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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002778 ID=TCONS_00002778|Name=TCONS_00002778|organism=Clytia hemisphaerica|type=transcript|length=1992bp
GTTGGTTGGACATTTGATGAGGTTAACCGTCCTGACAGCTCTGGTGACTT
TTGAAAAACGGTTTTCTATGTTTTAGTGTCTTCGAAATTCCTTAGATTGA
AGGCTGTAAAGAAATGTCAATGTTGGTTGGACATTTGATGAGGTTAACCG
TCCTGACAGCTCTGGTGACTTTTGAAAAACGGTTTTCTATGTTTTAGTGT
CTTCGAAATTCCTTAGATTGAAGGCTGTAAAGAAATGTCAATGTTGGTTG
GACATTTGATGAGGTTAACCGTCCTGACAGCTCTGGTGACTTTTGAAAAA
CGGTTTTCTATGTTTTAGTGTCTTCGAAATTCCTTAGATTGAAGGCTGTA
AAGAAATGTCAATGTTGGTTGGACATTTGATGAGGTTAACCGTCCTGACA
GCTCTGGTGACTTTTGAAAAACGGTTTTCTATGTTTTAGTGTCTTCGAAA
TTCCTTAGATTGAAGGCTGTAAAGAAATGTCAATGTTGGTTGGACATTTG
ATGAGGTTAACCGTCCTGACAGCTCTGGTGACTTTTGAAAAACGGTTTTC
TATGTTTTAGTGTCTTCGAAATTCCTTAGATTGAAGGCTGTAAAGAAATG
TCAATGTTGGTTGGACATTTGATGAGGTTAACCGTCCTGACAGCTCTGGT
GACTTTTGAAAAACGGTTTTCTATGTTTTAGTGTCTTCGAAATTCCTTAG
ATTGAAGGCTGTAAAGAAATGTCAATGTTGGTTGGACATTTGATGAGGTT
AACCGTCCTGACAGCTCTGGTGACTTTTGAAAAACGGTTTTCTATGTTTT
AGTGTCTTCGAAATTCCTTAGATTGAAGGCTGTAAAGAAATGTCAATGTT
GGTTGGACATTTGATGAGGTTAACCGTCCTGACAGCTCTGGTGACTTTTG
AAAAACGGTTTTCTATGTTTTAGTGTCTTCGAAATTCCTTAGATTGAAGG
CTGTAAAGAAATGTCAATGTTGGTTGGACATTTGATGAGGTTAACCGTCC
TGACAGCTCTGGTGACTTTTGAAAAACGGTTTTCTATGTTTTAGTGTCTT
CGAAATTCCTTAGATTGAAGGCTGTAAAGAAATGTCAATGTTGGTTGGAC
ATTTGATGAGGTTAACCGTCCTGACAGCTCTGGTGACTTTTGAAAAACGG
TTTTCTATGTTTTAGTGTCTTCGAAATTCCTTAGATTGAAGGCTGTAAAG
AAATGTCAATGTTGGTTGGACATTTGATGAGGTTAACCGTCCTGACAGCT
CTGGTGACTTTTGAAAAACGGTTTTCTATGTTTTAGTGTCTTCGAAATTC
CTTAGATTGAAGGCTGTAAAGAAATGTCAATGTTGGTTGGACATTTGATG
AGGTTAACCGTCCTGACAGCTCTGGTGACTTTTGAAAAACGGTTTTCTAT
GTTTTAGTGTCTTCGAAATTCCTTAGATTGAAGGCTGTAAAGAAATGTCA
ATGTTGGTTGGACATTTGATGAGGTTAACCGTCCTGACAGCTCTGGTGAC
TTTTGAAAAACGGTTTTCTATGTTTTAGTGTCTTCGAAATTCCTTAGATT
GAAGGCTGTAAAGAAATGTCAATGTTGGTTGGACATTTGATGAGGTTAAC
CGTCCTGACAGCTCtggtgacttttgaaaaaacggttttctatGTTTTAG
TGTCTTCGAAATTCCTTAGATTGAAGTCATTAAAGAAATGTCAATCTTGG
TTGGATATTTGACAGCTCTggtgacttttgaaaatcttaatttATCTACT
CTTCTGAATTGAACCAAAGAAATGGAACCATGTATGCAACAAACATTTGT
GAGACTTTTAGTGGCTTTAGGTTGGTATTATTTTCTGTAAATACTGAATA
TGTTTTgtaaaaaacctgaaaaaaatgaaaaaattctttaaaattatatG
CCAAAAATGTTCGAAatttcatcttcaaatttaaattaatgaaaatattt
aataacGGTAGGATAGACAAgaaatcgaaaataattttcGTT Run BLAST on NCBI transcript from alignment at sc0000021:697262..699253 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002778 ID=TCONS_00002778|Name=TCONS_00002778|organism=Clytia hemisphaerica|type=transcript|length=1992bp|location=Sequence derived from alignment at sc0000021:697262..699253 (Clytia hemisphaerica)
AACgaaaattattttcgatttcTTGTCTATCCTACCgttattaaatattt
tcattaatttaaatttgaagatgaaatTTCGAACATTTTTGGCatataat
tttaaagaattttttcatttttttcaggttttttacAAAACATATTCAGT
ATTTACAGAAAATAATACCAACCTAAAGCCACTAAAAGTCTCACAAATGT
TTGTTGCATACATGGTTCCATTTCTTTGGTTCAATTCAGAAGAGTAGATa
aattaagattttcaaaagtcaccAGAGCTGTCAAATATCCAACCAAGATT
GACATTTCTTTAATGACTTCAATCTAAGGAATTTCGAAGACACTAAAACa
tagaaaaccgttttttcaaaagtcaccaGAGCTGTCAGGACGGTTAACCT
CATCAAATGTCCAACCAACATTGACATTTCTTTACAGCCTTCAATCTAAG
GAATTTCGAAGACACTAAAACATAGAAAACCGTTTTTCAAAAGTCACCAG
AGCTGTCAGGACGGTTAACCTCATCAAATGTCCAACCAACATTGACATTT
CTTTACAGCCTTCAATCTAAGGAATTTCGAAGACACTAAAACATAGAAAA
CCGTTTTTCAAAAGTCACCAGAGCTGTCAGGACGGTTAACCTCATCAAAT
GTCCAACCAACATTGACATTTCTTTACAGCCTTCAATCTAAGGAATTTCG
AAGACACTAAAACATAGAAAACCGTTTTTCAAAAGTCACCAGAGCTGTCA
GGACGGTTAACCTCATCAAATGTCCAACCAACATTGACATTTCTTTACAG
CCTTCAATCTAAGGAATTTCGAAGACACTAAAACATAGAAAACCGTTTTT
CAAAAGTCACCAGAGCTGTCAGGACGGTTAACCTCATCAAATGTCCAACC
AACATTGACATTTCTTTACAGCCTTCAATCTAAGGAATTTCGAAGACACT
AAAACATAGAAAACCGTTTTTCAAAAGTCACCAGAGCTGTCAGGACGGTT
AACCTCATCAAATGTCCAACCAACATTGACATTTCTTTACAGCCTTCAAT
CTAAGGAATTTCGAAGACACTAAAACATAGAAAACCGTTTTTCAAAAGTC
ACCAGAGCTGTCAGGACGGTTAACCTCATCAAATGTCCAACCAACATTGA
CATTTCTTTACAGCCTTCAATCTAAGGAATTTCGAAGACACTAAAACATA
GAAAACCGTTTTTCAAAAGTCACCAGAGCTGTCAGGACGGTTAACCTCAT
CAAATGTCCAACCAACATTGACATTTCTTTACAGCCTTCAATCTAAGGAA
TTTCGAAGACACTAAAACATAGAAAACCGTTTTTCAAAAGTCACCAGAGC
TGTCAGGACGGTTAACCTCATCAAATGTCCAACCAACATTGACATTTCTT
TACAGCCTTCAATCTAAGGAATTTCGAAGACACTAAAACATAGAAAACCG
TTTTTCAAAAGTCACCAGAGCTGTCAGGACGGTTAACCTCATCAAATGTC
CAACCAACATTGACATTTCTTTACAGCCTTCAATCTAAGGAATTTCGAAG
ACACTAAAACATAGAAAACCGTTTTTCAAAAGTCACCAGAGCTGTCAGGA
CGGTTAACCTCATCAAATGTCCAACCAACATTGACATTTCTTTACAGCCT
TCAATCTAAGGAATTTCGAAGACACTAAAACATAGAAAACCGTTTTTCAA
AAGTCACCAGAGCTGTCAGGACGGTTAACCTCATCAAATGTCCAACCAAC
ATTGACATTTCTTTACAGCCTTCAATCTAAGGAATTTCGAAGACACTAAA
ACATAGAAAACCGTTTTTCAAAAGTCACCAGAGCTGTCAGGACGGTTAAC
CTCATCAAATGTCCAACCAACATTGACATTTCTTTACAGCCTTCAATCTA
AGGAATTTCGAAGACACTAAAACATAGAAAACCGTTTTTCAAAAGTCACC
AGAGCTGTCAGGACGGTTAACCTCATCAAATGTCCAACCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002778-exon-sc0000021-1491911889:697262..699253 | TCONS_00002778-exon-sc0000021-1491911889:697262..699253 | Clytia hemisphaerica | exon |
| TCONS_00002778-exon-sc0000021-1510915933:697262..699253 | TCONS_00002778-exon-sc0000021-1510915933:697262..699253 | Clytia hemisphaerica | exon |
| TCONS_00002778-exon-sc0000021-1575043694:697262..699253 | TCONS_00002778-exon-sc0000021-1575043694:697262..699253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:697262..699253 . |
Blast
The following BLAST results are available for this feature:
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