TCONS_00002751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002751
Unique NameTCONS_00002751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002751 ID=TCONS_00002751|Name=TCONS_00002751|organism=Clytia hemisphaerica|type=transcript|length=870bp
cagagatttttctaaaaattcttcatcattgagtaaaaaatcaggaaaaa
taaTGAGAATATCCAAAAAACCTCATATTTAGGCAGATTTCGGCCCAAAT
TTAAACCAGgtttcaaattataaatttgACGCCATAGGTGAAATTTTTTT
AGATGTTTGCAAGGCAGTTTTAGAATTTCACAATATAATTTGTAAGTTCT
AGAGCATGATGAAATATACCTTGATATAAAAACAATTTGGtagaataaaa
tttaaaatataaaatgctTAGAAAAACTAAGTGCTTACTGAGAAAGTGAT
AAACGAAAGGCGAAGCTTATAATAGAGataattaattttgtttttttgtt
tactaGAAACAGACTGGACATTTAAATAAATATGATGAAAATATAGAGTG
CGGTACCAAGTTGGCGTGAGTTTATAAAGAATGGTAACTTTCCCTAGAAA
AATGAATCTGTTCTTTTCTTGTCAGACTCCTGGATTCTTTTGACAGGGGA
TATATATCTAGAGTCTGCTGGAATAGCAAATGCAAATTTTATCTGATTTA
TTGCTCCTGAATTTTCAGATATTTCATACTCCTTCCTagatttttgaagt
gcttggaAAATAGCTGGCTCCTTGATGCTACTTCAAAATTCGCTCTcttg
gaagaaaaaaaacagatattttgaaaaagtcacTGGCTGCTCATGTACAG
GGTTGAAATAGAGGTCATgtcattttttgcaattttgtctttttttgcaA
GTTTTTTTTCAGTGCCAGTTCATTTTGATGTCAATTTGAATTGGTGTAGA
ATTGCTTACACTTCAATAACTTCTAATGCTATTTTTAGGTATCACGTCAA
TTGGGTAAAAGTGCAATTCT
Run BLAST on NCBI

transcript from alignment at sc0000021:22131..23000

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002751 ID=TCONS_00002751|Name=TCONS_00002751|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at sc0000021:22131..23000 (Clytia hemisphaerica)
AGAATTGCACTTTTACCCAATTGACGTGATACCTAAAAATAGCATTAGAA
GTTATTGAAGTGTAAGCAATTCTACACCAATTCAAATTGACATCAAAATG
AACTGGCACTGAAAAAAAACTtgcaaaaaaagacaaaattgcaaaaaatg
acATGACCTCTATTTCAACCCTGTACATGAGCAGCCAgtgactttttcaa
aatatctgttttttttcttccaagAGAGCGAATTTTGAAGTAGCATCAAG
GAGCCAGCTATTTtccaagcacttcaaaaatctAGGAAGGAGTATGAAAT
ATCTGAAAATTCAGGAGCAATAAATCAGATAAAATTTGCATTTGCTATTC
CAGCAGACTCTAGATATATATCCCCTGTCAAAAGAATCCAGGAGTCTGAC
AAGAAAAGAACAGATTCATTTTTCTAGGGAAAGTTACCATTCTTTATAAA
CTCACGCCAACTTGGTACCGCACTCTATATTTTCATCATATTTATTTAAA
TGTCCAGTCTGTTTCtagtaaacaaaaaaacaaaattaattatCTCTATT
ATAAGCTTCGCCTTTCGTTTATCACTTTCTCAGTAAGCACTTAGTTTTTC
TAagcattttatattttaaattttattctaCCAAATTGTTTTTATATCAA
GGTATATTTCATCATGCTCTAGAACTTACAAATTATATTGTGAAATTCTA
AAACTGCCTTGCAAACATCTAAAAAAATTTCACCTATGGCGTcaaattta
taatttgaaacCTGGTTTAAATTTGGGCCGAAATCTGCCTAAATATGAGG
TTTTTTGGATATTCTCAttatttttcctgattttttactcaatgatgaag
aatttttagaaaaatctctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001479XLOC_001479Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002751-exon-sc0000021-1491911889:22131..23000TCONS_00002751-exon-sc0000021-1491911889:22131..23000Clytia hemisphaericaexon
TCONS_00002751-exon-sc0000021-1510915933:22131..23000TCONS_00002751-exon-sc0000021-1510915933:22131..23000Clytia hemisphaericaexon
TCONS_00002751-exon-sc0000021-1575043694:22131..23000TCONS_00002751-exon-sc0000021-1575043694:22131..23000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:22131..23000 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.75142	1.46551	0.364627	0.23782	0.289523	0.0571963	0.0690049	0.0646015	0.180916	0.112047	0	0.178729	0.0356961	0.0370708	0.0304772	0.0327067	0	0.041298	0.228222	0.119409	0.207576	0.151872	0	0.391643	0	0.15429	0.220788	0.314175	0.297863	0.546256
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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