TCONS_00002653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002653
Unique NameTCONS_00002653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002653 ID=TCONS_00002653|Name=TCONS_00002653|organism=Clytia hemisphaerica|type=transcript|length=642bp
AAAAGCTTTAGTTCGAATTCGAAACATGAAAACAATACAATGCTCAAAAT
GTGCTATTGTTTAAACTCCCATGAGAATAAAGGAAGTGCAATGGAGCATT
TGATGTTCATTATTGAGGCCAGCTATGGTCATTTAGTTTGTTTATCAGTT
TAATGAATAATTAATGAGGCATTTTGCTGGCAGCTCTGTTTCAGAATATA
GTTTGACCAGCTTCTTCAGTTGTTCAAAGATCTCGTTGGATTACAGACAT
ACTCCAAgaTGAGATCTTGTATCGCTATCGTATTGCTCTTGGCAGCAATT
GCCAATGCCAAATCAGTTCATGATGTCTTTAAGAGAAGTCCAACAGCCTG
TGCTGCACCATGCCCAGCCGCATGCGCTCCAGTTTGCGCACCAGTATGCT
GTGCCCCACCtccacctccaccaccacccccaccaccaccaccatgCCCA
CCAATTTGCCCAGTGCAATGTGTCCCAACTTGCCCACAATACTGCTGCCC
AGCCAGAAAATAGATGGGAAGAACAAGagattttatttttctacaAATCT
ACTAAACCAAGTGCAACTTCATAAAATATGAAATAGATTTTGTATCCAAA
AAATACGTagtctcttttttttcttcttttgatggaatttta
Run BLAST on NCBI

transcript from alignment at sc0000021:1033153..1039308+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002653 ID=TCONS_00002653|Name=TCONS_00002653|organism=Clytia hemisphaerica|type=transcript|length=6156bp|location=Sequence derived from alignment at sc0000021:1033153..1039308+ (Clytia hemisphaerica)
AAAAGCTTTAGTTCGAATTCGAAACATGAAAACAATACAATGCTCAAAAT
GTGCTATTGTTTAAACTCCCATGAGAATAAAGGAAGTGCAATGGAGCATT
TGATGTTCATTATTGAGGCCAGCTATGGTCATTTAGTTTGTTTATCAGTT
TAATGAATAATTAATGAGGCATTTTGCTGGCAGCTCTGTTTCAGAATATA
GTTTGACCAGCTTCTTCAGTTGTTCAAAGATCTCGTTGGATTACAGACAT
ACTCCAAggtaaaaatttgttcttatttttctttgtttttttgtattttt
ttcataattatttcaaGCATTTCAgtctatttttgtattttcttctttta
ttcatttCATTTCTTTCCTTGATTGCTCtttctttcaattttaattttgc
cAATTACATTATTATGCCATGATTGCATATatcatttcaaaattattcaa
aGTTATTATCAATTCTTTTGCAACTAAGTAGCAACAGATCCTTAAGTCTA
TATTTAGaaaagttttttccaaaaattaattaattcaaTATGAATTAGAT
AACTTAATATAATTAAGTTTTTCTGCTTCTAGGTCTTCACAGACAACAAT
GTGAccataaatttgaaaaaaatagtgaTTTTTCCAGCAATTTTTTATGA
TTGTTGATTGTTGATGAGATTGgaccaaaataatttttaaaacttctcGT
GAATCTTgaagaaaactttttctttgttacgaatcaaaaatattatataa
aaaaaatgaaaactcttgTAAAATTCTTTTCCATCCAGTTTCATATTTTT
ATCAAgtatttggcaaaatttgattaaaaaattaacgttcataataatta
tttcaataaaaaataaattatatttaaaaaagtaattttgtcacttttat
tATACAGAGAATATCTCTAACctaaaaaaacctaaaaatcttttttattt
tatttttatttttaaaataagataTGTGTATTTTTCCTTATGAAGTCAtt
aatgttaatcacttcagtgtttaAAATCGCCCAAggattttgaataattt
cttgctcattgaatttaaaaaagttaaacttGATATAATTGATTTATCTT
TAACGTTTTCAACAATTATTGCTTTAAAAGTAAAATACTAAAAGCATTTT
GCACTTTTAACAAATTTGAAAAGCTATAGAAAAAAGATCTAAAAATTTCA
TAACCTGCTTAAAATTTatccaaaaatattaaaattctgttaaaaatatt
atcttcaaaaattgcATAACATTTgctaaacaaagaaaatcaaacattcg
aacattgactagaaaaattaaaccattgtttacaaaaacaattgaaacaa
taaacAGATTTTCACACTTCAATAATTTTACACAATGCTGAATATGAGTA
AATGAATTGAACAAAAGATCATAAAGTGTATTCAACCGAAACAATAAACA
AAAGTTAATGAAccgtataatttttttctcgaacGCTGCACTGATTCGAA
TCTTTtacaatttaatttttcaaaaatcaacttCAGCCTATNTCGAATGC
TGCACTGATTCGAatctttttcaatttaatttttataaaaaatcaacttc
agCCTATCCAAAGTATAGGGTCTGAAAAAAAAGTCTGCAGCGGTAAGATA
ATAATTatatattcaaaataaaacttaataaaattaataaagtATTTTAA
ATTATCGTAATATAATAGCAATGAAAGATATATCAATAGTTAATACAATG
CAAATTGAATCTTCGTATAGGATTATGGAATGTGATTAGTTATTATAGAT
AAACTAATCAAAGTTTGGTCttgatgttttattttattttgaaattcgga
ttttcttataataccattgaatgttttctttttcttctagaTGAGATCTT
GTATCGCTATCGTATTGCTCTTGGCAGCAATTGCCAATGCCAAATCAGTT
CATGGTAAGTTAATattcattattatttttcattcttctttttcattttc
tttagtttttaaTTATGAAGCAATCATTATTAGAAAGTTTCGATTTTACA
ATACAAAATTCGAATTGAAACGAAACAAATATTATAGagtgtaaattatt
ttttgacaatATATTTGATGCCTTGAGTTTCTTCAGaacaacttttgaat
ttttaaaactcGAAATCATATTTTCCTTTGTCTGAAATTAAGATATATTA
AATTTTCTGATAATGactgtttcattttaaatttattcAACTCGTAGTCT
TTTAATCCAAAAATATGTACATATCACGACAACATTTCTCATTCCGTTTt
caatatataaaaaattataaaattactTTAAATAATAGTGACTTCAGTAC
ACATTTTTGAATTAAGTTAGCAGCATTTATCGGCTAATAATTTTGGAATG
ATGTACTCTGGAAGActttttggcttttaaaattttttggtttcTTGAAG
CACGCTAGTAATGCAACTTGAAATTATCGCTACCATTTTGATAAGAACGT
AAACTTTTTTTGCAAGTTAAGAACTGAATTTAAAAGCACGATGAGTGGTT
TATCCTATACTTTGATTAAAAATGTATCAAACTATTTTATTGCCTAAAAG
CTGCGAAAAATTATTTGCCGATAAAATGTTGCTTACTCAGATAATATGCA
TTTATAGGCAAGTTATGCAGTTTGTTTACTTTAGCATAGGGAAGTTTTGT
AATCCTTAATCCAAGTTTGCTCATATGTCACTAAGTATTATATTTTGCGC
CAATATAATTTGAGAACTTAATCCTTAAAAGTTTTGCAACTAAAGAAAAG
GGAatactctctaattcgaacctctgtaATTCAATTCTTTCTATGATTTg
cgtaattcgaatttttctgtaattcaaaAAAGTAATGTTTTGTCAATTAA
AGATCGGGAtagagagagagtcaactgtatcaTACAGTTTAAGTCGCTTT
TGCCAAAGTATTTCTATTACCAAAGCGATTTTTGAGTTTGTGAGCAAACT
TGGTTAAAAGTTAAAATTACTTGTCTTTATCAAGCAATGAAAGTTACAAA
CCACATTCAAATTATCATCCTCaatccatttttttgaaaatcgatcCATA
TTCGAAATATGAGCATTGCTTGATAAAGAACCAGGTTAAaagcatagatt
tataaagctcgaagggctagaggtaGACGTTGTGCCTTGGCTGAAAGGTG
CGCCGTGGCTAGGTAGGATATCCTACCTAGGTCATGTGACATTACAATCA
AATTTAAGCGCTTGATCAATTAGAAGCTTCAAGgtttttttgcgatattc
aattttttttgcctgcgatagCTTGAAGCacaacatctagcccttcgggc
tttacaaatctatggataaaagtataaaaaagttttagttttgGCGAACG
AGGAGCATAATGAATCAGGGCCATTTTAGAgggaaaagtatttttttttt
gattttctcgaACGCCAATTTAGAAAAATCATATAACTTTGATAAAAGGT
GTCAACCATGTCATAAATATACTATGTCTCTTCATAAAGGGTCCTCATTC
ATTAGAACACAAAATGTGTAGTCCTCCTCTTTCCAAAACATACAATCAAA
AGTATAAAGAGTATAGAAAATAACAGCAAAGTTTCCTTAACCAAAAACGa
caattttttgtacaaaaccTTCTTTTACAATCTTTTGTAGAAGGTGGAAA
AAGGAGGACTCCACAAGCATGCGGAGGAGACTGTCCTGCTGCGTGTGCAC
CTGCCTGTTTACCAGTATGCTGCGCACcccctccaccacctccacctcCT
CCCCCACCACCTCCTCCACCACCCCCACCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCACC
ACCTCCACCCCCACCAATCCCAGGAAACCCAGGACCCCCAGGACGTCCAG
GACAACCAGGAGGACCAGGACCAGCTGGACCACCAGGACCTCCAGGACCC
CCAGGGCCACCAGGACCACCAGGACCAGGTGGATTACCAGGAGCCCCAgc
cccaccaccaccaccatgCCCACAAGTTTGCGTTACCCAATGTGTACCCA
TCTGCCCACAATACTGTTGTCCAGCCAGAAGAAAGTAAAGCTGAAGAACG
CCACATTCAAATCGTTTTACTATTCATTGTACACAATATGTTTTACATTT
TCTTTAATAATATTTCGTGAATGAAATATAATTTATACATAGACATGTCT
TTAACATCTCAAATTCTTTACACAGTTATAGGTCACTAACATTTCTAATC
CATAttaattttacttaatttttcgACATGACTGACTGAATACAATTTAA
TGCTCCTCCTGAAACTTACTTAGTAAGAGAGTATTATAGATTTAAAGTTT
AGACTTATATTTTGGTAAAGTTAGATGCATGCATAAAACTTCTCAAAAAC
GAGAAATTTTAATAATTCCCCTTCTTATATTTCTAGATGTCTTTAAGAGA
AGTCCAACAGCCTGTGCTGCACCATGCCCAGCCGCATGCGCTCCAGTTTG
CGCACCAGTATGCTGTGCCCCACCtccacctccaccaccacccccaccac
caccaccatgCCCACCAATTTGCCCAGTGCAATGTGTCCCAACTTGCCCA
CAATACTGCTGCCCAGCCAGAAAATAGATGGGAAGAACAAGagattttat
ttttctacaAATCTACTAAACCAAGTGCAACTTCATAAAATATGAAATAG
ATTTTGTATCCAAAAAATACGTagtctcttttttttcttcttttgatgga
atttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001437XLOC_001437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002653-exon-sc0000021-1491911889:1033153..1033410TCONS_00002653-exon-sc0000021-1491911889:1033153..1033410Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1510915933:1033153..1033410TCONS_00002653-exon-sc0000021-1510915933:1033153..1033410Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1575043694:1033153..1033410TCONS_00002653-exon-sc0000021-1575043694:1033153..1033410Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1491911889:1035043..1035106TCONS_00002653-exon-sc0000021-1491911889:1035043..1035106Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1510915933:1035043..1035106TCONS_00002653-exon-sc0000021-1510915933:1035043..1035106Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1575043694:1035043..1035106TCONS_00002653-exon-sc0000021-1575043694:1035043..1035106Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1491911889:1038989..1039308TCONS_00002653-exon-sc0000021-1491911889:1038989..1039308Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1510915933:1038989..1039308TCONS_00002653-exon-sc0000021-1510915933:1038989..1039308Clytia hemisphaericaexon
TCONS_00002653-exon-sc0000021-1575043694:1038989..1039308TCONS_00002653-exon-sc0000021-1575043694:1038989..1039308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1033153..1039308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.61788	11.1744	179.907	222.547	79.6451	83.3128	158.614	130.696	291.559	310.924	204.413	523.189	392.684	347.33	0.743126	0.388814	296.205	341.335	254.544	244.053	339.424	378.8	55.4343	17.5654	0.578471	0.592899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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