TCONS_00002650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002650
Unique NameTCONS_00002650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002650 ID=TCONS_00002650|Name=TCONS_00002650|organism=Clytia hemisphaerica|type=transcript|length=1243bp
caCGGCTTATTAAATTTGCTCAATGGACCGTTTTATGGTTCATTGGTTAT
GCcattaaaatattatttgatcATCTTACCTTCTGTATAATACCTGTTTT
TAACGAGATCCATTcgaatttcttcactttcaaaaaagtttaatttctta
ACCGCTTTGTATCTTCTTCGAGCCGTCTTGACGAATCTGGTATATTCGAT
TCCAAGATGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTGGCATA
CACATCCGCTAAATCTGTTAGCCGTGTGAAGAAATCTGCTAACCCATGTG
GCTGCACTCCTGCTCCAGCTTGTTGTGCCccaccaccacctccaccacca
gcCCCAATGTGTGCATGTGCCCCAGCACCAGCCCCATGTGGTTGTGCCGG
AGGAGCCGGTGCTGCCCCACCAATGCCAGGACCCCCAGGACCGGGAGGAC
CACCCGGAGCCCCAGGAGGCCCAGGAGCTATGGGACCCGCAGGACCTCCA
GGACCCCCAGGAGCCGGAGGATGCGGAGGACCACCTGGACCACCAGGACC
ACCAGGACCTCCAGGAGCACCAGCCccacctccaccaccaccacctccAA
TCTGTCTCCACCATTGTATGAAGATCTGCCCAGTCAGTGCCCCTGCCTGT
GCCCCACCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCACC
ATGTGCCGCTCCACCATGTGCCCCACCACCACCATGCCCNGTGCCCCACC
ACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCACCATGTGCCG
CTCCACCATGTGCCCCACCACCACCATGCCCAGCACCTTGTCCACCACCA
ATGCCATGTGCTGCTCCACCATGCCCGCCACCTATGCCATGCCCACCACC
ATGTCCACCACCTTGCccaccaccacctccaccaccaaTGTGCACCTGTG
GGCCACCACCATGCTCCTGTGGAAAATAGAGTGGATAATAAAACGACGCA
TTATTGTTAATAGATGTTAAATGAGTCATTTAAGCAAATCACTTTGCttg
atttcaatttcaacaaaatcaaTCTCCAGAAGATACTTTCCTTGAGGAAT
GAATATGGAGATCTTAACTTTTACGTTAAGAAATTTCCTCATAAGATTTT
TCTTATGTATAATTTCAATAACTATACTATGAcacatatttttataaata
aaagaatctctagaaaattataattgaattgaaaatattttct
Run BLAST on NCBI

transcript from alignment at sc0000021:1009995..1012839+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002650 ID=TCONS_00002650|Name=TCONS_00002650|organism=Clytia hemisphaerica|type=transcript|length=2845bp|location=Sequence derived from alignment at sc0000021:1009995..1012839+ (Clytia hemisphaerica)
caCGGCTTATTAAATTTGCTCAATGGACCGTTTTATGGTTCATTGGTTAT
GCcattaaaatattatttgatcATCTTACCTTCTGTATAATACCTGTTTT
TAACGAGATCCATTcgaatttcttcactttcaaaaaagtttaatttctta
ACCGCTTTGTATCTTCTTCGAGCCGTCTTGACGAATCTGGTATATTCGAT
TCCAAGGTATTTGCTcatcatattttgatatttttacttGAGAATATTTC
AGATTTCATTTTCTCACAATACTGGTAGATTATGAATTGGAGATGTATCG
GAATAAAGCTTGGTTTNTCATTTGCTCACAATACTGGTAGATTATGAATT
GGAGATGTATCGGAATAAAGCTTGGTTTCCaatatcttttttaatttcaa
ggaaaaaatcttttgttattGGATCGGCCATTTGTTCTGATTCAATATCT
TCGAAAACATCACAATAGATCTCATACATTGCCTGAAATGTATCAAAGCT
GAAATCAGGGTATTGGTCATGATAATCTAGTAAAAGATAGAAAGATTATT
ActaagaaaacatttttaataatgatattctcttttattttctttacagA
TGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTGGCATACACATCC
GCTAAATCTGTTAGCCGTAAGTAtcttattttattcattttcaaatacag
ttgacgttctactattcgatgttctactattcgataggcttccttattcg
atgaaatttatagtccccgtcaacaagaaattatcataaacgacgctccc
ttattcaataagctcccttattcgatgaaaatccaagtCCCCTtcaagat
cgaattagagagcgtcaactgtacctAAATGCAAGAAATTCCTCTTCTTA
TTCTTGCTTTATTCCCAATCTAAAAATGTTTTGGATTTAGCGCGTATCGA
AAGACAACAATAAATCCCACAAAGTCGTGTACAAATTCGGATATTTGCAG
CGAAGAAGATATTGTACTTTGATGCAATATTTTAAAGTTGCTTTTACGAT
ATTACGATAAGAATTACGATATTCATGGCTATTTTGCGCGCATTTCACAA
CATTTTTGGATACAGGATTTATATTACGcacgaaaaaatttgaatataat
tcgAAAGGACTCGAAAACTTAANACAGGATTTATATTACGcacgaaaaaa
tttgaatataattcgAAAGGACTCGAAAACTTAAACTAATCTTACATATC
TCCGGAGAAACCTTCCTTACTCAATTccaaaaaatccaaactttGTTATA
TGACAGTCATTACAACTTTGTGTGAAAGAGAAAGActtttgttccttttt
tcacaaaaattattGAAACTGCATGATGAGTCTATATAATATCCATTTGA
CATAATTTATCTAAcacatatatatatatttatagCATGTTAGATATTAT
ATTGTTGCATGGTTAAATGCACCTCAAAATCTGATTCTTTTGGCTTTAAA
CTGATAGAAAACTATATACCTATACACAATCATTTTATACAAAAACATGt
acagcaaaaatttcaaaacaatctgCTTTTAACCAGGAACAAAATGGTGA
CTCTGGTTCGATTTCATTGGATCATCATTTCATAGTTATAAACAAGCAAC
TTGCTGAAACAGGATGTGCCGCCACAACTTCAAAAATACTTACTAAAGTT
TCANTTCATTGGATCATCATTTCATAGTTATAAACAAGCAACTTGCTGAA
ACAGGATGTGCCGCCACAACTTCAAAAATACTTACTaaagtttcaatatt
ttttttggaaaagagaattaaaaaaagagcTTTACTCTTTCACACCTAAT
GGACATAATTTATTGTTCCTTTTAGGTGTGAAGAAATCTGCTAACCCATG
TGGCTGCACTCCTGCTCCAGCTTGTTGTGCCccaccaccacctccaccac
cagcCCCAATGTGTGCATGTGCCCCAGCACCAGCCCCATGTGGTTGTGCC
GGAGGAGCCGGTGCTGCCCCACCAATGCCAGGACCCCCAGGACCGGGAGG
ACCACCCGGAGCCCCAGGAGGCCCAGGAGCTATGGGACCCGCAGGACCTC
CAGGACCCCCAGGAGCCGGAGGATGCGGAGGACCACCTGGACCACCAGGA
CCACCAGGACCTCCAGGAGCACCAGCCccacctccaccaccaccacctcc
AATCTGTCTCCACCATTGTATGAAGATCTGCCCAGTCAGTGCCCCTGCCT
GTGCCCCACCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCA
CCATGTGCCGCTCCACCATGTGCCCCACCACCACCATGCCCNGTGCCCCA
CCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCACCATGTGC
CGCTCCACCATGTGCCCCACCACCACCATGCCCAGCACCTTGTCCACCAC
CAATGCCATGTGCTGCTCCACCATGCCCGCCACCTATGCCATGCCCACCA
CCATGTCCACCACCTTGCccaccaccacctccaccaccaaTGTGCACCTG
TGGGCCACCACCATGCTCCTGTGGAAAATAGAGTGGATAATAAAACGACG
CATTATTGTTAATAGATGTTAAATGAGTCATTTAAGCAAATCACTTTGCt
tgatttcaatttcaacaaaatcaaTCTCCAGAAGATACTTTCCTTGAGGA
ATGAATATGGAGATCTTAACTTTTACGTTAAGAAATTTCCTCATAAGATT
TTTCTTATGTATAATTTCAATAACTATACTATGAcacatatttttataaa
taaaagaatctctagaaaattataattgaattgaaaatattttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001436XLOC_001436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002650-exon-sc0000021-1491911889:1009995..1010200TCONS_00002650-exon-sc0000021-1491911889:1009995..1010200Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1510915933:1009995..1010200TCONS_00002650-exon-sc0000021-1510915933:1009995..1010200Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1575043694:1009995..1010200TCONS_00002650-exon-sc0000021-1575043694:1009995..1010200Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1491911889:1010594..1010660TCONS_00002650-exon-sc0000021-1491911889:1010594..1010660Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1510915933:1010594..1010660TCONS_00002650-exon-sc0000021-1510915933:1010594..1010660Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1575043694:1010594..1010660TCONS_00002650-exon-sc0000021-1575043694:1010594..1010660Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1491911889:1011870..1012839TCONS_00002650-exon-sc0000021-1491911889:1011870..1012839Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1510915933:1011870..1012839TCONS_00002650-exon-sc0000021-1510915933:1011870..1012839Clytia hemisphaericaexon
TCONS_00002650-exon-sc0000021-1575043694:1011870..1012839TCONS_00002650-exon-sc0000021-1575043694:1011870..1012839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1009995..1012839 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0380075	10.4703	12.2085	249.331	287.365	95.4611	121.31	277.029	145.303	329.738	310.27	259.515	768.378	393.846	367.102	0.296256	0.267168	300.161	366.955	241.279	208.301	158.121	161.163	48.8067	15.8166	0.856281	1.01219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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