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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002729 ID=TCONS_00002729|Name=TCONS_00002729|organism=Clytia hemisphaerica|type=transcript|length=3692bpRun BLAST on NCBI protein sequence of TCONS_00002729-protein >TCONS_00002729-protein ID=TCONS_00002729-protein|Name=TCONS_00002729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp MNKLPSSTVKLISSSQVIKSVWNVVKELVENSLDAGSDCIDVRLEQSGLQRun BLAST on NCBI transcript from alignment at sc0000021:700889..733110- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002729 ID=TCONS_00002729|Name=TCONS_00002729|organism=Clytia hemisphaerica|type=transcript|length=32222bp|location=Sequence derived from alignment at sc0000021:700889..733110- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:700889..733110- >TCONS_00002729 ID=TCONS_00002729|Name=TCONS_00002729|organism=Clytia hemisphaerica|type=CDS|length=36096bp|location=Sequence derived from alignment at sc0000021:700889..733110- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002729 vs. Swiss-Prot (Human)
Match: PMS1 (PMS1 protein homolog 1 OS=Homo sapiens GN=PMS1 PE=1 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 3.619e-76 Identity = 152/377 (40.32%), Postives = 224/377 (59.42%), Query Frame = 3
Query: 90 MNKLPSSTVKLISSSQVIKSVWNVVKELVENSLDAGSDCIDVRLEQSGLQKIEVNDNGPGIPKEQIEHLCKPYFTSKLSSFEDLETLQTCGFRGEALHSICTIARISVITKTALDDVATLFEFDSNGSVVESKPTHHGNGTTIIVKDLFKDLPVRKQNLKSTKAQKDEVKRIEDLLMGFSLAYCNLRITLTNDKKEIWRKNRTASPSFSIREIFKSRVANALEEILIEDSEFQIH--GFVPKKDCDVQVVSRSTGDRIFLSVNKRPVAISSLKKTLKENFVLS--NPGVNKYPFAVLEITLDPKLIDVNLEADKTRVDIINIEKITAALSNKLQLLYDTYKPMSSEVNIETEKPESQSSGPKLPSVDIFINESQDTE 1208
M +LP++TV+L+SSSQ+I SV +VVKEL+ENSLDAG+ +DV+LE G KIEV DNG GI + Y+TSK++S EDLE L T GFRGEAL SIC IA + + T+TA D+ +T + D +G ++ KP+H G GTT+ LFK+LPVRKQ + K KDE+K+I+DLLM F + +LRI ++K IW+K+R + ++ + + V N +E E QI+ GF+PK D D S ST +R F+ +N RPV + K ++ ++ L YP L+I + +DVNL DK++V + N E + AL N L+ Y P+ S + E K + + + DI ++++ +T+
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGIKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQYVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGILKPDLRIVFVHNKAVIWQKSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALEN---LMTTCYGPLPSTNSYENNKTD-------VSAADIVLSKTAETD 367 The following BLAST results are available for this feature:
BLAST of TCONS_00002729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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