TCONS_00002655 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002655
Unique Name	TCONS_00002655
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	439

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000021:1034740..1039308+

transcript sequence

>TCONS_00002655 ID=TCONS_00002655|Name=TCONS_00002655|organism=Clytia hemisphaerica|type=transcript|length=439bp
aaaaatcaacttcagCCTATCCAAAGTATAGGGTCTGAAAAAAAAGTCTG
CAGCGaTGAGATCTTGTATCGCTATCGTATTGCTCTTGGCAGCAATTGCC
AATGCCAAATCAGTTCATGATGTCTTTAAGAGAAGTCCAACAGCCTGTGC
TGCACCATGCCCAGCCGCATGCGCTCCAGTTTGCGCACCAGTATGCTGTG
CCCCACCtccacctccaccaccacccccaccaccaccaccatgCCCACCA
ATTTGCCCAGTGCAATGTGTCCCAACTTGCCCACAATACTGCTGCCCAGC
CAGAAAATAGATGGGAAGAACAAGagattttatttttctacaAATCTACT
AAACCAAGTGCAACTTCATAAAATATGAAATAGATTTTGTATCCAAAAAA
TACGTagtctcttttttttcttcttttgatggaatttta

Run BLAST on NCBI

transcript from alignment at sc0000021:1034740..1039308+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002655 ID=TCONS_00002655|Name=TCONS_00002655|organism=Clytia hemisphaerica|type=transcript|length=4569bp|location=Sequence derived from alignment at sc0000021:1034740..1039308+ (Clytia hemisphaerica)
aaaaatcaacttcagCCTATCCAAAGTATAGGGTCTGAAAAAAAAGTCTG
CAGCGGTAAGATAATAATTatatattcaaaataaaacttaataaaattaa
taaagtATTTTAAATTATCGTAATATAATAGCAATGAAAGATATATCAAT
AGTTAATACAATGCAAATTGAATCTTCGTATAGGATTATGGAATGTGATT
AGTTATTATAGATAAACTAATCAAAGTTTGGTCttgatgttttattttat
tttgaaattcggattttcttataataccattgaatgttttctttttcttc
tagaTGAGATCTTGTATCGCTATCGTATTGCTCTTGGCAGCAATTGCCAA
TGCCAAATCAGTTCATGGTAAGTTAATattcattattatttttcattctt
ctttttcattttctttagtttttaaTTATGAAGCAATCATTATTAGAAAG
TTTCGATTTTACAATACAAAATTCGAATTGAAACGAAACAAATATTATAG
agtgtaaattattttttgacaatATATTTGATGCCTTGAGTTTCTTCAGa
acaacttttgaatttttaaaactcGAAATCATATTTTCCTTTGTCTGAAA
TTAAGATATATTAAATTTTCTGATAATGactgtttcattttaaatttatt
cAACTCGTAGTCTTTTAATCCAAAAATATGTACATATCACGACAACATTT
CTCATTCCGTTTtcaatatataaaaaattataaaattactTTAAATAATA
GTGACTTCAGTACACATTTTTGAATTAAGTTAGCAGCATTTATCGGCTAA
TAATTTTGGAATGATGTACTCTGGAAGActttttggcttttaaaattttt
tggtttcTTGAAGCACGCTAGTAATGCAACTTGAAATTATCGCTACCATT
TTGATAAGAACGTAAACTTTTTTTGCAAGTTAAGAACTGAATTTAAAAGC
ACGATGAGTGGTTTATCCTATACTTTGATTAAAAATGTATCAAACTATTT
TATTGCCTAAAAGCTGCGAAAAATTATTTGCCGATAAAATGTTGCTTACT
CAGATAATATGCATTTATAGGCAAGTTATGCAGTTTGTTTACTTTAGCAT
AGGGAAGTTTTGTAATCCTTAATCCAAGTTTGCTCATATGTCACTAAGTA
TTATATTTTGCGCCAATATAATTTGAGAACTTAATCCTTAAAAGTTTTGC
AACTAAAGAAAAGGGAatactctctaattcgaacctctgtaATTCAATTC
TTTCTATGATTTgcgtaattcgaatttttctgtaattcaaaAAAGTAATG
TTTTGTCAATTAAAGATCGGGAtagagagagagtcaactgtatcaTACAG
TTTAAGTCGCTTTTGCCAAAGTATTTCTATTACCAAAGCGATTTTTGAGT
TTGTGAGCAAACTTGGTTAAAAGTTAAAATTACTTGTCTTTATCAAGCAA
TGAAAGTTACAAACCACATTCAAATTATCATCCTCaatccatttttttga
aaatcgatcCATATTCGAAATATGAGCATTGCTTGATAAAGAACCAGGTT
AAaagcatagatttataaagctcgaagggctagaggtaGACGTTGTGCCT
TGGCTGAAAGGTGCGCCGTGGCTAGGTAGGATATCCTACCTAGGTCATGT
GACATTACAATCAAATTTAAGCGCTTGATCAATTAGAAGCTTCAAGgttt
ttttgcgatattcaattttttttgcctgcgatagCTTGAAGCacaacatc
tagcccttcgggctttacaaatctatggataaaagtataaaaaagtttta
gttttgGCGAACGAGGAGCATAATGAATCAGGGCCATTTTAGAgggaaaa
gtattttttttttgattttctcgaACGCCAATTTAGAAAAATCATATAAC
TTTGATAAAAGGTGTCAACCATGTCATAAATATACTATGTCTCTTCATAA
AGGGTCCTCATTCATTAGAACACAAAATGTGTAGTCCTCCTCTTTCCAAA
ACATACAATCAAAAGTATAAAGAGTATAGAAAATAACAGCAAAGTTTCCT
TAACCAAAAACGacaattttttgtacaaaaccTTCTTTTACAATCTTTTG
TAGAAGGTGGAAAAAGGAGGACTCCACAAGCATGCGGAGGAGACTGTCCT
GCTGCGTGTGCACCTGCCTGTTTACCAGTATGCTGCGCACcccctccacc
acctccacctcCTCCCCCACCACCTCCTCCACCACCCCCACCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCACCACCACCTCCACCCCCACCAATCCCAGGAAACCCAGGACCC
CCAGGACGTCCAGGACAACCAGGAGGACCAGGACCAGCTGGACCACCAGG
ACCTCCAGGACCCCCAGGGCCACCAGGACCACCAGGACCAGGTGGATTAC
CAGGAGCCCCAgccccaccaccaccaccatgCCCACAAGTTTGCGTTACC
CAATGTGTACCCATCTGCCCACAATACTGTTGTCCAGCCAGAAGAAAGTA
AAGCTGAAGAACGCCACATTCAAATCGTTTTACTATTCATTGTACACAAT
ATGTTTTACATTTTCTTTAATAATATTTCGTGAATGAAATATAATTTATA
CATAGACATGTCTTTAACATCTCAAATTCTTTACACAGTTATAGGTCACT
AACATTTCTAATCCATAttaattttacttaatttttcgACATGACTGACT
GAATACAATTTAATGCTCCTCCTGAAACTTACTTAGTAAGAGAGTATTAT
AGATTTAAAGTTTAGACTTATATTTTGGTAAAGTTAGATGCATGCATAAA
ACTTCTCAAAAACGAGAAATTTTAATAATTCCCCTTCTTATATTTCTAGA
TGTCTTTAAGAGAAGTCCAACAGCCTGTGCTGCACCATGCCCAGCCGCAT
GCGCTCCAGTTTGCGCACCAGTATGCTGTGCCCCACCtccacctccacca
ccacccccaccaccaccaccatgCCCACCAATTTGCCCAGTGCAATGTGT
CCCAACTTGCCCACAATACTGCTGCCCAGCCAGAAAATAGATGGGAAGAA
CAAGagattttatttttctacaAATCTACTAAACCAAGTGCAACTTCATA
AAATATGAAATAGATTTTGTATCCAAAAAATACGTagtctcttttttttc
ttcttttgatggaatttta

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001437	XLOC_001437	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002655-exon-sc0000021-1491911889:1034740..1034794	TCONS_00002655-exon-sc0000021-1491911889:1034740..1034794	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1510915933:1034740..1034794	TCONS_00002655-exon-sc0000021-1510915933:1034740..1034794	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1575043694:1034740..1034794	TCONS_00002655-exon-sc0000021-1575043694:1034740..1034794	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1491911889:1035043..1035106	TCONS_00002655-exon-sc0000021-1491911889:1035043..1035106	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1510915933:1035043..1035106	TCONS_00002655-exon-sc0000021-1510915933:1035043..1035106	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1575043694:1035043..1035106	TCONS_00002655-exon-sc0000021-1575043694:1035043..1035106	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1491911889:1038989..1039308	TCONS_00002655-exon-sc0000021-1491911889:1038989..1039308	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1510915933:1038989..1039308	TCONS_00002655-exon-sc0000021-1510915933:1038989..1039308	Clytia hemisphaerica	exon
TCONS_00002655-exon-sc0000021-1575043694:1038989..1039308	TCONS_00002655-exon-sc0000021-1575043694:1038989..1039308	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000021	supercontig	sc0000021:1034740..1039308 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	11.2445	10.6878	404.525	488.798	111.151	84.888	288.811	166.516	439.698	420.982	317.715	738.681	525.907	472.051	2.0444	1.84179	502.631	591.194	528.152	452.498	519.804	503.42	70.9798	20.4287	1.13665	1.84916

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002655 vs. Swiss-Prot (Human)

BLAST of TCONS_00002655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002655 (transcript) - C. hemisphaerica