TCONS_00002792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002792
Unique NameTCONS_00002792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002792 ID=TCONS_00002792|Name=TCONS_00002792|organism=Clytia hemisphaerica|type=transcript|length=1723bp
TGCAGTAATGATGTGATGTATTTCTACAGTTCTTTGATTGAGGGTTCGGC
CATAAGTTTGTGAATCTGATTGTTTTAATAATAAATCCATGATTGTAACc
actgtatttttattttttagaaaaatagattatacaaaaaaataaaaaat
aaaaagatatggAAGAAAGTGAGAATTTACTGGTTGTTATTTTGGATATC
AATGCCAAACAATGGTCCCAACGAGTTGAGGAGTTCAAGAAAGTTGTTGA
CAGtgttatggttttttgtaaTTCCTATCTTATGATGAATCATTCCAATA
AACTAGCTTTTTACACTTGTAACCATAGCAATGCTACCATTTTGTATCCA
GCTGAGTTGGACGAAAATGAGTCTCGAATTCTCGATGGAAAGTTTGAATT
GTTTGTGGAATTGAATACAATACTTTCACGGAAAATCAAAGCTTTGGTTA
ATGAAATTGATGGTAAAATTGGGGATCAGCCTACAACCTCTTTATTGTCT
GGTGCTTTCTCTCAAGCATTGTGTTATATCcataaaaagaagaatgaagA
TCCAAGCGGACAAAGATTGAGCTCACGTATCTTGGTGATTAAGGCAAGCC
CTGATGTTTCATCACAGTATATGCCGGTTATGAATTGCATATTTGCTTCA
CAAAAACATAATATTGCTGTTGACTCATGCTCTCTGTTTCACAGATCAGG
TTTTTTACAACAAGCTGCCGATATCACTGGAGGGACTTATAATTTTGTTG
ATAATGTATCTGGTTTCTTAGAGCTTCTCATATGGATTTACTTGCCTGAA
AAAGGAGTTCGTGAGAAATTTGAACTACCTACTAATGTGGAGATTGATTA
CCGAGCTGCTTGTTTTTGTCATAATACATTGATTGAGATGGGTTTTGTCT
GTTCTGTATGCTTGTCAATTTATTGTAAATTTATGCCCAAGTGTTTGACT
TGTCAGACCAGATTTAGATTACCACAACTACCCCCtatgaaaggaaagaa
aaagaaaaaagttgcatagaaatttaatttcttttgccTTAAGAAATATG
AGTTAATGTCTGGAAACTTTAACTCAAAAATGCAtacttcattttgaata
tttttgattaaagatGACATcggtaaaatcaaaattatgacGTACCAAAA
ATACCATATAGAGCTGGAATGTTTTAATTGATAAACTCAAGAACAAAATA
TGCAAGactattttcaaatatttgatcaatggaaatattttgaagatttc
caagtcaaaattttgaacattGTCTAAATTAGCTTGGCTTAACCTGAATT
TCGTTCGTCGTTCAATTTCTTTAACAGCTCCTAGGATATTGGTCAAGGTT
TACTCAACGGCTGTACCTGTTTCAAGTTGTAAAAACATGACAAATTATAT
TGAACATACAATTGTTTTGATCTCCATTCCTTGATGAATGACGTGACTTG
AGTACTGAAATATCTTCCAATGCTGAAATTGTAACTAGGTTTTCAATAAC
TTTTGTATAACTTTATAAACGGGGAAAGTCCTattaactgaaaaattatt
actgCTTCAATTTTTAATAACTTATTGCCATAAATGTCGAAACCCTCTAA
AAGTATCATAATATGTTGTCTCAGTAATGaagttttaaggtttttttttg
cCCTTCAGACTATGTCATGCTGTTTTCAGGGCTTTTATACCCGAAAGAGA
AAAACTCGAAGAGAAACTTGAAA
Run BLAST on NCBI

protein sequence of TCONS_00002792-protein

>TCONS_00002792-protein ID=TCONS_00002792-protein|Name=TCONS_00002792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MEESENLLVVILDINAKQWSQRVEEFKKVVDSVMVFCNSYLMMNHSNKLA
FYTCNHSNATILYPAELDENESRILDGKFELFVELNTILSRKIKALVNEI
DGKIGDQPTTSLLSGAFSQALCYIHKKKNEDPSGQRLSSRILVIKASPDV
SSQYMPVMNCIFASQKHNIAVDSCSLFHRSGFLQQAADITGGTYNFVDNV
SGFLELLIWIYLPEKGVREKFELPTNVEIDYRAACFCHNTLIEMGFVCSV
CLSIYCKFMPKCLTCQTRFRLPQLPPMKGKKKKKVA
Run BLAST on NCBI

transcript from alignment at sc0000021:1074601..1076323

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002792 ID=TCONS_00002792|Name=TCONS_00002792|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at sc0000021:1074601..1076323 (Clytia hemisphaerica)
TTTCAAGTTTCTCTTCGAGTTTTTCTCTTTCGGGTATAAAAGCCCTGAAA
ACAGCATGACATAGTCTGAAGGgcaaaaaaaaaccttaaaacttCATTAC
TGAGACAACATATTATGATACTTTTAGAGGGTTTCGACATTTATGGCAAT
AAGTTATTAAAAATTGAAGcagtaataatttttcagttaatAGGACTTTC
CCCGTTTATAAAGTTATACAAAAGTTATTGAAAACCTAGTTACAATTTCA
GCATTGGAAGATATTTCAGTACTCAAGTCACGTCATTCATCAAGGAATGG
AGATCAAAACAATTGTATGTTCAATATAATTTGTCATGTTTTTACAACTT
GAAACAGGTACAGCCGTTGAGTAAACCTTGACCAATATCCTAGGAGCTGT
TAAAGAAATTGAACGACGAACGAAATTCAGGTTAAGCCAAGCTAATTTAG
ACaatgttcaaaattttgacttggaaatcttcaaaatatttccattgatc
aaatatttgaaaatagtCTTGCATATTTTGTTCTTGAGTTTATCAATTAA
AACATTCCAGCTCTATATGGTATTTTTGGTACgtcataattttgatttta
ccgATGTCatctttaatcaaaaatattcaaaatgaagtaTGCATTTTTGA
GTTAAAGTTTCCAGACATTAACTCATATTTCTTAAggcaaaagaaattaa
atttctatgcaacttttttctttttctttcctttcataGGGGGTAGTTGT
GGTAATCTAAATCTGGTCTGACAAGTCAAACACTTGGGCATAAATTTACA
ATAAATTGACAAGCATACAGAACAGACAAAACCCATCTCAATCAATGTAT
TATGACAAAAACAAGCAGCTCGGTAATCAATCTCCACATTAGTAGGTAGT
TCAAATTTCTCACGAACTCCTTTTTCAGGCAAGTAAATCCATATGAGAAG
CTCTAAGAAACCAGATACATTATCAACAAAATTATAAGTCCCTCCAGTGA
TATCGGCAGCTTGTTGTAAAAAACCTGATCTGTGAAACAGAGAGCATGAG
TCAACAGCAATATTATGTTTTTGTGAAGCAAATATGCAATTCATAACCGG
CATATACTGTGATGAAACATCAGGGCTTGCCTTAATCACCAAGATACGTG
AGCTCAATCTTTGTCCGCTTGGATcttcattcttctttttatgGATATAA
CACAATGCTTGAGAGAAAGCACCAGACAATAAAGAGGTTGTAGGCTGATC
CCCAATTTTACCATCAATTTCATTAACCAAAGCTTTGATTTTCCGTGAAA
GTATTGTATTCAATTCCACAAACAATTCAAACTTTCCATCGAGAATTCGA
GACTCATTTTCGTCCAACTCAGCTGGATACAAAATGGTAGCATTGCTATG
GTTACAAGTGTAAAAAGCTAGTTTATTGGAATGATTCATCATAAGATAGG
AAttacaaaaaaccataacaCTGTCAACAACTTTCTTGAACTCCTCAACT
CGTTGGGACCATTGTTTGGCATTGATATCCAAAATAACAACCAGTAAATT
CTCACTTTCTTccatatctttttattttttatttttttgtataatctatt
tttctaaaaaataaaaatacagtgGTTACAATCATGGATTTATTATTAAA
ACAATCAGATTCACAAACTTATGGCCGAACCCTCAATCAAAGAACTGTAG
AAATACATCACATCATTACTGCA

Coding sequence (CDS) from alignment at sc0000021:1074601..1076323

>TCONS_00002792 ID=TCONS_00002792|Name=TCONS_00002792|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at sc0000021:1074601..1076323 (Clytia hemisphaerica)
ctatgcaacttttttctttttctttcctttcataGGGGGTAGTTGTGGTA
ATCTAAATCTGGTCTGACAAGTCAAACACTTGGGCATAAATTTACAATAA
ATTGACAAGCATACAGAACAGACAAAACCCATCTCAATCAATGTATTATG
ACAAAAACAAGCAGCTCGGTAATCAATCTCCACATTAGTAGGTAGTTCAA
ATTTCTCACGAACTCCTTTTTCAGGCAAGTAAATCCATATGAGAAGCTCT
AAGAAACCAGATACATTATCAACAAAATTATAAGTCCCTCCAGTGATATC
GGCAGCTTGTTGTAAAAAACCTGATCTGTGAAACAGAGAGCATGAGTCAA
CAGCAATATTATGTTTTTGTGAAGCAAATATGCAATTCATAACCGGCATA
TACTGTGATGAAACATCAGGGCTTGCCTTAATCACCAAGATACGTGAGCT
CAATCTTTGTCCGCTTGGATcttcattcttctttttatgGATATAACACA
ATGCTTGAGAGAAAGCACCAGACAATAAAGAGGTTGTAGGCTGATCCCCA
ATTTTACCATCAATTTCATTAACCAAAGCTTTGATTTTCCGTGAAAGTAT
TGTATTCAATTCCACAAACAATTCAAACTTTCCATCGAGAATTCGAGACT
CATTTTCGTCCAACTCAGCTGGATACAAAATGGTAGCATTGCTATGGTTA
CAAGTGTAAAAAGCTAGTTTATTGGAATGATTCATCATAAGATAGGAAtt
acaaaaaaccataacaCTGTCAACAACTTTCTTGAACTCCTCAACTCGTT
GGGACCATTGTTTGGCATTGATATCCAAAATAACAACCAGTAAATTCTCA
CTTTCTTccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001520XLOC_001520Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002792-proteinTCONS_00002792-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002792-exon-sc0000021-1491911889:1074601..1076323TCONS_00002792-exon-sc0000021-1491911889:1074601..1076323Clytia hemisphaericaexon
TCONS_00002792-exon-sc0000021-1510915933:1074601..1076323TCONS_00002792-exon-sc0000021-1510915933:1074601..1076323Clytia hemisphaericaexon
TCONS_00002792-exon-sc0000021-1575043694:1074601..1076323TCONS_00002792-exon-sc0000021-1575043694:1074601..1076323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1074601..1076323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.5943	37.3614	56.8585	54.8744	8.59544	6.06806	7.14009	7.16394	4.4035	4.40269	4.08343	2.90278	2.8364	2.4439	3.57934	4.62655	4.90793	5.19275	1.91806	2.58058	5.70943	5.66918	20.7689	17.3187	4.30221	6.0401	4.30562	3.84065	10.3255	11.2621
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004600TFIIH_Tfb4/p34
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
Blast
[Close]
BLAST of TCONS_00002792 vs. Swiss-Prot (Human)
Match: TF2H3 (General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 9.857e-76
Identity = 130/295 (44.07%), Postives = 177/295 (60.00%), Query Frame = 3 
Query:  162 EESENLLVVILDINAKQWSQRVEE-----FKKVVDSVMVFCNSYLMMNHSNKLAFYTCNHSNATILYPAELDE--------------NESRILDGKFELFVELNTILSRKIKALVNEIDGKIGDQPTTSLLSGAFSQALCYIHKKKNEDPSGQRLSSRILVIKASPDVSSQYMPVMNCIFASQKHNIAVDSCSLFHRSGFLQQAADITGGTYNFVDNVSGFLELLIWIYLPEKGVREKFELPTNVEIDYRAACFCHNTLIEMGFVCSVCLSIYCKFMPKCLTCQTRFRLPQLPPM 989
            E+  NLLV+++D N   W ++  +       K +D+VMV  NS+L MN SNKLA    +   +  LYP +                 N S   DGK+EL    N ++  +IK L+ + D  I  Q T +LL+G+ ++ALCYIH+   E    Q + SRILVIKA+ D + QYM  MN IFA+QK NI +D+C L   SG LQQA DITGG Y  V  +   L+ L+W++LP++  R +  LP  V +DYRAACFCH  LIE+G+VCSVCLSI+C F P C TC+T F++  LPP+
Sbjct:    5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSD--IKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKI-SLPPV 296
The following BLAST results are available for this feature:
BLAST of TCONS_00002792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2H39.857e-7644.07General transcription factor IIH subunit 3 OS=Homo... [more]
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