TCONS_00002745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002745
Unique NameTCONS_00002745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002745 ID=TCONS_00002745|Name=TCONS_00002745|organism=Clytia hemisphaerica|type=transcript|length=1559bp
CAAAAAtgcattttgttgatttcttggAAGACTTTCGTTTAGTTGCAATT
TTCACTGTAATATGCGCTGCGATTATCTGGCATAACTTGAAATTACTTGC
AAACGTGTTAGGTAACTCACACTATGGGAAAACAAAATATGTTTTAGTTA
CTGGCTGTGATTCAGGATTTGGTCTTGCAATTGCTTTGGATTTAGTGGAA
TCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCAAGAGGGTGTTGACAG
ATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTTTTTTGATGGATGTCA
CGAAAAATGAAGATGTCGAAAATGCGAGGAAATTCATTGAAGAAAAAACC
GAAAATGATGGACTGTACGCAGTTGTCAATAATGCTGGAATTGTTAAGCT
TGGAAGAATCAGTTGGCAAAGTATGGAAGATTTAGAAAAAGTTATGGATG
TCAATTTTTGGGGGACGGTTCGCACAACAAAAGCAATGCTTCCTTTGTTG
ACTAAAGCTAAAGGAAGAATCGTCAATATGTCAAGCTCCGCTGGTACCTT
GCCATTTTCATATGCAGGATGCTACACAATCTCCAAACATGCCATCGAAG
CCTTCTCTTACTGCTTAATGGAAGAGGTTGTCCATGATGGAATCTCTGTG
CACATAATTCGTCCAACTGGTCAAAAAACTAATATCATTAACCCTGAGAT
ACAACGCAAACAATGGGAGGACGATTTCAATAAACAAAGCCAGGAAGTCA
AACAAAGATATGgtccaaatttgaccaaatATTTGAACAATTTGGTAAAG
AAAATTAATCTAGTACCTGAAGGAACTGCTCAAGTCGTATCAAAAGTCAA
TCACGCTATCATGTCATCTAACCCTCACATAACATACACAGTTGGACCTT
ATTCGTGGATTTACAAGATTCTAGCATGTCTGCCAGTTTCATATTATCAA
TCGTTTGCACATTCCATTTTCCCACAGCTCGAACCAATAGTAGATCGATT
TGGACGAAGATAAGTTAATTACATATTAAGGAATTTTCTCGTACATTATT
AGCAGTTTTTAATGGTGTTATTCATATCGCTCCACgcatttttttaaaac
atctGGTTAAATCACATCAAGaaagttgaaatttcaaatttgaaatgtgT
TGACTCAACAAAAACCATTGATTTTAAAACCTATACTACTATGTAGTAGG
TTGTTTTAGTAGAAGAAAGCGGGCGGGTATTCGGTTTATTTTGGAGGCAA
Aaggcttaagggctctgaccatagtgaatttttcataattgccgtgttta
aaatgtgttttctgactgatgtaaccaacaaaactatggcatgttataca
ttttctgttagacaaactattcctgaatctgaaaattcaaaaattgcatt
gacaaaatttgatgaagaagaaaatgaagacttttgtgaggaagagtatt
tcaactttgaagagcttagtttcggcgaagaaaaaacattttgaaaaatt
ttttgcagtagatggtgtatcttttaccgaacaataaaaatttttgcgga
aaatttttg
Run BLAST on NCBI

transcript from alignment at sc0000021:1064730..1067634-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002745 ID=TCONS_00002745|Name=TCONS_00002745|organism=Clytia hemisphaerica|type=transcript|length=2905bp|location=Sequence derived from alignment at sc0000021:1064730..1067634- (Clytia hemisphaerica)
CAAAAATGCATTTTGTTGATTTCTTGGAAGACTTTCGTTTAGTTGCAATT
TTCACTGTAATATGCGCTGCGATTATCTGGCATAACTTGAAATTACTTGC
AAACGTGTTAGGTAACTCACACTATGGGAAAACAAAATATGTTTTAGTTA
CTGGCTGTGATTCAGGATTTGGTCTTGCAATTGCTTTGGATTTAGTGGAA
TCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCAAGAGGGTGTTGACAG
ATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTTTTTTGATGGATGTCA
CGAAAAATGAAGATGTCGAAAATGCGAGGAAATTCATTGAAGAAAAAACC
GAAAATGATGGTAAAATGTTTATTATTTTACAACCATTAAGGACAACCTA
ATATCACTAAGCTAAGAAACCTTCAATTTATAAGTTAAATGGCCTACTCT
TAGGTGCCAAATAAACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGCA
TTCAAGTAAACAAGCATTTGTTTTATTTCTAGGACTGTACGCAGTTGTCA
ATAATGCTGGAATTGTTAAGCTTGGAAGAATCAGTTGGCAAAGTATGGAA
GATTTAGAAAAAGTTATGGATGTCAATTTTTGGGGGACGGTTCGCACAAC
AAAAGCAATGCTTCCTTTGTTGACTAAAGCTAAAGGAAGAATCGTCAATA
TGTCAAGCTCCGCTGGTATGGACTATTGTTTAACTTCAAATGAACGTCTG
GTGATTTTTCTAAGCACTTTCAGATGGGGCCGTCTTTGTAAACTTAGATC
GAGCTTCTAATATGCCTGAAAGGGAATTGTCTCAGCAAAGCTGTATATTG
ATGAAGCTGGCATGGGGGTTTGGTTTGTGTTCAGAAGGCGAAGCTCCCAA
AAATATTTGGAATATTATAGAAATTTTTGTTTGTAAACAACAAACAGGTT
TAATGTTGATTAGAGGGTAATTATACCACATTAATATTCAGAAATGTTAG
CGTAATCTACTATTTGTGGGGTCTTCATTCCACATCTTTTTTACTGAGAG
GGATCCCTTTGTTCCTTCCTTAAGAGATTTTAGCTTTATTGACAAACGGA
GCCCCTCCCTTCTCCCCGATGGGCAAAGAATTTTTGCACCGTTTTCAGAT
TTTATCAAAACGATGCTCTCCANTCTGTTGACAATCGGAGCCTCTCCCTT
CTCCCCGCGGCTCAAAGAATATCTGCACCGTTTCCAGATTTTGCCAAAGC
GATGCTCTCTCTTTTGTTCTAGGTACCTTGCCATTTTCATATGCAGGATG
CTACACAATCTCCAAACATGCCATCGAAGCCTTCTCTTACTGCTTAATGG
AAGAGGTTGTCCATGATGGAATCTCTGTGCACATAATTCGTCCAACTGGT
CAAAAAACTAATATCATTAACCCTGAGATACAACGCAAACAATGGGAGGA
CGATTTCAATAAACAAAGCCAGGAAGTCAAACAAAGATATGGTCCAAATT
TGACCAAATGTAATTTGCTTTTTTTGTATTATGCATCATTTGGGACGGCT
TTTATTTTTACCAAAGTGTAAAAGGTTTTAAGCATTCGAAAAAAATCGCA
TTCCACTATTTTGAATCTTTGAAAGCATTTTCTTGAATTTTTCGAGTTTA
AAATTAAATCCCTATCGACGTTCCGAACTTACGAACACCGGACACGTCAA
CTCCTGTGTCGGATGCAGATACTTTTTAACACCAGACAATCACAACTCGA
GTCCGGTGCGTCTGGTGTGAATTATTTTTGAAACATACGTGTCAGGTGTC
AAGAAGTTCGAAAAATTAACACCGGACAAAAGGTTTCCGATGTGGCTGAG
GGACTGTCCGGTGCGTCAACAGGGTCGTCCTGAATGATGCTCAGCAACTC
CTCGTCCGTCTATTATTTCTTCATAGATTTGAACAATTTGGTAAAGAAAA
TTAATCTAGTACCTGAAGGAACTGCTCAAGTCGTATCAAAAGTCAATCAC
GCTATCATGTCATCTAACCCTCACATAACATACACAGTTGGACCTTATTC
GTGGATTTACAAGATTCTAGCATGTCTGCCAGTTTCATATTATCAATCGT
TTGCACATTCCATTTTCCCACAGCTCGAACCAATAGTAGATCGATTTGGA
CGAAGATAAGTTAATTACATATTAAGGAATTTTCTCGTACATTATTAGCA
GTTTTTAATGGTGTTATTCATATCGCTCCACGCATTTTTTTAAAACATCT
GGTTAAATCACATCAAGAAAGTTGAAATTTCAAATTTGAAATGTGTTGAC
TCAACAAAAACCATTGATTTTAAAACCTATACTACTATGTAGTAGGTTGT
TTTAGTAGAAGAAAGCGGGCGGGTATTCGGTTTATTTTGGAGGCAAAAGG
CTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTAAAAT
GTGTTTTCTGACTGATGTAACCAACAAAACTATGGCATGTTATACATTTT
CTGTTAGACAAACTATTCCTGAATCTGAAAATTCAAAAATTGCATTGACA
AAATTTGATGAAGAAGAAAATGAAGACTTTTGTGAGGAAGAGTATTTCAA
CTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAAATTTTTT
GCAGTAGATGGTGTATCTTTTACCGAACAATAAAAATTTTTGCGGAAAAT
TTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001476XLOC_001476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002745-exon-sc0000021-1575043694:1067275..1067634TCONS_00002745-exon-sc0000021-1575043694:1067275..1067634Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1575043694:1066720..1066902TCONS_00002745-exon-sc0000021-1575043694:1066720..1066902Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1575043694:1065926..1066162TCONS_00002745-exon-sc0000021-1575043694:1065926..1066162Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1575043694:1064730..1065508TCONS_00002745-exon-sc0000021-1575043694:1064730..1065508Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1510915933:1067275..1067634TCONS_00002745-exon-sc0000021-1510915933:1067275..1067634Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1510915933:1066720..1066902TCONS_00002745-exon-sc0000021-1510915933:1066720..1066902Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1510915933:1065926..1066162TCONS_00002745-exon-sc0000021-1510915933:1065926..1066162Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1510915933:1064730..1065508TCONS_00002745-exon-sc0000021-1510915933:1064730..1065508Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1491911889:1067275..1067634TCONS_00002745-exon-sc0000021-1491911889:1067275..1067634Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1491911889:1066720..1066902TCONS_00002745-exon-sc0000021-1491911889:1066720..1066902Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1491911889:1065926..1066162TCONS_00002745-exon-sc0000021-1491911889:1065926..1066162Clytia hemisphaericaexon
TCONS_00002745-exon-sc0000021-1491911889:1064730..1065508TCONS_00002745-exon-sc0000021-1491911889:1064730..1065508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1064730..1067634 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.66287	1.73758	1.29193	1.04112	0	0.327974	11.2238	8.65001	11.3144	15.0077	10.241	10.2582	12.1538	9.75114	18.6337	23.1347	6.94024	10.5096	2.62681	4.50385	17.0959	14.9868	10.792	12.4536	11.7238	13.1055	85.3485	70.299	1.4833	1.24755
Blast
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BLAST of TCONS_00002745 vs. Swiss-Prot (Human)
Match: DR9C7 (Short-chain dehydrogenase/reductase family 9C member 7 OS=Homo sapiens GN=SDR9C7 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.601e-49
Identity = 106/299 (35.45%), Postives = 163/299 (54.52%), Query Frame = 3 
Query:  102 NVLGNSHYGKTKYVLVTGCDSGFGLAIALDLVESKCKVFAGCLTQEGVDRLEKNKDFDGFAFLMDVTKNEDVENARKFIEEKTENDGLYAVVNNAGI-VKLGRISWQSMEDLEKVMDVNFWGTVRTTKAMLPLLTKAKGRIVNMSSSAGTLPFSYAGCYTISKHAIEAFSYCLMEEVVHDGISVHIIRPTGQKTNIINPE----IQRKQWEDDFNKQSQEVKQRYGPNLTKYLNNLVKKINLVPEGTAQ-VVSKVNHAIMSSNPHITYTVG-PYSWIYKILACLPVSYYQSFAHSIFPQ 977
            N++GN      KYV +TGCDSGFG  +A  LV+   +V A C T+EG  +L+++  +     L+DVTK+E ++ A +++ +K    GL+A+VNNAG+ +  G   W + +D  KV++VN  G +  T  MLP++ +A+GR+VNMSSS G +     G Y +SK  +EAFS  +  E+ + G+ V II P   +T I+  E      RK WE    +  QE +  YG +  +   + +K I  V E   + V++ + HAI+S +P I Y  G     +Y  LA LP            P+
Sbjct:   18 NLVGNLS---EKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAV-IGGGYCVSKFGVEAFSDSIRRELYYFGVKVCIIEPGNYRTAILGKENLESRMRKLWE----RLPQETRDSYGEDYFRIYTDKLKNIMQVAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPR 308
The following BLAST results are available for this feature:
BLAST of TCONS_00002745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DR9C74.601e-4935.45Short-chain dehydrogenase/reductase family 9C memb... [more]
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