TCONS_00002763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002763
Unique NameTCONS_00002763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002763 ID=TCONS_00002763|Name=TCONS_00002763|organism=Clytia hemisphaerica|type=transcript|length=739bp
GTCAATTCACAAGATGTCACCAAAACTTCGATAGATACAGAACAAAGGAA
GACCTCAGTCAATAATATGACATCAGAAAGTATTGTTAGTGTAGCTGATC
TTAGTACAGTAGAAGAAGCAGAGCTTGAAAATAAAAGACGTTGCGCAAGC
GTTGATAACAGCCAACTGACGCCGTCAAGGAGTAGACGATTCAAagtcaa
ccaaaattcaaattataaTAATAACCACACTActaagaaaacgaaagtga
aaccagAATTGCAAAGAGCTCATTCAATGAGTGACTTACTAGACATCAAC
AAAAAGcgtgaaaagaaatttaataaacgGAAAGGTTTTTCATCGAAATT
GTATAGGAGTGGTAGCATCTCGAATATATTAGATGATTTCTTTGAGGAGA
AAGCGAAGAGAATGTCACATGATCACTGGACTACAGTTATCAGTACGCCA
GATAAATGGTTTTATTGTTGGCACCCCTTGCTTGGTGTCAACAACTTGCT
TAGTAATTGGCAATGAGCTTTCTAtgaatactttaggcgtacaatctttc
gcgagcagaaactttcgcgaggacgaaaaatcgcgaaattgacgacattt
actttcgcgaatttgacgaaaaaatctttttcgcgagcataaactttcgc
aaatcaagatgtaaaattgagaattttcacatgaaaaaaatggcttagag
ggacataTACTTCTTGGATTGACTTGAAAcctttgtcct
Run BLAST on NCBI

protein sequence of TCONS_00002763-protein

>TCONS_00002763-protein ID=TCONS_00002763-protein|Name=TCONS_00002763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
VNSQDVTKTSIDTEQRKTSVNNMTSESIVSVADLSTVEEAELENKRRCAS
VDNSQLTPSRSRRFKVNQNSNYNNNHTTKKTKVKPELQRAHSMSDLLDIN
KKREKKFNKRKGFSSKLYRSGSISNILDDFFEEKAKRMSHDHWTTVISTP
DKWFYCWHPLLGVNNLLSNWQ
Run BLAST on NCBI

transcript from alignment at sc0000021:457099..457837

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002763 ID=TCONS_00002763|Name=TCONS_00002763|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at sc0000021:457099..457837 (Clytia hemisphaerica)
aggacaaaggTTTCAAGTCAATCCAAGAAGTAtatgtccctctaagccat
ttttttcatgtgaaaattctcaattttacatcttgatttgcgaaagttta
tgctcgcgaaaaagattttttcgtcaaattcgcgaaagtaaatgtcgtca
atttcgcgatttttcgtcctcgcgaaagtttctgctcgcgaaagattgta
cgcctaaagtattcaTAGAAAGCTCATTGCCAATTACTAAGCAAGTTGTT
GACACCAAGCAAGGGGTGCCAACAATAAAACCATTTATCTGGCGTACTGA
TAACTGTAGTCCAGTGATCATGTGACATTCTCTTCGCTTTCTCCTCAAAG
AAATCATCTAATATATTCGAGATGCTACCACTCCTATACAATTTCGATGA
AAAACCTTTCcgtttattaaatttcttttcacgCTTTTTGTTGATGTCTA
GTAAGTCACTCATTGAATGAGCTCTTTGCAATTctggtttcactttcgtt
ttcttagTAGTGTGGTTATTAttataatttgaattttggttgactTTGAA
TCGTCTACTCCTTGACGGCGTCAGTTGGCTGTTATCAACGCTTGCGCAAC
GTCTTTTATTTTCAAGCTCTGCTTCTTCTACTGTACTAAGATCAGCTACA
CTAACAATACTTTCTGATGTCATATTATTGACTGAGGTCTTCCTTTGTTC
TGTATCTATCGAAGTTTTGGTGACATCTTGTGAATTGAC

Coding sequence (CDS) from alignment at sc0000021:457099..457837

>TCONS_00002763 ID=TCONS_00002763|Name=TCONS_00002763|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0000021:457099..457837 (Clytia hemisphaerica)
TCATTGCCAATTACTAAGCAAGTTGTTGACACCAAGCAAGGGGTGCCAAC
AATAAAACCATTTATCTGGCGTACTGATAACTGTAGTCCAGTGATCATGT
GACATTCTCTTCGCTTTCTCCTCAAAGAAATCATCTAATATATTCGAGAT
GCTACCACTCCTATACAATTTCGATGAAAAACCTTTCcgtttattaaatt
tcttttcacgCTTTTTGTTGATGTCTAGTAAGTCACTCATTGAATGAGCT
CTTTGCAATTctggtttcactttcgttttcttagTAGTGTGGTTATTAtt
ataatttgaattttggttgactTTGAATCGTCTACTCCTTGACGGCGTCA
GTTGGCTGTTATCAACGCTTGCGCAACGTCTTTTATTTTCAAGCTCTGCT
TCTTCTACTGTACTAAGATCAGCTACACTAACAATACTTTCTGATGTCAT
ATTATTGACTGAGGTCTTCCTTTGTTCTGTATCTATCGAAGTTTTGGTGA
CATCTTGTGAATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001491XLOC_001491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002763-exon-sc0000021-1491911889:457099..457837TCONS_00002763-exon-sc0000021-1491911889:457099..457837Clytia hemisphaericaexon
TCONS_00002763-exon-sc0000021-1510915933:457099..457837TCONS_00002763-exon-sc0000021-1510915933:457099..457837Clytia hemisphaericaexon
TCONS_00002763-exon-sc0000021-1575043694:457099..457837TCONS_00002763-exon-sc0000021-1575043694:457099..457837Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002763-proteinTCONS_00002763-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:457099..457837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334696	0.195933	0.22743	0.593649	0.180542	0.428001	0.344243	0.161273	0.282141	0.559246	0.610751	0.0895525	3.29829	2.72818	0.418703	0.73481	1.00519	1.33982	3.349	3.50865	1.23164	0.948221	0.690909	1.32798	1.653	1.86011	2.0241	1.96162	0.074341	0.0757602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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