TCONS_00002727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002727
Unique NameTCONS_00002727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002727 ID=TCONS_00002727|Name=TCONS_00002727|organism=Clytia hemisphaerica|type=transcript|length=1363bp
TGATCATGGTGATGAAAAGAAGTcatcgaaacgtcaaaaaatTATCAACA
AACCAAAAGTGATGGTCACTTCTACGATGGCTCCAGTCAATACTTCACCA
ACAACAtccagtcttttgaataacacAAGCTTTACAACAACCAGTCGTAA
TGTCTTTGTACCATTCTCACCTACCTCCATCCTACCAACAGCTACCACAA
CCATCAGTAATTCAAATGATGTTTCATCAACCGCTCTATCTGATGTCTTC
AATAACCTCAATTTGACTCTTCTATCCATAATCTTCATTCTGGGCATCAT
TGGAAACGCTTTGGCAATCTACATCTTCAGTGACAATATTCGGAAACGTC
CTGGTAACAAGTTCAATTACATGTTAAGAGCGCTTGCTGTGGTGGATCTC
TTAACCACGGTTTTTACTCCAGGGTTGTATCTCTACTTGACCACAGTAAG
ATGGAAGAAATGGCATTTTGGAGAATCAGCCTGCAAAATTTTGCGTAGCT
TACCATCAATTTGTATTACGCTATCGCAATTTATATTAATGTTGATCGCT
TATCAGCGTTACCGCGTTGTCAGTAAACCCCTCGAACGACCAATCACGAA
ACGTTTGACGATCACGTGGTTCATTGTTTCCACTCTCATCTCGGTAGCGC
TCACCATTCCGTGGACTTTAACCTTGGATATTTTGCAGAACGAAACAGCA
GGTCTCAACACGTGTACCTCTACATCACAGAGCTCTTCCAAGGAAGGATT
CATTCTAAATTTTACTTTTGACGTCATCATGCTAACAAGAGACTTATGCT
CATGCGCGTATATCTTCATCTATGGACGCCTGACAATACGATCTTTgaac
aaaaacaaagatttcTATTCCAAACATAAACGCTTAATCgaaagaatgaa
aaatataaGAGGTTTACTGAACTCGATAATCACCGTTTATTTCATATGTG
TAGTTCCTATCGATGTATTCCACGTTATCTACTTCGTTATGAGATCTTTT
AACGTGTCTTTGGGACCTAATGAATATTCCTATCTGGTTGTAGTATTGAC
TTTCTTAAAGACTTGCCAAGCGGCGCAGAGTAGCATCAACCCAATCATAT
ACTCAAAAAGAATTCAATCTTTCCGAAGACTGTTTTGTCCGAACCGACAA
CGAGCTAAAGAGGCATTAGTTAAGACTTTGATACCGATCGGACTGTTGAA
AGATCCTCATATTCAAATTGATGATCGACTGAAGAATAAACGTTTTTCTA
TGTTTTAGTGTCTTCGAAATTCCTTAGATTGAAGTGATTAAAGAAATGTC
AATGTTGGTTGGACATTTGATGAGGCTAACCGTCCTGACAGCTCTGGTGA
CTTTTAGAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000021:700889..704247-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002727 ID=TCONS_00002727|Name=TCONS_00002727|organism=Clytia hemisphaerica|type=transcript|length=3359bp|location=Sequence derived from alignment at sc0000021:700889..704247- (Clytia hemisphaerica)
TGATCATGGTGATGAAAAGAAGTCATCGAAACGTCAAAAAATGTAAAAAT
TTATATTTCTCGCCTTTTTTTTATTTCTCGTCTCCACATTTTTATTTAAA
GTTATTTGGCCCAGTAAATTTGACAGGAGAGTTTGGGAATGATTGTACAG
TTGACTCTCGCTAATTCGAACTCGAAACGAAATTCTTATTTTATTCGAAT
TACAGAAATCAAATTATAGAAAGTATTTTACTAGGTTTTTCCTATGACGG
GAGCTGAGAATTAGTTCGAATTATAGAAAGATTCGAATAATAGAAGTTCG
TAAGGAAAAAAATATCAGCAGTATCCTGCTACTGGAAGTTTCATGTCTTC
AGGCAACTAATAGAAGTTCGAATTAGTGAAAGTCAAAACAGTTAGCCATA
AAAAATCATCGAAATTCCAAAATATTGGATGATTTCATTGATCGTGTCGT
AGAGTAGATGGCTTGGTGTTTTAAACCCTGTGGATTTACAAAATCTGTTT
GCAATGAAATTCCAACTCCTTGGTAGAGAATTTCACAGTTACAGTTAGAA
ACGTACGGTTTGAAAATGTGATAAAAATACACGTTCTTTTTATAAGAACA
TCCAAAATCTTTGAAGCCTTCGAATGCTCTTAACTTTTTTAGTTTTGAGC
CTATTATAACACGTTCTTATTTTCACCGTTTTCTAATCATTTTGTCCATT
TTCCTAATAAATCGGGTGTTTTGGAGTCCGCAAAGGTTGTTCTTAACTTG
TTCTTAATATTTTGGCCATCGAAACTCTAATTCTTATATAGTTTGTTCTT
ATGAAAAACGCCTTTAAAGTCTTTTGACTTAACAATTAAGTCCTGTCTTC
CAGATACTAACGGCTCTTTTAAAGTCCAATATATTATACCTTTACATACA
GTACGTAAAGACTTTAAAAGTATAATCAAATTTTGAGTATGTTAATGGTA
ATGCCAATATGTAGATTTTAGATAATAACTCTTGAAAGATTAGGATTAGA
GATACTCTCGGGTACCTATTAGCCGGGGGGGGGGGGGGGATAAGCGGGGG
TTTGGAATAAGAATGTCCTTGGTGGAAAATTTTCAAAAAATTAATTTGCG
GGAGGGAAGGCTATTAGGTACCCGAGAGTAGTTGGAAAGACAATTTCGTG
AAGGTATATTTTAAGCTAAAGATAGTAAGATCTTGATAAGATGTAAAAAA
AATCAATACCTTTTGTTTTCTAAACTTTTCAACTACATATTATAATGAAA
GGTTTTGTAGGACGTATGAAAGAATTTTCATAACCATACTCTTATGCATA
ACTTGCATTTTGGGTTGGACATGGGGGGGGGGCACTGACCTTGACGGCCG
ACGGGGACGTACCGTTCAAGTTTGAAAAGGGGACCCTGCCAGATAAGAAT
TTTCAGAAAATTGGGACCCTGTCCGAACAAAATAACAAAAATCGCTGAAA
GTAGACGAAAAATTGAAAAATCTTTCTAATTTCCACCCTGTTGTTTAAAA
TAACCAGAAGTCGACCCTGTCAGATTCACATCTTGAAAAGTAGTAAATTT
GGGACCCAGTCAAGTCAAATCTTCAGAGCCTGAAAAAGTAACCCTGATCA
GCGGCATGTCCCCGTACCCAATCTTGGCTAGGTGCCCTCCCCCGGGGGCC
ATGGACTGTATCAGTAGTTTTTGTGGATAATAAACTTGAATTTTATGAAG
TGTGAATATCTTTGGCATAGATAATGTACTTGTACAATATTCAAGGTGCT
ACATACGTAAAGTCAAGTGTGAACTTATCTCAAGTAATAAACATGGCTAA
AATGGTCTGCAGAGCTATAATTAAAAGCTTAATACTTTATGTACTGGTAA
GCCAGCAACGGTAACTTAGTTTTCGTTTAATCTGGAAGTATAAGGAGTTG
TCATAATTTTTAAATATGTTCAAAGACCAGTCAAGGTTTCCAACCCTGTA
CGCAATTTTATGTTTGCAGGTTCTCAATTTTGTCTGGAGTGCATAAGATC
CAGAATGTATTACTCTATCCACCTGATTTCATTTTTAGTATCAACAAACC
AAAAGTGATGGTCACTTCTACGATGGCTCCAGTCAATACTTCACCAACAA
CATCCAGTCTTTTGAATAACACAAGCTTTACAACAACCAGTCGTAATGTC
TTTGTACCATTCTCACCTACCTCCATCCTACCAACAGCTACCACAACCAT
CAGTAATTCAAATGATGTTTCATCAACCGCTCTATCTGATGTCTTCAATA
ACCTCAATTTGACTCTTCTATCCATAATCTTCATTCTGGGCATCATTGGA
AACGCTTTGGCAATCTACATCTTCAGTGACAATATTCGGAAACGTCCTGG
TAACAAGTTCAATTACATGTTAAGAGCGCTTGCTGTGGTGGATCTCTTAA
CCACGGTTTTTACTCCAGGGTTGTATCTCTACTTGACCACAGTAAGATGG
AAGAAATGGCATTTTGGAGAATCAGCCTGCAAAATTTTGCGTAGCTTACC
ATCAATTTGTATTACGCTATCGCAATTTATATTAATGTTGATCGCTTATC
AGCGTTACCGCGTTGTCAGTAAACCCCTCGAACGACCAATCACGAAACGT
TTGACGATCACGTGGTTCATTGTTTCCACTCTCATCTCGGTAGCGCTCAC
CATTCCGTGGACTTTAACCTTGGATATTTTGCAGAACGAAACAGCAGGTC
TCAACACGTGTACCTCTACATCACAGAGCTCTTCCAAGGAAGGATTCATT
CTAAATTTTACTTTTGACGTCATCATGCTAACAAGAGACTTATGCTCATG
CGCGTATATCTTCATCTATGGACGCCTGACAATACGATCTTTGAACAAAA
ACAAAGATTTCTATTCCAAACATAAACGCTTAATCGAAAGAATGAAAAAT
ATAAGAGGTTTACTGAACTCGATAATCACCGTTTATTTCATATGTGTAGT
TCCTATCGATGTATTCCACGTTATCTACTTCGTTATGAGATCTTTTAACG
TGTCTTTGGGACCTAATGAATATTCCTATCTGGTTGTAGTATTGACTTTC
TTAAAGACTTGCCAAGCGGCGCAGAGTAGCATCAACCCAATCATATACTC
AAAAAGAATTCAATCTTTCCGAAGACTGTTTTGTCCGAACCGACAACGAG
CTAAAGAGGCATTAGTTAAGACTTTGATACCGATCGGACTGTTGAAAGAT
CCTCATATTCAAATTGATGATCGACTGAAGAATAAACGTTTTTCTATGTT
TTAGTGTCTTCGAAATTCCTTAGATTGAAGTGATTAAAGAAATGTCAATG
TTGGTTGGACATTTGATGAGGCTAACCGTCCTGACAGCTCTGGTGACTTT
TAGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001464XLOC_001464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002727-exon-sc0000021-1575043694:704206..704247TCONS_00002727-exon-sc0000021-1575043694:704206..704247Clytia hemisphaericaexon
TCONS_00002727-exon-sc0000021-1575043694:700889..702209TCONS_00002727-exon-sc0000021-1575043694:700889..702209Clytia hemisphaericaexon
TCONS_00002727-exon-sc0000021-1510915933:704206..704247TCONS_00002727-exon-sc0000021-1510915933:704206..704247Clytia hemisphaericaexon
TCONS_00002727-exon-sc0000021-1510915933:700889..702209TCONS_00002727-exon-sc0000021-1510915933:700889..702209Clytia hemisphaericaexon
TCONS_00002727-exon-sc0000021-1491911889:704206..704247TCONS_00002727-exon-sc0000021-1491911889:704206..704247Clytia hemisphaericaexon
TCONS_00002727-exon-sc0000021-1491911889:700889..702209TCONS_00002727-exon-sc0000021-1491911889:700889..702209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:700889..704247 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202688	0	0	0	0	0.278246	0.243876	0.0194946	0	0	1.69027	0.75005	0.515185	0.772412	1.22089e-09	0.219444	2.17903e-05	0.0482686	0.037921	0.195607	0.320024	0.00979473	0.455085	0.992077	0	0	0.489126	0.004453	0	0.756331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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