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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002643 ID=TCONS_00002643|Name=TCONS_00002643|organism=Clytia hemisphaerica|type=transcript|length=2158bpRun BLAST on NCBI protein sequence of TCONS_00002643-protein >TCONS_00002643-protein ID=TCONS_00002643-protein|Name=TCONS_00002643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp MAYRKGESHMEGNKKLYFPEGALLNQMEVAVVESERRKSEILKEPFVVYLRun BLAST on NCBI transcript from alignment at sc0000021:799613..817642+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002643 ID=TCONS_00002643|Name=TCONS_00002643|organism=Clytia hemisphaerica|type=transcript|length=18030bp|location=Sequence derived from alignment at sc0000021:799613..817642+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:799613..817642+ >TCONS_00002643 ID=TCONS_00002643|Name=TCONS_00002643|organism=Clytia hemisphaerica|type=CDS|length=18144bp|location=Sequence derived from alignment at sc0000021:799613..817642+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002643 vs. Swiss-Prot (Human)
Match: SNX4 (Sorting nexin-4 OS=Homo sapiens GN=SNX4 PE=1 SV=1) HSP 1 Score: 335.88 bits (860), Expect = 1.344e-106 Identity = 173/407 (42.51%), Postives = 268/407 (65.85%), Query Frame = 1
Query: 208 LNQMEVAVVESERRKSEI---LKEPFVVYLVESRPVENHLG-SEPECALWRRYSEFELLRNFLMANYPYIVLPPLPEKRPIPFQINVQKFQIAHDKFDPDFIERRRQGLECFLLRLASHPVISQDGVFRGFLKQEEGWKESVAATNWQQKVDGRFKSISASLSIKKPDQRFENIKNYAESLNTNINGILKIQQRLSTKQYAILKSHTDYGKLFSEWSAIEPEIGDTLQQAGHQMDRLASNTESILTEEEISYVDQLKEYLYFTESLRSVVRKQALRQHDLEKAEEQLSSKSKQRDEIQKEVTAAENGEELPNQGFTLKSVSTMLFGQDSLETKQEKLLACEQQVKDAEEMVKIAENDVNVFMDKSLKDYDRFKKQKVRDINEIMENYVKSQLKINKQGLQQWQQMRE 1416
L ++E++V E+E+R ++E + YL+E+R VE+ G S +LWRRYSEFELLR++L+ YP+IV+PPLPEKR +++ D DPDF+ERRR GLE FLLR+ASHP++ +D +F FL QE WKE+V T +Q K D R K+++A+ +K PD+RF ++K+Y++ L + I+ +L+++ R++ + Y + K H +YG++FSEWSAIE E+GD LQ AGH MD AS+ + IL +EE Y DQLKEYL++ E+LR+V RK L Q+DLE A + L+SK +Q +E+ VT + F+LK ++T LFGQ++ E ++ ++ E+Q+ + E+ +K + F+ + D +RFK+QK RD+ E + +Y Q+ + K+G+Q W +E
Sbjct: 55 LKKIEISVSEAEKRTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTDSLWRRYSEFELLRSYLLVYYPHIVVPPLPEKRA-----EFVWHKLSADNMDPDFVERRRIGLENFLLRIASHPILCRDKIFYLFLTQEGNWKETVNETGFQLKADSRLKALNATFRVKNPDKRFTDLKHYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAGHHMDVYASSIDDILEDEE-HYADQLKEYLFYAEALRAVCRKHELMQYDLEMAAQDLASKKQQCEEL---VTGT-------VRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNAWADIERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 445 The following BLAST results are available for this feature:
BLAST of TCONS_00002643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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