TCONS_00002638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002638
Unique NameTCONS_00002638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002638 ID=TCONS_00002638|Name=TCONS_00002638|organism=Clytia hemisphaerica|type=transcript|length=874bp
CTTCATACCACTTCGGCTTCTTGTTGCTTATCGTTTTCAGTCAAGGTTTT
TGTAttaattttcagataaaataaagttttaaagatGTTGGCGTTGAGAA
GTTTGTTGGCAATTTTGACGAtcacaacaaatttgttttctaCATCCTTT
TCATCTATCATCGATGAAGAAGCACAGAAGATAAAGAAAGCAGACAATCA
AAAAACTCACCCAAAGATATTGGAATTCAACAAAAACAGTCAAAACAGAC
CAACAAAATGCCAAGTATGCCGTATTATGGTACACGAAATAGAACTGGAG
TTGAATAAGACGAAGAAtagcaaacaaaaaattcgttTCAGTAATAGCTT
GGAtggaagaaagaaagaaaacttaTCTTACAAAACTTCaGAGTTGAGAC
TCATGGATGTTTTGGACATGGTATGTGGAAATGTGGATTACTATCGAGTC
ATTGCTGGTCCACAATTCCCTTATCTAAGGAACGtgaaaaGTATGTATAG
AATCGAACTTGAAAAGGCGATGAAAGAAAGTGGTGTTGGTTTAACTTTGG
ACGCTCCTCCCCAGACTGTTGATGACCCGACCGCTGAAATAAAACGATTG
CATTTCGAGTGTGTTCAAATGGTAGAAGAATATGAAGAAGAAATATTAGA
ATGGTTCAAAACTAATCAAGATATCCCACCAATCGATTACATATGTAGAG
AACGAGTGTTGCAACATGGCACGAAAGaTTGTCTGGATGCGACAACAGAG
AGTCCCGAATGGGGAAGTCAAATCGTTAAAACCACTACTGATCAAGGAAT
ATATAATCTTCTAAAGCATAGTAGGAGTGAGCTGTAAATTTTATCATTAA
CTATTGTAACTTTAGAATTCCgat
Run BLAST on NCBI

transcript from alignment at sc0000021:617917..622719+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002638 ID=TCONS_00002638|Name=TCONS_00002638|organism=Clytia hemisphaerica|type=transcript|length=4803bp|location=Sequence derived from alignment at sc0000021:617917..622719+ (Clytia hemisphaerica)
CTTCATACCACTTCGGCTTCTTGTTGCTTATCGTTTTCAGTCAAGGTTTT
TGTAttaattttcagataaaataaagttttaaagatGTTGGCGTTGAGAA
GTTTGTTGGCAATTTTGACGAtcacaacaaatttgttttctaCATCCTTT
TCATCTATCATCGATGAAGAAGCACAGAAGATAAAGAAAGCAGACAATCA
AAAAACTCACCCAAAGATATTGGAATTCAACAAAAACAGTCAAAACAGAC
CAACAAAATGCCAAGGTCAGTATAGAATTcagaatgtaaaaaaaaacttt
ctacgCTACAGCCATAAAAATAAGGATACAATgcactctcgcttattcga
aattttattattcgaacctttctttaattcgaacttgtttccagtccccA
CCAAGGAGAAAGCCTCTTAAAATACTTACGAACTTATTTGAATTTCTCTT
TAATAAAACACACAAGATTCtccgttcgagttcgaaatagcgagagtcaa
ctgaaCTCCATTAAAGACCCATAAACTTTGTTAGACGCTTGTGGGTTTTA
GTTTAAGTTCAAAATTTTCCGAACGCACCCTCAATACAAGGTGGTCCCAA
TCTAAATACTTACGCTGGACACTTAAGAAAAGCGACCTACCTAAGGTGCA
GCCCTTAAAGGTACTTCTTTGCAGTGTAAGAATTGAATTTAAAAGCCCAC
CTCGGGTTTTTACCCACCTACTTCCGATACCTAAAATATCTTTATCAACG
GAATCTCTTGCTAAGACTATTGGAAATAAAATCAAATTGTAAACAATAGA
TTGGGCTAtcccagaaatagtctgtatcCCCCATGTCGAGGAAGTGTGAC
GTCCAgtgtggtctggaaaataaaaaaacctaaggggtctggtttttcga
gtgtaaaaatccagtgtggtcagtaaaatgagttggaaaatccagggtgg
tcagtaaaatgagttagaaaatccagggtggtcattAAAATGAGTTAGAA
AATCCAGCGTGGTCAGTAAAACGAGttggaaaatccagggtggtcagtaa
aatgagttagaaaatccagggtggtcagtaaaatgagttggaaaatccag
ggtggtcagtaaaaagAGGTAGAAAGTCCAGGGTGGCCCAAAAAAGAGAG
gagaaaaaatccaaggggtcttgaaaaattgaaataaaatccaGTGGGTC
CAAAAGAGACCTCTTCAACATAGGGGTACAAGTTTTTTCTGAAATAGCCT
TACTGGTTTTGGACTGATGAGCTGACTCGAAATTGCTTGTTTTCATTTAG
TATGCCGTATTATGGTACACGAAATAGAACTGGAGTTGAATAAGACGAAG
AAtagcaaacaaaaaattcgttTCAGTAATAGCTTGGAtggaagaaagaa
agaaaacttaTCTTACAAAACTTCGTAAGTTTGTTTGCTTGTCATATTCT
ACATCTACGGTGCCATTTTGGAGAACGACCACCCAGCTTTCTGGTGTCAG
CTTCAATGGATACATCAATAATGTCTTGTGATGCCATTAATAGGATCTAG
AATAAAAATAATCATTGAAATTATCCTGTTTTAGTAACTCGGTGAAAATT
TTACAGTCCGAAGAAGTAAAATTACGGAGCTGAAAGCTTGAACCAATGGG
GATTTCCAAAATAATTTTGTCTTTTCTAGTGAGGAAGAGAGTTAAATGTA
ATTTGAACTATAATGGGTAAAATTTTagttatttttccattttttccaag
TGTATAAGACTTAAGGTGGTCAATTCATCTtggcttttcaaaaaaaactc
tttaaaactttttaccccctagaGAGTTGAGACTCATGGATGTTTTGGAC
ATGGTATGTGGAAATGTGGATTACTATCGAGTCATTGCTGGTCCACAATT
CCCTTATCTAAGGAACGGTAAGTCATGCAATAATTTAAtacctaaatttt
taatatcTAGAATGAGGCTTTGTGTTGCGAGAATCTCAGTAATTCGACAA
TAAGACCATTCACGTTCATGTCATTCATAAGACAtattcagacgttacgg
tttcgtatgACTCCGGTATGGTTTCCGTGATTGAGTGTGTTCTTATTAGT
tttggaacgtttcggagcaagaaaatggAGCAGTTCCATTCCGATGAAAA
TTTGTAACGTCTTCGTTTCTAAACGTTTCGagtttgacgttcacacttgc
gATACGGAACTATAACGTCTGAACATATAGTCTAAGAGAATGGTCCTCTC
TCCGTGTAATTGGCACCTCAAAGATCGAAATAGAGAGAAAAGGTTGATAA
GTCATTGGCGCCTTGAAGAGTGAAGTGGAAAGAAAGGCTTAAAAAATGTA
TCCTTTTGACATCCCACGTATTTCAGAATGGATATGAAGGCATAACATTT
TCCAGTTTAAATCCTTCAGTACTTTAGAAAACTAAAATTTAAGGACTTCT
TCAAAATCACGGTGCGTCAACTTCAAATACAATTTTGGGTCAAGTTTGGG
TGCGgtggaaagctcttttcaagATCTATCAGCGTGCTGCTTTATGTATT
AGGTCCTAAATCAAAATTACAGGTAGCCGGAAGAAtcattcaaaatgaaa
gaaatcttttcttttgatGGCTGACTACGagtaaatgttgtttttttttc
agtgaaaaGTATGTATAGAATCGAACTTGAAAAGGCGATGAAAGAAAGTG
GTGTTGGTTTAACTTTGGACGCTCCTCCCCAGACTGTTGATGACCCGACC
GCTGAAATAAAACGATTGCATTTCGAGGTATTTGATATTCACCATATAAT
CTTGAATCTCTTCATGTCTCGTCATAATTTTTTATCCAAATACGACGAAT
TAATTTTAAGTGAGCTCGCCAGCCAAGAAAAATCAACCAAAGATTAGATA
AGCATTATTGATATGTTACTTTGCTGGAAAACCAAGTTCAGTTGACGCTC
TATAATTCGATTTGCGAGGGGAAtctgattttcatcgaataagagagcat
atcgaatagtagaacgtcgtatttgagagtttcttgttaacAGGGACTtt
cgattttcatcgaatagtagaacgagaaattagagagcgtcaactgtaat
atTATATTACTTTAGACAGTCTACGATTATCGATTGTTTTTTATGTTATT
ACAATAACCGCGAAAACCGGCAGTTATCTGTGAACAGAACAGAACAAACG
AATAAGGAGGGGGTATtcaaagggataatcagatggtttgagatatttag
attaCAGAAACCCTCTGTGGTCCTTAgtaaaaagtatttttgtgtaacaa
tttttcattttgaaaatgggttctgacacggttcttacgttgaaattctg
ttgttttcatcctaaaagccaaaaacttgtaacttaaatatctcgACTTG
AGGAAAAagttaggcaaaaatattttgagatttttctcaggacaatagaa
ggatcccacatgccaaattaaaaaccatctgattatccctttaaagcaTT
TGAACCAAGATATGGCATTTATTCAAGATATTGTTACAGTTAGGCTTGAA
AACGAAAATTGGTTAACaaaattgactttttgaaatCCCCATCGCATTTT
CTTCATCACAGTGTGTTCAAATGGTAGAAGAATATGAAGAAGAAATATTA
GAATGGTTCAAAACTAATCAAGATATCCCACCAATCGATTACATATGTAG
AGAACGAGTGTTGCAACATGGCACGAAAGGTATGTTGAGAAAGTTCGGTT
gggacaaattttccccaaaacttactattcgaggattagccataaattta
tgccaaacttatatctaccAACTCACACTTACGTCCGACTACCtgattgg
tttctacccctaatctaggccataggcaaatggaaagcTAAATTGATTAC
ATATGTAGAGAACGAGTGTTGCAACATGGCACGAAAGGTATGTTGACAAT
AAGTTATGGGTCTTTAGATCTTATACTCTCTCCAGCCCACTGGTTGGTCC
TTTCCAGACCCAACCATTAACCTTTCATAACTTCGAGGCTAGCGCCTAGG
AGTTTTTGTATTACATATTAAGAGTACATTTTTTCAGTTCAGAAAGTGCA
AATCCATGGATAAGTGATAATGATAAAGTCAATTTTACTGATTAGTCTTA
AAAGAAAGACGTCTTTTACTAAttgtgaaaaaagatttaaGTATTTATCT
AACTAATCAAATGAAGTctttcataaaaattcaaacatGGAATGTTCAGt
gattacacgtttttattctttattagaacccagtttatatgACGAACATt
cgttgaaaaattaagaacatcgtaagagcATGCCCAgtctcagtttggaa
aaaaatgacaagaaactacaattttttcctcttttcaagcagttttaacc
gaacttagggatgaATTTTCTAACATCGAGAGTctaatattgtccaaatt
ttaccaattttaagtgctctttattttgcatgatattgtcaatttagagt
agtctgaaaaattaagaacacgtttaagaacattttaggctgaaaactgc
caaaaaaataagcatatccaggctcagccaaattttagatgttctaataa
aaaaaaaaacgtgcagcAGAATCAACACTTTCTcaacttttttattattt
ttatagaTTGTCTGGATGCGACAACAGAGAGTCCCGAATGGGGAAGTCAA
ATCGTTAAAACCACTACTGATCAAGGAATATATAATCTTCTAAAGCATAG
TAGGAGTGAGCTGTAAATTTTATCATTAACTATTGTAACTTTAGAATTCC
gat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001427XLOC_001427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002638-exon-sc0000021-1491911889:617917..618181TCONS_00002638-exon-sc0000021-1491911889:617917..618181Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1510915933:617917..618181TCONS_00002638-exon-sc0000021-1510915933:617917..618181Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1575043694:617917..618181TCONS_00002638-exon-sc0000021-1575043694:617917..618181Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1491911889:619217..619340TCONS_00002638-exon-sc0000021-1491911889:619217..619340Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1510915933:619217..619340TCONS_00002638-exon-sc0000021-1510915933:619217..619340Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1575043694:619217..619340TCONS_00002638-exon-sc0000021-1575043694:619217..619340Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1491911889:619739..619833TCONS_00002638-exon-sc0000021-1491911889:619739..619833Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1510915933:619739..619833TCONS_00002638-exon-sc0000021-1510915933:619739..619833Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1575043694:619739..619833TCONS_00002638-exon-sc0000021-1575043694:619739..619833Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1491911889:620569..620693TCONS_00002638-exon-sc0000021-1491911889:620569..620693Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1510915933:620569..620693TCONS_00002638-exon-sc0000021-1510915933:620569..620693Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1575043694:620569..620693TCONS_00002638-exon-sc0000021-1575043694:620569..620693Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1491911889:621528..621645TCONS_00002638-exon-sc0000021-1491911889:621528..621645Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1510915933:621528..621645TCONS_00002638-exon-sc0000021-1510915933:621528..621645Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1575043694:621528..621645TCONS_00002638-exon-sc0000021-1575043694:621528..621645Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1491911889:622573..622719TCONS_00002638-exon-sc0000021-1491911889:622573..622719Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1510915933:622573..622719TCONS_00002638-exon-sc0000021-1510915933:622573..622719Clytia hemisphaericaexon
TCONS_00002638-exon-sc0000021-1575043694:622573..622719TCONS_00002638-exon-sc0000021-1575043694:622573..622719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:617917..622719 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.755427	0.767505	3.3952	3.75646	0.472049	0.389806	0.648608	0.23095	1.80955	1.36337	1.09058	2.25944	6.62821	5.78799	0.964108	1.86938	9.43947	9.8878	3.63962	3.1421	4.7542	6.18559	0.804688	0.27325	0.20725	0.211155
Blast
[Close]
BLAST of TCONS_00002638 vs. Swiss-Prot (Human)
Match: CNPY4 (Protein canopy homolog 4 OS=Homo sapiens GN=CNPY4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.410e-17
Identity = 52/181 (28.73%), Postives = 98/181 (54.14%), Query Frame = 1 
Query:  223 EFNKNSQNRPTKCQVCRIMVHEIELELNKTKNSKQKIRFSNSLD-GRKKENLSYKTSELRLMDVLDMVCGNVDYYRVIAGPQFPYLRNVKSMYR-IELEKAMKESGVGLTLDAPPQTVDDPTAEIKRLHFECVQMVXXXXXXXXXWFKTNQDIPPIDYICRERVLQHGTKDCLDATTESPE 759
            E + +++  P+KC+VC+++  E++ EL++T  S++ +     LD G++K ++ Y  SE RL + L+ +C  +  Y V A  +   LR  K   + +   K + + GV + L  P +  D+P+ E+  L  +C  M+EE+E+ + +W+  +Q+ P  +++C   VL      CL  T    E
Sbjct:   26 EEDDDTERLPSKCEVCKLLSTELQAELSRTGRSREVLELGQVLDTGKRKRHVPYSVSETRLEEALENLCERILDYSVHA-ERKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWDEPSVEVTYLKKQCETMLEEFEDIVGDWYFHHQEQPLQNFLCEGHVLPAAETACLQETWTGKE 205
The following BLAST results are available for this feature:
BLAST of TCONS_00002638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNPY41.410e-1728.73Protein canopy homolog 4 OS=Homo sapiens GN=CNPY4 ... [more]
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