TCONS_00002772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002772
Unique NameTCONS_00002772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002772 ID=TCONS_00002772|Name=TCONS_00002772|organism=Clytia hemisphaerica|type=transcript|length=670bp
CTTGAAGAGGGGTAGAAAgggtacacgctttttataagaacatccaaaag
ttttgaagccttgggatgttcttaacttttttacttttaagcctaaaaat
gcccttaacatgctcttattttcgccatttttgagaatttttgtccattt
tcctatgaaattcggtgttctaaagtctgcaaagccttaaaatgttctta
acttgttcttaatattttggccatcgaagccttatgttcttatatagttt
gttctaaaaaacgtgtaaagctCAACCTTGTTTTCCGTTAAAAAGTCAAT
TAAAGTAATTTTCTCATCCTAATGACGagtaagaaaatttttgggaAGAA
ATAATTCATAATCCAATTTTAATTGTAAGAACAGAAGTATTCGCGAAACA
AAACTTTATTGTGCAATATAAAATGACTCTAGTCTATATGATATAATTAA
GTACCCAATTCCAGAAATTAGGCTGCTGTTTGAGCTTTGCCGAAAAATGA
CAATATTAAGCCGCCACATAGAAAGCCAATGAGACTACAGATTATTACCA
TTTCGAAATaattcaaactttttctggaAACATATGCCGTAATTAGATCT
GCCGCACCGCTCACTGATAATGACCCTTAATATTCAAATAATGGTTTTTG
AATTCGATTTACTTTTAAAT
Run BLAST on NCBI

transcript from alignment at sc0000021:585552..586221

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002772 ID=TCONS_00002772|Name=TCONS_00002772|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at sc0000021:585552..586221 (Clytia hemisphaerica)
ATTTAAAAGTAAATCGAATTCAAAAACCATTATTTGAATATTAAGGGTCA
TTATCAGTGAGCGGTGCGGCAGATCTAATTACGGCATATGTTtccagaaa
aagtttgaattATTTCGAAATGGTAATAATCTGTAGTCTCATTGGCTTTC
TATGTGGCGGCTTAATATTGTCATTTTTCGGCAAAGCTCAAACAGCAGCC
TAATTTCTGGAATTGGGTACTTAATTATATCATATAGACTAGAGTCATTT
TATATTGCACAATAAAGTTTTGTTTCGCGAATACTTCTGTTCTTACAATT
AAAATTGGATTATGAATTATTTCTtcccaaaaattttcttactCGTCATT
AGGATGAGAAAATTACTTTAATTGACTTTTTAACGGAAAACAAGGTTGag
ctttacacgttttttagaacaaactatataagaacataaggcttcgatgg
ccaaaatattaagaacaagttaagaacattttaaggctttgcagacttta
gaacaccgaatttcataggaaaatggacaaaaattctcaaaaatggcgaa
aataagagcatgttaagggcatttttaggcttaaaagtaaaaaagttaag
aacatcccaaggcttcaaaacttttggatgttcttataaaaagcgtgtac
ccTTTCTACCCCTCTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001500XLOC_001500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002772-exon-sc0000021-1491911889:585552..586221TCONS_00002772-exon-sc0000021-1491911889:585552..586221Clytia hemisphaericaexon
TCONS_00002772-exon-sc0000021-1510915933:585552..586221TCONS_00002772-exon-sc0000021-1510915933:585552..586221Clytia hemisphaericaexon
TCONS_00002772-exon-sc0000021-1575043694:585552..586221TCONS_00002772-exon-sc0000021-1575043694:585552..586221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:585552..586221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08626	0.245523	0.325475	1.40108	0.600219	0.113351	2.72239	4.70371	1.76578	2.83502	0.468827	1.51739	0.0857321	0.419466	0.305274	0.185824	0.396138	0.0617279	0.304281	0.472331	0.448082	0.816415	0.424855	0.189786	0	0	0.975326	1.16824	0.807087	0.486754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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