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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002650 ID=TCONS_00002650|Name=TCONS_00002650|organism=Clytia hemisphaerica|type=transcript|length=1243bp
caCGGCTTATTAAATTTGCTCAATGGACCGTTTTATGGTTCATTGGTTAT
GCcattaaaatattatttgatcATCTTACCTTCTGTATAATACCTGTTTT
TAACGAGATCCATTcgaatttcttcactttcaaaaaagtttaatttctta
ACCGCTTTGTATCTTCTTCGAGCCGTCTTGACGAATCTGGTATATTCGAT
TCCAAGATGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTGGCATA
CACATCCGCTAAATCTGTTAGCCGTGTGAAGAAATCTGCTAACCCATGTG
GCTGCACTCCTGCTCCAGCTTGTTGTGCCccaccaccacctccaccacca
gcCCCAATGTGTGCATGTGCCCCAGCACCAGCCCCATGTGGTTGTGCCGG
AGGAGCCGGTGCTGCCCCACCAATGCCAGGACCCCCAGGACCGGGAGGAC
CACCCGGAGCCCCAGGAGGCCCAGGAGCTATGGGACCCGCAGGACCTCCA
GGACCCCCAGGAGCCGGAGGATGCGGAGGACCACCTGGACCACCAGGACC
ACCAGGACCTCCAGGAGCACCAGCCccacctccaccaccaccacctccAA
TCTGTCTCCACCATTGTATGAAGATCTGCCCAGTCAGTGCCCCTGCCTGT
GCCCCACCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCACC
ATGTGCCGCTCCACCATGTGCCCCACCACCACCATGCCCNGTGCCCCACC
ACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCACCATGTGCCG
CTCCACCATGTGCCCCACCACCACCATGCCCAGCACCTTGTCCACCACCA
ATGCCATGTGCTGCTCCACCATGCCCGCCACCTATGCCATGCCCACCACC
ATGTCCACCACCTTGCccaccaccacctccaccaccaaTGTGCACCTGTG
GGCCACCACCATGCTCCTGTGGAAAATAGAGTGGATAATAAAACGACGCA
TTATTGTTAATAGATGTTAAATGAGTCATTTAAGCAAATCACTTTGCttg
atttcaatttcaacaaaatcaaTCTCCAGAAGATACTTTCCTTGAGGAAT
GAATATGGAGATCTTAACTTTTACGTTAAGAAATTTCCTCATAAGATTTT
TCTTATGTATAATTTCAATAACTATACTATGAcacatatttttataaata
aaagaatctctagaaaattataattgaattgaaaatattttct Run BLAST on NCBI transcript from alignment at sc0000021:1009995..1012839+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002650 ID=TCONS_00002650|Name=TCONS_00002650|organism=Clytia hemisphaerica|type=transcript|length=2845bp|location=Sequence derived from alignment at sc0000021:1009995..1012839+ (Clytia hemisphaerica)
caCGGCTTATTAAATTTGCTCAATGGACCGTTTTATGGTTCATTGGTTAT
GCcattaaaatattatttgatcATCTTACCTTCTGTATAATACCTGTTTT
TAACGAGATCCATTcgaatttcttcactttcaaaaaagtttaatttctta
ACCGCTTTGTATCTTCTTCGAGCCGTCTTGACGAATCTGGTATATTCGAT
TCCAAGGTATTTGCTcatcatattttgatatttttacttGAGAATATTTC
AGATTTCATTTTCTCACAATACTGGTAGATTATGAATTGGAGATGTATCG
GAATAAAGCTTGGTTTNTCATTTGCTCACAATACTGGTAGATTATGAATT
GGAGATGTATCGGAATAAAGCTTGGTTTCCaatatcttttttaatttcaa
ggaaaaaatcttttgttattGGATCGGCCATTTGTTCTGATTCAATATCT
TCGAAAACATCACAATAGATCTCATACATTGCCTGAAATGTATCAAAGCT
GAAATCAGGGTATTGGTCATGATAATCTAGTAAAAGATAGAAAGATTATT
ActaagaaaacatttttaataatgatattctcttttattttctttacagA
TGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTGGCATACACATCC
GCTAAATCTGTTAGCCGTAAGTAtcttattttattcattttcaaatacag
ttgacgttctactattcgatgttctactattcgataggcttccttattcg
atgaaatttatagtccccgtcaacaagaaattatcataaacgacgctccc
ttattcaataagctcccttattcgatgaaaatccaagtCCCCTtcaagat
cgaattagagagcgtcaactgtacctAAATGCAAGAAATTCCTCTTCTTA
TTCTTGCTTTATTCCCAATCTAAAAATGTTTTGGATTTAGCGCGTATCGA
AAGACAACAATAAATCCCACAAAGTCGTGTACAAATTCGGATATTTGCAG
CGAAGAAGATATTGTACTTTGATGCAATATTTTAAAGTTGCTTTTACGAT
ATTACGATAAGAATTACGATATTCATGGCTATTTTGCGCGCATTTCACAA
CATTTTTGGATACAGGATTTATATTACGcacgaaaaaatttgaatataat
tcgAAAGGACTCGAAAACTTAANACAGGATTTATATTACGcacgaaaaaa
tttgaatataattcgAAAGGACTCGAAAACTTAAACTAATCTTACATATC
TCCGGAGAAACCTTCCTTACTCAATTccaaaaaatccaaactttGTTATA
TGACAGTCATTACAACTTTGTGTGAAAGAGAAAGActtttgttccttttt
tcacaaaaattattGAAACTGCATGATGAGTCTATATAATATCCATTTGA
CATAATTTATCTAAcacatatatatatatttatagCATGTTAGATATTAT
ATTGTTGCATGGTTAAATGCACCTCAAAATCTGATTCTTTTGGCTTTAAA
CTGATAGAAAACTATATACCTATACACAATCATTTTATACAAAAACATGt
acagcaaaaatttcaaaacaatctgCTTTTAACCAGGAACAAAATGGTGA
CTCTGGTTCGATTTCATTGGATCATCATTTCATAGTTATAAACAAGCAAC
TTGCTGAAACAGGATGTGCCGCCACAACTTCAAAAATACTTACTAAAGTT
TCANTTCATTGGATCATCATTTCATAGTTATAAACAAGCAACTTGCTGAA
ACAGGATGTGCCGCCACAACTTCAAAAATACTTACTaaagtttcaatatt
ttttttggaaaagagaattaaaaaaagagcTTTACTCTTTCACACCTAAT
GGACATAATTTATTGTTCCTTTTAGGTGTGAAGAAATCTGCTAACCCATG
TGGCTGCACTCCTGCTCCAGCTTGTTGTGCCccaccaccacctccaccac
cagcCCCAATGTGTGCATGTGCCCCAGCACCAGCCCCATGTGGTTGTGCC
GGAGGAGCCGGTGCTGCCCCACCAATGCCAGGACCCCCAGGACCGGGAGG
ACCACCCGGAGCCCCAGGAGGCCCAGGAGCTATGGGACCCGCAGGACCTC
CAGGACCCCCAGGAGCCGGAGGATGCGGAGGACCACCTGGACCACCAGGA
CCACCAGGACCTCCAGGAGCACCAGCCccacctccaccaccaccacctcc
AATCTGTCTCCACCATTGTATGAAGATCTGCCCAGTCAGTGCCCCTGCCT
GTGCCCCACCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCA
CCATGTGCCGCTCCACCATGTGCCCCACCACCACCATGCCCNGTGCCCCA
CCACCACCAGCTTGTGCCCCACCACCATGCCCAGCTCCACCACCATGTGC
CGCTCCACCATGTGCCCCACCACCACCATGCCCAGCACCTTGTCCACCAC
CAATGCCATGTGCTGCTCCACCATGCCCGCCACCTATGCCATGCCCACCA
CCATGTCCACCACCTTGCccaccaccacctccaccaccaaTGTGCACCTG
TGGGCCACCACCATGCTCCTGTGGAAAATAGAGTGGATAATAAAACGACG
CATTATTGTTAATAGATGTTAAATGAGTCATTTAAGCAAATCACTTTGCt
tgatttcaatttcaacaaaatcaaTCTCCAGAAGATACTTTCCTTGAGGA
ATGAATATGGAGATCTTAACTTTTACGTTAAGAAATTTCCTCATAAGATT
TTTCTTATGTATAATTTCAATAACTATACTATGAcacatatttttataaa
taaaagaatctctagaaaattataattgaattgaaaatattttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002650-exon-sc0000021-1491911889:1009995..1010200 | TCONS_00002650-exon-sc0000021-1491911889:1009995..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1510915933:1009995..1010200 | TCONS_00002650-exon-sc0000021-1510915933:1009995..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1575043694:1009995..1010200 | TCONS_00002650-exon-sc0000021-1575043694:1009995..1010200 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1491911889:1010594..1010660 | TCONS_00002650-exon-sc0000021-1491911889:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1510915933:1010594..1010660 | TCONS_00002650-exon-sc0000021-1510915933:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1575043694:1010594..1010660 | TCONS_00002650-exon-sc0000021-1575043694:1010594..1010660 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1491911889:1011870..1012839 | TCONS_00002650-exon-sc0000021-1491911889:1011870..1012839 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1510915933:1011870..1012839 | TCONS_00002650-exon-sc0000021-1510915933:1011870..1012839 | Clytia hemisphaerica | exon |
| TCONS_00002650-exon-sc0000021-1575043694:1011870..1012839 | TCONS_00002650-exon-sc0000021-1575043694:1011870..1012839 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:1009995..1012839 + |
Blast
The following BLAST results are available for this feature:
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