organism=Clytia hemisphaerica|type=transcript|length=776bp
TAGCTTCTTATCAGCGCGGAGTGAAAAAATATAAGCATTTATCCTATTTT
GGATAAAATGTACTAAATAAGAGAAACAGTATTTTTGTTTACTCTCTTTC
CCGtaataaaaaagatgaaaaattaaaaaggtttGAGTGGACGAAAAGTG
TCGACAGCGTTCAATCGTGTCTGTTACAATTACTGTTTAATACATCTTAA
TTTCTATATCTTCAAAACATGAGTcaagtttttactaaaagaattAGATG
TTTAACATCTGAAGTGTTTCAAGAAGCCGATTTGGAAGATATTGTTCAGC
ACAACCGATTCAGGTTCGACAATAATCTCCGTAAAAAGCCCTTCTTAGGG
TTTTATTCTACAGTCAATGGGTATCATCACTTTCACGTGAGACCCTACTC
ATGCAGGATGACTTGTATGAGAGAACCAGAAAACAATTATGACCCAAAGG
TGATCAAAATCCTGAAAGAAGATGGTACATGTGTTGGAAGGATGCCAGTT
CATGCCGAGTCAGCAGAATTTCGGAATCAATTTCGCTTAGCTCAGCGGAA
TtccaagtatttttctgaacTACGCATGCGTACTACTTAAAAGTTGAATA
ACTTCTGAACGCACGCTGACTGGTGGATCAGACTTCACAAGCATACTATG
CTGGCtccaaatttcttaaatttatgcaaaacttgacgcggatctctgaa
tttgttcagaaaatcaactttttcttttatttctcctaactaagctatcg
attttatcttatttaggataattcat
Run BLAST on NCBI

protein sequence of TCONS_00002633-protein

>TCONS_00002633-protein ID=TCONS_00002633-protein|Name=TCONS_00002633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MSQVFTKRIRCLTSEVFQEADLEDIVQHNRFRFDNNLRKKPFLGFYSTVN
GYHHFHVRPYSCRMTCMREPENNYDPKVIKILKEDGTCVGRMPVHAESAE
FRNQFRLAQRNSKYFSELRMRTT
Run BLAST on NCBI

transcript from alignment at sc0000021:564623..565790+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002633 ID=TCONS_00002633|Name=TCONS_00002633|organism=Clytia hemisphaerica|type=transcript|length=1168bp|location=Sequence derived from alignment at sc0000021:564623..565790+ (Clytia hemisphaerica)
TAGCTTCTTATCAGCGCGGAGTGAAAAAATATAAGCATTTATCCTATTTT
GGATAAAATGTACTAAATAAGAGAAACAGTATTTTTGTTTACTCTCTTTC
CCGtaataaaaaagatgaaaaattaaaaaggtttGAGTGGACGAAAAGTG
TCGACAGCGTTCAATCGTGTCTGTTACAATTACTGTTTAATACATCTTAA
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGATCCGCGTCTTTATTACTCTCTA
AATCAATTGTGCTCATACAGAAGATCATTTTAAACCAAAAGTTAGCTTCT
TATCAGCGCGGAGTGAAAAAATATAAGCATGTATCCTATTTTGGATAAAA
TGTACTAAATAAGAGAAACAGTATTTTTAATTACTCTCTTTCCCGtaata
aaaaagatgaaaaattaaaaaggtttGAGTGGACGAAAAGTGTCGACAGC
GTTCAATCGTGTCTGCTACAATTACTGTTTAATACATCTTAATTTCTATA
TCTTCAAAACATGAGTcaagtttttactaaaagaattAGATGTTTAACAT
CTGAAGTGTTTCAAGAAGCCGATTTGGAAGATATTGTTCAGCACAACCGA
TTCAGGTTCGACAATAATCTCCGTAAAAAGCCCTTCTTAGGGTTTTATTC
TACAGTCAATGGGTATCATCACTTTCACGTGAGACCCTACTCATGCAGGA
TGACTTGTATGAGAGAACCAGAAAACAATTATGACCCAAAGGTGATCAAA
ATCCTGAAAGAAGATGGTACATGTGTTGGAAGGATGCCAGTTCATGCCGA
GTCAGCAGAATTTCGGAATCAATTTCGCTTAGCTCAGCGGAATtccaagt
atttttctgaacTACGCATGCGTACTACTTAAAAGTTGAATAACTTCTGA
ACGCACGCTGACTGGTGGATCAGACTTCACAAGCATACTATGCTGGCtcc
aaatttcttaaatttatgcaaaacttgacgcggatctctgaatttgttca
gaaaatcaactttttcttttatttctcctaactaagctatcgattttatc
ttatttaggataattcat

Coding sequence (CDS) from alignment at sc0000021:564623..565790+

>TCONS_00002633 ID=TCONS_00002633|Name=TCONS_00002633|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000021:564623..565790+ (Clytia hemisphaerica)
ATGAGTcaagtttttactaaaagaattAGATGTTTAACATCTGAAGTGTT
TCAAGAAGCCGATTTGGAAGATATTGTTCAGCACAACCGATTCAGGTTCG
ACAATAATCTCCGTAAAAAGCCCTTCTTAGGGTTTTATTCTACAGTCAAT
GGGTATCATCACTTTCACGTGAGACCCTACTCATGCAGGATGACTTGTAT
GAGAGAACCAGAAAACAATTATGACCCAAAGGTGATCAAAATCCTGAAAG
AAGATGGTACATGTGTTGGAAGGATGCCAGTTCATGCCGAGTCAGCAGAA
TTTCGGAATCAATTTCGCTTAGCTCAGCGGAATtccaagtatttttctga
acTACGCATGCGTACTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001424XLOC_001424Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002633-proteinTCONS_00002633-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002633-exon-sc0000021-1491911889:564623..564815TCONS_00002633-exon-sc0000021-1491911889:564623..564815Clytia hemisphaericaexon
TCONS_00002633-exon-sc0000021-1510915933:564623..564815TCONS_00002633-exon-sc0000021-1510915933:564623..564815Clytia hemisphaericaexon
TCONS_00002633-exon-sc0000021-1575043694:564623..564815TCONS_00002633-exon-sc0000021-1575043694:564623..564815Clytia hemisphaericaexon
TCONS_00002633-exon-sc0000021-1491911889:565208..565790TCONS_00002633-exon-sc0000021-1491911889:565208..565790Clytia hemisphaericaexon
TCONS_00002633-exon-sc0000021-1510915933:565208..565790TCONS_00002633-exon-sc0000021-1510915933:565208..565790Clytia hemisphaericaexon
TCONS_00002633-exon-sc0000021-1575043694:565208..565790TCONS_00002633-exon-sc0000021-1575043694:565208..565790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:564623..565790 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.375426	0.11814	0	0.277247	0.184387	0.133357	0.402543	0.559667	0.106391	0.503924	0.380357	0.245204	0.314316	0.32736	0.343751	0.228774	0.469718	0.507471	0.4656	0.632314	0.185331	0.354101	0.286971	0.373177	1.07528	0.856448	0.874671	1.9071	0.347245	0.154593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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