TCONS_00002796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002796
Unique NameTCONS_00002796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002796 ID=TCONS_00002796|Name=TCONS_00002796|organism=Clytia hemisphaerica|type=transcript|length=424bp
GAAGATTTATGATCAACTTCtagcaaaagGTGAACGAAGGCTGAGTTGGG
AGTCCTTCGTAACAGCTTTGACCATCCAATATCAAGGAAAGTTTGGTTCG
TTTAAGAACGAATGGCAATTACTGAATCTGTTGATGGACTTGGATCAAGT
CTTCATGAAGTGGAGATTCGTGCATTTGAGTTTAGTTTATCGTCAAATTG
GAGTAAAACGCGGAACTGTAGGCTCATCCGGGTACTATTACCTACGGAGC
ACAATCAGTGAACGTTATCATGTCTTCAAAGATTTGTTTCGACTTTCATC
CTGCTTGATTCCGGAAAGACTTTTTGAGAAATCCTTCTCGATGTGAGAAT
GATGCACGAGGAGAACAATATTAAACCATGCAAGAAAAGACTACAGGAGG
TTCTGGTCAGATTGCTGAGACAAG
Run BLAST on NCBI

protein sequence of TCONS_00002796-protein

>TCONS_00002796-protein ID=TCONS_00002796-protein|Name=TCONS_00002796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
KIYDQLLAKGERRLSWESFVTALTIQYQGKFGSFKNEWQLLNLLMDLDQV
FMKWRFVHLSLVYRQIGVKRGTVGSSGYYYLRSTISERYHVFKDLFRLSS
CLIPERLFEKSFSM
Run BLAST on NCBI

transcript from alignment at sc0000023:102745..104885+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002796 ID=TCONS_00002796|Name=TCONS_00002796|organism=Clytia hemisphaerica|type=transcript|length=2141bp|location=Sequence derived from alignment at sc0000023:102745..104885+ (Clytia hemisphaerica)
GAAGATTTATGATCAACTTCtagcaaaaggtttgttttttataCCCttga
tccaaaaaaaaaaacatgaaagcGAAATTCATCAAGTTCCATAATATCAC
TATAACGTTCAGGGATCAGCGTATAACGTATCTCCCCTACCGTTTTCTCA
CAGAGTATTTTTGAACAAAAGAAACTTCAGTTTCCCTCCCCGATCATTCC
GCGCgagcacaaattttgagaaattcttcgGTTGATTGTGCTTTGTCAGT
AAAGATCTttacataccttatcggggaaaaaaatgtcggggaaaagtgac
aaaagttttgaaggggtgacgaaatttttccccgacgaaatttattcccg
acattttatcacctgaccaaaacttttactcgatttttttatccccgacc
aaaacttttactcgatttttcccccaaccaaaattcaaatgcAAATGTTT
TACGCCTGTAATAACCGAAATTACTGCTTTAAACGTCAAATTTATGAGTT
atattttcgagctagtgaaggaaaccatctcatttggacaatttagtcgg
atagaagtgactaaattgtaaatttggtccgggaaaagtgacgaacttga
aattttggtcgggaaaaagtgacgaaaatgcctctaggtgacgaaatttt
cccccgactTATTAAaacccgacatttttttcctcgATAATATCTCAAAA
AGAATTCATTCACTGACACGAATATTAGGTTCTCTAGCTCCTCGATTGGC
ATTCGTAAACATCTTCAGATCggttttctattgtttttgtaAGTATTCAG
AAAGAGAAACTCCCTCGAATGAGATTGCACTTTAAAGAAAGACTTTTTCC
CTCAGGTGAACGAAGGCTGAGTTGGGAGTCCTTCGTAACAGCTTTGACCA
TCCAATATCAAGGAAAGTTTGGTTCGTTTAAGAACGAATGGCAATTACTG
AATCTGTTGATGGACTTGGATCAAGTCTTCATGAAGTGGAGATGTAAAGG
AAATTTTCCGATAACGAGTGGTCAAATTTATATATTATTGATCCCATTCC
ACGAAATAAAGGctatttcataaattatttcaaGTGCGAGACGCAACTGC
TGCtttgttttgaaaccattactaAGGTGTATCCCTTGAGTCTTTATGTA
TTACATTTACAAATAGAGTGAACTTCTTAATAAATCCCCTGGGAATCATT
TACCATagcaataatttgaaaaaaaagtaagcGTTGCTGGcgatgtaatt
tatgaaaaggtctactGCCGGTTTAGTTTTAAGTTTAAAAGGCTTCAACA
ACGTCAAATAGCTGAATCCATGAATGGACGCGAATCGAAGACAGAGAAAA
TTGATATTGGAGGGGggcataggcgtagcgagatacccttgaaaatttat
gagggagtgcagacgtttatgacatattcattatcttttgataaaacaaa
gacaataattacagtgacGTAAAAACCGCTATCATCCATAAATTTtacag
ggtatctcgctacgcctatagGGGGCTTAAGTTTACTGACAAATTaggct
tttttttttgcaccaGAAGTCAATGAGTTCAAGACAACAATTTATATTTT
CTAATGTTTTGAATATACAGTCTTTAAGATGACTTGACTTGAATCTAGTT
TTAACCTCGTTCTATGTACTTTTTATATTCCAGTCGTGCATTTGAGTTTA
GTTTATCGTCAAATTGGAGTAAAACGCGGAACTGTAGGCTCATCCGGGTA
CTATTACCTACGGAGCACAATCAGGTGAGAAAATCGTCCGCTTAcggttt
ttaaagaaaatcttcaattcttcaattcaatttttttttaaagaaatctt
aACAAATATTCATTGATGGGTAAATTCctaaaagatgtgaaaaattCTTT
GAAGATAAGATCTAATAGAACAAACTGCTCATTTACTTTTTTCGATTTCC
ATCAGCAACAAATCTTTTCTTTTAGTGAACGTTATCATGTCTTCAAAGAT
TTGTTTCGACTTTCATCCTGCTTGATTCCGGAAAGACTTTTTGAGAAATC
CTTCTCGATGTGAGAATGATGCACGAGGAGAACAATATTAAACCATGCAA
GAAAAGACTACAGGAGGTTCTGGTCAGATTGCTGAGACAAG

Coding sequence (CDS) from alignment at sc0000023:102745..104885+

>TCONS_00002796 ID=TCONS_00002796|Name=TCONS_00002796|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at sc0000023:102745..104885+ (Clytia hemisphaerica)
AAGATTTATGATCAACTTCtagcaaaagGTGAACGAAGGCTGAGTTGGGA
GTCCTTCGTAACAGCTTTGACCATCCAATATCAAGGAAAGTTTGGTTCGT
TTAAGAACGAATGGCAATTACTGAATCTGTTGATGGACTTGGATCAAGTC
TTCATGAAGTGGAGATTCGTGCATTTGAGTTTAGTTTATCGTCAAATTGG
AGTAAAACGCGGAACTGTAGGCTCATCCGGGTACTATTACCTACGGAGCA
CAATCAGTGAACGTTATCATGTCTTCAAAGATTTGTTTCGACTTTCATCC
TGCTTGATTCCGGAAAGACTTTTTGAGAAATCCTTCTCGATGTGAAAGAT
TTATGATCAACTTCtagcaaaagGTGAACGAAGGCTGAGTTGGGAGTCCT
TCGTAACAGCTTTGACCATCCAATATCAAGGAAAGTTTGGTTCGTTTAAG
AACGAATGGCAATTACTGAATCTGTTGATGGACTTGGATCAAGTCTTCAT
GAAGTGGAGATTCGTGCATTTGAGTTTAGTTTATCGTCAAATTGGAGTAA
AACGCGGAACTGTAGGCTCATCCGGGTACTATTACCTACGGAGCACAATC
AGTGAACGTTATCATGTCTTCAAAGATTTGTTTCGACTTTCATCCTGCTT
GATTCCGGAAAGACTTTTTGAGAAATCCTTCTCGATGTGAAAGATTTATG
ATCAACTTCtagcaaaagGTGAACGAAGGCTGAGTTGGGAGTCCTTCGTA
ACAGCTTTGACCATCCAATATCAAGGAAAGTTTGGTTCGTTTAAGAACGA
ATGGCAATTACTGAATCTGTTGATGGACTTGGATCAAGTCTTCATGAAGT
GGAGATTCGTGCATTTGAGTTTAGTTTATCGTCAAATTGGAGTAAAACGC
GGAACTGTAGGCTCATCCGGGTACTATTACCTACGGAGCACAATCAGTGA
ACGTTATCATGTCTTCAAAGATTTGTTTCGACTTTCATCCTGCTTGATTC
CGGAAAGACTTTTTGAGAAATCCTTCTCGATGTGAAAGATTTATGATCAA
CTTCtagcaaaagGTGAACGAAGGCTGAGTTGGGAGTCCTTCGTAACAGC
TTTGACCATCCAATATCAAGGAAAGTTTGGTTCGTTTAAGAACGAATGGC
AATTACTGAATCTGTTGATGGACTTGGATCAAGTCTTCATGAAGTGGAGA
TTCGTGCATTTGAGTTTAGTTTATCGTCAAATTGGAGTAAAACGCGGAAC
TGTAGGCTCATCCGGGTACTATTACCTACGGAGCACAATCAGTGAACGTT
ATCATGTCTTCAAAGATTTGTTTCGACTTTCATCCTGCTTGATTCCGGAA
AGACTTTTTGAGAAATCCTTCTCGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001524XLOC_001524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002796-exon-sc0000023-1491911889:102745..102773TCONS_00002796-exon-sc0000023-1491911889:102745..102773Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1510915933:102745..102773TCONS_00002796-exon-sc0000023-1510915933:102745..102773Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1575043694:102745..102773TCONS_00002796-exon-sc0000023-1575043694:102745..102773Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1491911889:103600..103737TCONS_00002796-exon-sc0000023-1491911889:103600..103737Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1510915933:103600..103737TCONS_00002796-exon-sc0000023-1510915933:103600..103737Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1575043694:103600..103737TCONS_00002796-exon-sc0000023-1575043694:103600..103737Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1491911889:104428..104518TCONS_00002796-exon-sc0000023-1491911889:104428..104518Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1510915933:104428..104518TCONS_00002796-exon-sc0000023-1510915933:104428..104518Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1575043694:104428..104518TCONS_00002796-exon-sc0000023-1575043694:104428..104518Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1491911889:104720..104885TCONS_00002796-exon-sc0000023-1491911889:104720..104885Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1510915933:104720..104885TCONS_00002796-exon-sc0000023-1510915933:104720..104885Clytia hemisphaericaexon
TCONS_00002796-exon-sc0000023-1575043694:104720..104885TCONS_00002796-exon-sc0000023-1575043694:104720..104885Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002796-proteinTCONS_00002796-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:102745..104885 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.198612	0	0	0	0	5.04826	7.864	7.87077	7.54156	0.619372	1.14271	7.1919	5.8738	0.159544	0	0	0	0.531501	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004981Trp_2_3_dOase
Vocabulary: Biological Process
TermDefinition
GO:0019441tryptophan catabolic process to kynurenine
Vocabulary: Molecular Function
TermDefinition
GO:0004833tryptophan 2,3-dioxygenase activity
GO:0020037heme binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019441 tryptophan catabolic process to kynurenine
molecular_function GO:0020037 heme binding
molecular_function GO:0004833 tryptophan 2,3-dioxygenase activity
Blast
[Close]
BLAST of TCONS_00002796 vs. Swiss-Prot (Human)
Match: T23O (Tryptophan 2,3-dioxygenase OS=Homo sapiens GN=TDO2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.432e-28
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:    2 KIYDQLLAKGERRLSWESFVTALTIQYQGKFGSFKNEWQLLNLLMDLDQVFMKWRFVHLSLVYRQIGVKRGTVGSSGYYYLRSTISERYHVFKDLFRLSSCLIP 313
            K ++ LL+KGERRLS+ +   AL I +  +   F+  +QLL  LMD+D +  KWR+ H+ +V+R +G K GT GSSGY+YLRST+S+RY VF DLF LS+ LIP
Sbjct:  271 KRHEHLLSKGERRLSYRALQGALMIYFYREEPRFQVPFQLLTSLMDIDSLMTKWRYNHVCMVHRMLGSKAGTGGSSGYHYLRSTVSDRYKVFVDLFNLSTYLIP 374
The following BLAST results are available for this feature:
BLAST of TCONS_00002796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T23O1.432e-2851.92Tryptophan 2,3-dioxygenase OS=Homo sapiens GN=TDO2... [more]
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