TCONS_00002789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002789
Unique NameTCONS_00002789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002789 ID=TCONS_00002789|Name=TCONS_00002789|organism=Clytia hemisphaerica|type=transcript|length=337bp
TTATATTTCATTCACGAAATATTATTAAAGAAAATGTAAAACATATTGTG
TACAATGAATAGTAAAACGATTTGAATGTGGCGTTCTTCAGCTTTACTTT
CTTCTGGCTGGACAACAGTATTGTGGGCAGATGGGTACACATTGGGTAAC
GCAAACTTGTGGGcatggtggtggtggtggggcTGGGGCTCCTGGTAATC
CACCTGGTCCTGGTGGTCCTGGTGGCCCTGGGGGTCCTGGAGGTCCTGGT
GGTCCAGCTGGTCCTGGTCCTCCTGGTTGTCCTGGACGTCCTGGGGGTCC
TGGGTTTCCTGGGATTGGTGGGGGTGGAGGTGGTGGT
Run BLAST on NCBI

protein sequence of TCONS_00002789-protein

>TCONS_00002789-protein ID=TCONS_00002789-protein|Name=TCONS_00002789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
TTTSTPTNPRKPRTPRTSRTTRRTRTSWTTRTSRTPRATRTTRTRWITRS
PSPTTTTMPTSLRYPMCTHLPTILLSSQKKVKLKNATFKSFYYSLYTICF
TFSLIIFRE
Run BLAST on NCBI

transcript from alignment at sc0000021:1038397..1038733

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002789 ID=TCONS_00002789|Name=TCONS_00002789|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000021:1038397..1038733 (Clytia hemisphaerica)
ACCACCACCTCCACCCCCACCAATCCCAGGAAACCCAGGACCCCCAGGAC
GTCCAGGACAACCAGGAGGACCAGGACCAGCTGGACCACCAGGACCTCCA
GGACCCCCAGGGCCACCAGGACCACCAGGACCAGGTGGATTACCAGGAGC
CCCAgccccaccaccaccaccatgCCCACAAGTTTGCGTTACCCAATGTG
TACCCATCTGCCCACAATACTGTTGTCCAGCCAGAAGAAAGTAAAGCTGA
AGAACGCCACATTCAAATCGTTTTACTATTCATTGTACACAATATGTTTT
ACATTTTCTTTAATAATATTTCGTGAATGAAATATAA

Coding sequence (CDS) from alignment at sc0000021:1038397..1038733

>TCONS_00002789 ID=TCONS_00002789|Name=TCONS_00002789|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000021:1038397..1038733 (Clytia hemisphaerica)
ACCACCACCTCCACCCCCACCAATCCCAGGAAACCCAGGACCCCCAGGAC
GTCCAGGACAACCAGGAGGACCAGGACCAGCTGGACCACCAGGACCTCCA
GGACCCCCAGGGCCACCAGGACCACCAGGACCAGGTGGATTACCAGGAGC
CCCAgccccaccaccaccaccatgCCCACAAGTTTGCGTTACCCAATGTG
TACCCATCTGCCCACAATACTGTTGTCCAGCCAGAAGAAAGTAAAGCTGA
AGAACGCCACATTCAAATCGTTTTACTATTCATTGTACACAATATGTTTT
ACATTTTCTTTAATAATATTTCGTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001517XLOC_001517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002789-exon-sc0000021-1491911889:1038397..1038733TCONS_00002789-exon-sc0000021-1491911889:1038397..1038733Clytia hemisphaericaexon
TCONS_00002789-exon-sc0000021-1510915933:1038397..1038733TCONS_00002789-exon-sc0000021-1510915933:1038397..1038733Clytia hemisphaericaexon
TCONS_00002789-exon-sc0000021-1575043694:1038397..1038733TCONS_00002789-exon-sc0000021-1575043694:1038397..1038733Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002789-proteinTCONS_00002789-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1038397..1038733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277167	0	0	0	9.34437	13.5866	260.486	340.942	165.618	170.628	401.72	234.322	724.219	748.569	534.128	1375.8	945.662	816.359	2.94634	2.1582	795.902	879.349	872.336	750.041	792.622	830.748	143.659	42.1824	1.53817	1.88058
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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