|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002735 ID=TCONS_00002735|Name=TCONS_00002735|organism=Clytia hemisphaerica|type=transcript|length=1885bpRun BLAST on NCBI protein sequence of TCONS_00002735-protein >TCONS_00002735-protein ID=TCONS_00002735-protein|Name=TCONS_00002735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp MGEDIEMKDETPEKSQAEIEKLSYEDIKEQLRQVEKSVLNKEPRFISRVLRun BLAST on NCBI transcript from alignment at sc0000021:785272..799542- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002735 ID=TCONS_00002735|Name=TCONS_00002735|organism=Clytia hemisphaerica|type=transcript|length=14271bp|location=Sequence derived from alignment at sc0000021:785272..799542- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:785272..799542- >TCONS_00002735 ID=TCONS_00002735|Name=TCONS_00002735|organism=Clytia hemisphaerica|type=CDS|length=21555bp|location=Sequence derived from alignment at sc0000021:785272..799542- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002735 vs. Swiss-Prot (Human)
Match: PSMD3 (26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2) HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0 Identity = 302/501 (60.28%), Postives = 373/501 (74.45%), Query Frame = 2
Query: 161 DIEMKDETP------------------EKSQAEIEKLSYEDIKEQLRQVEKSVLNKEPRFISRVLRSLVSTRKKLNEKILTKLVSLYALS--ASKSTLLGFFDAKQGEEEKLP--PKKSGIQS---LPETDVYLHLLCCIYFIDKKNNEKALACSESLVDKVSAYNRRTLDSLAAVCYFYHSRIYEILGQLQDIRSFLHTRLRTATLRHDADGQVMLQXXXXXXXXXXXXXDQADKLVSKSTFPESASNNDWARYLYYIGLIKAIQLDYSEAHKNLMNAIRKAPQNVAIGFKQHVHRLAIVVQLLLGEIPDRKTFRETFLKKTLAPYYQLTQAVRTGNLNLFNQTVEQHKEKFLAEKTYTLIIRLRHNVIKTGIRMISLSYSRISLNDIAAKLCLDSADDAEFIVSKAIRDGVIDATIDHEMKCVQSKENVDVYTTNEPQNAFHQRISFCLDIYNQSVKAMRYPAKSYNKDLETLEEQREREKQDLEYAKEIAEDDDD-FP 1585
D+EMK+E E SQ E++ ++ EDIKE ++Q+EK+V KEPRF+ R LR L ST ++LN +L K V + S A++ LL F + E L P+ S LPE + YL LL I+ ++ K ++A S+ L+ K+S NRR LD +AA CY+YH+R+YE L +L +RSFLH RLRTATLRHDADGQ L NLLLRNY++Y+LYDQA+KLVSKS FPE A+NN+WARYLYY G IKAIQL+YSEA + + NA+RKAPQ+ A+GFKQ VH+L IVV+LLLGEIPDR FR+ LK++L PY+ LTQAVRTGNL FNQ ++Q EKF A+ TYTLIIRLRHNVIKTG+RMISLSYSRISL DIA KL LDS +DAEFIV+KAIRDGVI+A+I+HE VQSKE +D+Y+T EPQ AFHQRISFCLDI+N SVKAMR+P KSYNKDLE+ EE+RERE+QDLE+AKE+AEDDDD FP
Sbjct: 34 DVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534 The following BLAST results are available for this feature:
BLAST of TCONS_00002735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.