TCONS_00002799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002799
Unique NameTCONS_00002799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002799 ID=TCONS_00002799|Name=TCONS_00002799|organism=Clytia hemisphaerica|type=transcript|length=1951bp
AGGTCGTAAAAAttttatgtttacaaaaaatcagaaacaaacATGGCGTC
CAGAGgaggaaaaacaaagaaacctaCGACTTACCTTGGAAAAACCAACA
AGAAATTCGAACATGTTAAGGCAGTGGTGGATACAGgTTCTAGTGTTTCC
AACTACATGTCCAAAATCGAGGATCTACGGAAAAATTATAGATTTCGCAA
AGATGAATTATTCAAAAGGATGAAAATCTCAACGTTTTCGCAATTGGTAT
TGCAAGTTGCAGAAGtggtaaatttagaaatggaaAGAATTTCAGAATTG
GATGAAAACTCTCCCAGAAGTCTACTTCCAGAACAAGAAGAACAAACAGA
CGGAGGTGGCACCGATCGATCTTGTCTACTAGATGTTATACGCGGTGTCG
GGGAACTGAGTACGAGtggaaacaacaacaacaataatgaTACAGTTGAA
TCTGAAGAAAAAGAACAACACCACCACCACAGAGAGATAATTGCACCTGA
CCCGTCGAGTCTTCCCTATCTGCTGCTTGATATACGTGACAGTGATGCTT
TTGAAGAAGGACATATTATCGGAGcCATCAACTATCCATCAGCAATGTTA
AATAGGACAGTTAATTATCTCTCCAAAGAAATATGCGCATTCAAAAACAA
ACCTGGGAAAATAATAATTGTTTACGACGATGACGAAAAGCTTGCTCCAC
AAGTCGCCACCTCGCTTTtacaaaaagatgttgaaaatgtCATTATGCTG
TCAGGAGgaaTGAAAGTTTTACACAAGAAATTTCCATCTTGTTTCATCAC
GGGGACAGTACCTTCCACTTGTTTCTCACCAAAGACAGACCGCAAAGGGA
AATTGAAACCACCTCCAAAAGTCATTTCAAATATAGGAGTGGAATGGTAC
ACACCAGAACTGTTAGAATCAATTCAAGAGCATCTGGATGAAGTCCTTCT
CAGTAACGAGTCAAGTCGAATGTCTTCACGTACTACCACACGAAATAGTA
AAGTTTCATCCGCTCGCTCCAGCGTTCCATCAACTGCTTCAAGCTATCGC
TGACGAGTTTAATCAATTATGTTGTTTTAAACACAGAATATCCCTAGCAC
AGACAATTTAGCAACTTGACATTGGATTTTTCCGTGACCTTATACGCTTT
GTAATTATcttcctttcaattttttttcgaaatgtcGTCATGGAACGTTA
GTTTGGGACTAAAGCCTGATTTGGTATATTATTCAACTAAATTCAACTAG
CAGCAAAAATCCtgaacatttttaattttggcgtgaataaattttaaaga
atggtcaaactttttaattttgccgaatGACAGACTGAATCTGTTCTATT
TTTGGGGAATTTTGTCTAAACTCGCCATGTTCACCAGAATTAGCTCTCAC
CAAAATTATGTTCCCTTAATGTACGACAAGGAATTACCAGAGCTTGTTGA
TGAACTATAAAACCCCTCTAATTTGTCTTTACCGAAAAAGGACGAGATGT
TTcgtgttttattttttgtttaataattttatgtttttgtgaTTTCCTAT
AAGGTTTCTGGAAAATTTTTCGATGTTTTAAATACTCAAATTTTTCTCCA
TGAGGAAAGATATTTAcgaaatagaaaaaagaaattcgaaaaatattatt
aaagtTTATGCCTTGACTCAACTCAAGCAATGGCAACGTTAACAATGGTA
AATCCTCATATGACGTCACGACGTGGaaaaaatcgtcaattttttcAGGC
ACCATTTagctttattttaagaaaatagaaaaagaaaatatttgttttta
tttactgGAAATAGTATCCTTGTAAAATTGtattaaaattattattataa
atgttcatttcttttttataattattatatACACCATTTTTACTAATGCT
GAATACATTTGAAAACGatttaaaataaagaaatataaattgacaaaaga
g
Run BLAST on NCBI

transcript from alignment at sc0000023:185327..200099+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002799 ID=TCONS_00002799|Name=TCONS_00002799|organism=Clytia hemisphaerica|type=transcript|length=14773bp|location=Sequence derived from alignment at sc0000023:185327..200099+ (Clytia hemisphaerica)
AGGTCGTAAAAAttttatgtttacaaaaaatcagaaacaaacATGGCGTC
CAGAGgaggaaaaacaaagaaacctaCGGTGAGAAATTTTCCATAAATTT
CGTTAATTTTCCTCGGTACCAGTGGAAATACTCCTTTTAAAACATAGGAT
GATGTCTATTCCTGTAGTACATAACTAGAAGAGTGATAATTTCCccaatt
tttacaaaatcatAATAAAACGTCGTTCACAAGTAAAATATCTTACGGAA
TAAATTTATATTGATGAGAATAGATCGGCAAGCTCATATCCATCACAAAA
TAAAACAAGGCTCTGGTCTTATATGCAAATTAATGACTTAATCTCTATCT
TCATTGTTTATCTTGCTTTATCTCTTTATCATGCTTTTATAATTATATAC
ATTATTTTTATGTATTAGTACAATCTTGGGGGGCTCACCCCGAAATATGT
TGAGAATTTAGTGTGTGTTAACAATTTTCACAATTTAAAGCTCGGGCAAG
AATTGCTAATTTTAGAACTTCCACTTTctttaatttaatattttaatttt
tgagggGCTCGGTGGCTTCTCtagcagtatagacctaactcttcttCATA
CAAAACTTACgcacgggaaacgcatatttgtaAGTGcattttatagtttt
gattcccatagaagaaatagaaatagaaatcacTAGACAGTTCCCGTTGT
TgcaaacgccggtttagcttgcgcatcaaaagcccttGATGACAAAGATG
GTATTGTTGATCAGTGCTGCAAATAGAAaaatttcagttggccggtaatt
ttTCGAGTGTAACGAGCAGGGGGTCTGGCGGAACCATCTTTGTAGTCTGT
TATTACAGATTGACTTATTGGGTTattagattggctaaacacctatttta
ATGAAGCGCTATTAAGTATTAATCTAAGCctctaatcttcaaattttaac
cggacaaaatgaaaaactgagcttcAGAATGGCCGGTAGAAACTATGAAA
TGGctggtaattaccggtcactggccgttatttgcagcactgttgatgct
ctctaactttATCTTTAAGGGGGATATGAATTAGTTTTTTATCAACCACA
GGAGTATATCGAGTAGTGTGAAGATGTTTTGTAAATACATTCTTATAATA
TATGCTTCAAATGGAATAAGAGAATGAGACTTGAAATCTTCACCATAAAT
ATGAGCTTAGTAAATAATAAACCTTcaattatgagagtttcttccGGAAG
TTTGAAAgcgatttcaatttaattgaaaacagGAACTTATCATTGAGcag
taaaacgtcaaattgagagCGTCAATATATCATCAGTGTATAAGAATGTG
CAACATGACGCGCCTTAAAAGACCAGATAATAAATACAtgccgtggtata
gtggtagtcgaccttgacttctgtgcaggaggccagggttcgattcccac
tcatgGCAGTTCACTTTACAAGTGAACCTTCCTTTGcccaggtcaaccca
tgccatggtTAGTaagcctctaaagcctcctgcacagaaccaaatagaaa
tagaaatagaaacattgatttcaaaacaatcatGGTTATATCCGAACTTA
CGGGACAACAACTTATATTCACTTCTCGCGCGGAAGACCTTCGTTTTTTA
CCTTGCGCAAAAACTATATTTTTACTAACTTTTTCGTAGAAAGTGCCAGG
CCttctaaagtttgaaaatttatgtcacatcgtgttttgAATATTGACGT
CAGAATTATTTTTGTTAAGAAGTCACTGCAGGAGCTTCTTGCGTTACAGT
AATNATTGACGTTAGAATTATTTTTGTTAAGAAGTCACTGCAGGAGCTTC
TTGCGTTACagtaatttttcataaactcatttagtatagtaaaatattct
ggttttcatgttaatagatgctgttttagagctttagggcTAGCCTGtcc
aaacatcaatttgtcagacctaataaaattaataacggcacactgtcatc
attgacaatcaaacaaacaattttctgtcaagagccttgcaAACATTCCA
ACAATTTCCATAAAAATGGTCTGCTGCagctaagtctaccattttacaTA
GTGCGCGGTCTGAGGATTGAGACGAGAACGCTTGCAGAATGCCCGCACGG
TTTAATCTGTCaattacagattttttttctcaggcGAAGGGACGCAAAGC
AGTTCTAGCTTAATATAGTGCCGAGGATCATcattggatagtattcaatt
atcattatttctttattttcatttctggaacttttgcaaaaaaaaggaaa
aatacaaaagttgtaTGTTTTACTGCTAATAGTAACATTAACTgctttaa
ccctttcagtcccggagttttcacttatagtatgaggatcattttgattg
aaaaaaaattgtaaaatgacgTGTCACGTGACCGgagaaaggcaaaaaaa
aatttgaaaacagcaatttttagccattcaatgataattttttttatgaa
aaaatggtttaaacccattcattcttctgataaatgtttagcacaacagt
atctactaactgaaaaaaaaattgtttggttagccctcatagaaaaatca
taatgattgatagaagtttgtaaaaaatcccattttcggccttacagatt
ttgcttgcaaaaatttttgtaaatacttttgtaaacaaCACTTTTTACTC
AAACAAGCTTTTTTATGCGGTCTTTTGCACACGACGCGCTATCTTATCTT
CTATGAAAGCTACTTAAAGACATCTCTTTATTTCCCGCCAAAACATgaca
atttgaaaaagaagtcaGGGACGGCTGTGCAGTCCTCTGGGAAAAAACGA
CGGGTCCAAAGGGACTGCAGTGCGGTTGTCTGGGGCTGAAAGGGTTAAGA
CAAACCCTATGCATAAACATTGCATCCCTACATTCCTCTTTGTACATGAG
GATAAGCTTAGAAATTCAGTCTGGGTTTCCTTTCTCTATAAATTGATTAT
ATATTGTTGTATTGAGATTATAGATGAAAGAAGGTCAGAATAATAATGAA
AGAAGGTCATAATCACTGATATTAATTAAGACTTTTTATGCTTTTAAAAG
ACTCGGAGACAAAAAAATCTTAGTCAGCTGACTAAATGCCAACAAATTTT
CCTTGAATGCTAGCAAAACTCAGTTTGTTATTTTCTGTTCCTCATGGAGA
CGGATGGACTGTTTTCCAATGATCGATCTCTGCGGTAAAATCCTTACACA
AAGCAAGAGTGTGAAATATTTGGTTGTGCACCTTGATGAACTGCTAAATT
GAGAAGGGCATATGGAGCAATTTCCAAGCTTCGTCAATGTACCAATTCAC
ATCCTCCatttatcatgcaatttttgTCTCTCATGTCCACTACGCTAGCC
AACTATAGGGCATTTTCTTCAAAGGGTTCAATGTTACTTACTTTGCAATG
atacttttgttgtttttttctattttatggTACTCATCCAATTTGTTAAA
TCGGATGATTGACCATTACTGATACATTGTTTGAAATAGCTATCATGAAC
TATCATGAATAATTAGGAAGCAGCAGTTCGTCTGGCACTGCATTGAGGAA
TTGGTCAAGGTGCTGtttaaagcttaaaaaatatgaagaaattGAAACTA
GCAACAACTTATATTTCAAtcaccttaagggaagaaatttttgcgggatt
taattttgcggttcacAGCTCAAATTTTGGAAGCTTTGCGAAGtttaatt
ttgtgtttttgattACAATATGGCCTATCTTACCCTAAAAAGACCAAATT
TGGAGGTGGTTTTTTACATTCTGAGAATACatgtttttcgcaaaatttga
cTGCGGggatttgccaaaaaactgcaaaattaaattacgaaaaaatttgt
tcagcaaaaatttgttcccttgAGGCAATTTAAATCcaaattattttgtt
aaaaaactTCAACACACACTACAACCAATTGCTCTATTGCcagaatatat
tttttaaaggcATATAAACTTTCGTGAAAATTCGGTACAAATTCTTGAAC
GGGCCATTTGCGAAaatttatgctcgcgaaaaattcttgaaaaatagaaa
atctgtaaaacttttaACTTTATGGCACTTTAGCCTGTTAAAGCCTCATA
TGTTATAAGATAAAAGTTTCAATCCAATTCAAGAAGAATTCGTACTATGT
TAGTAAACCCTCTATGGTTTTTTTTGtgtgaaaattctcatttctctGTT
TTTTAACATCAAATTCGTTAAATGAATGTCATAAGTTTTGTGGTTTTTCt
acctcgcaaaagtttgtacgcctaaaaaaGTAGTGTCAATTTTGgtcaat
tctcaaaaataactcTGTTTACTTTTTATAGACTTACCTTGGAAAAACCA
ACAAGAAATTCGAACATGTTAAGGCAGTGGTGGATACAGGTATTTTAGTC
TAGTTGTTTTGATTCTTTCAATTAGGCCaggttctttttttttttttttc
tttttttttcaagcgtAGAAAACTTTATTATCGCACGGAGGCAGTCCCAG
CACGCCAAATATTAAATATATACTACACAATTTTTGCACGGAGGCAGTCC
CGGCACGCCAAATATTAGATATGTTAAATAaaataagttttgttttttca
ctAGAACTATATGAGAGCGAAGAAGAAAGACTATCTTTGCTCCATGGAGT
TCTGCTGCCGCGGAGGCACAGGAGAACCGAACTCAAGAGGGCAAAGTTAA
TCTTTCTTCTTACCCAAGTTGTTGTGATGGCAAGGGACTCGTTTCGTTTT
TCAGATAAAAGTTCTGATAAtcttttgtaaaaatgtttCGTTTCTCTCCC
CATTCCGCCCATTGCGGTGAAAACAATTGGGGTAAAGGAGCCGTGCTCGA
CTTTCATGATTCTTGAATTGTAAACGTTCTTTTTCTCCCTTTCGTTTGCA
TCGCATGCTTTGGAGACAGTGGAATTCCTGAACTTTTTGGCGATTGGTTT
GAAAACCCTTACGTCGAAGAATGCCTTCTGGCCAGGAATCCAAAATCCCC
TAGCAGCAATGTCGAGACAGGCATGGTCTTGGATGTTGGTCGATTTAGTT
TCAAAAGTCTCCCCTGACAAGGTGGTCAATATCGGTTCGACCTTCACGTC
CTTGCATACTTGTGTCAGGAGGGATGCTGTGGTGTCACGGATGGAATTAT
GACGCTGAATGATGAAACCGCCTTTCTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCG
TCTAGCCTTTGAAGGTGTTGTTTAATGTTGGGGATTGTCCTTAGGGTAAA
GTTGAGCTTGTGCTTGTACCCTGATGTGAAGCAGGTGTAGGCTTCGTGTG
GGGCAATCTTGGCGATTTCTGTGAGCGTTTCGATTTCGCTGATCCACGTG
TTGACTTTATCGGTGATGAATTCTTCACGGAAGTTTTCTGAACCGATAGC
AGCTCCGAGGTGTTTCTTTCCTTCGGTAGTGATTTTAATGTTAGTATCTT
TGAAGATTTCAGTGGCTTCTTCAAGATATTGTGGTTTGACGATTACCCAC
GTTTTGCTGGCTTGTTGAAAGTAGCCGTATTTCGGTCCCCACTTGACGAT
GGTATCCCACAATCGTTTGAGTCCACGAATCGTACCGCCTCCGAAAACGT
CATCGGCATATCCAGCTGCTTTTGTGTTCGTGTTGTGGTCGCGCAGTTTG
CCAACTGTGTACATGATGAGTGGGATTGTTGCGATCGCGTAGACCAATCC
GGCTATCGGANTGTTCGTGTTGTGGTCGCGCAGTTCGCCAACTGTGTACA
TGATGAGTGGGATTGTTGCGATCGCGTAGACTAATCCGGCTATCGGGTCG
CCTTGTGTGGTTCCTTCGGAAGAAGCGATTTCGATTCCGCCGATAACGAA
AAGTCTAGATGGTGAGCTGTAGCAATTCGTCGTAAAGGTGGCGATGGATG
GACAAATTACATTGACATTATGCAGGAATGCGTTTCGATTGACCGCGTTG
AAAGCATTTGAGGCATCAACCAGCATAACCGCTTCGGTATCATCTTGTCG
AAAGATTTCTCTCAGCGCGCGAATAGCAGCTTCACAGCCTGCATCTTGGA
CGGCGCAAACTTGCAAAGAACCAACGGAATCAGCGATGTCTTGTTTCAGT
AATCGCGCTACGGTTTTACCGATGATTCGTCTCAATGTTTCACCGATGCC
GATTGGTCGTAACCTGGGATTTTTGTTCAACGGGATTAGTCGGTTCTTTT
GGGTTGTTGTTGCTTGAACACATTAACACACACCAAACATTTTTTGGACT
AGTATCGGTATCACACCTAAAACCAGCTAAAATTTTAATTCTATTGCCGC
AGGTTATATGGTTTTATTAGacacaaaaactttttaatgaCCATGTCAAT
TTTACTTTCACTTTACAAAAAACAGTGTTATGTCACgcaatttttgattt
gatatcTTATatgtttcatttctttttaaataggTTCTAGTGTTTCCAAC
TACATGTCCAAAATCGAGGATCTACGGAAAAGTAAGTTGTATGCTTCACC
ATGAAAAAGAAAGTGAGACAGCAGGGAGATTTTGTAAACGGTGACATTGT
AGTGAAATTTCTCACATTTCTTCCTTTGGTCGATAATTTTTTGACATTCA
TTTCTTCCTAATTTATGATCTACCTTTAAGCTACAATAAGATATAAAAAG
TGCGGTTGTCTGAATTAGTGTAATTTGCATGCTTTGTTGGTTGTGTGCTA
TTTTCGAATTTGtaagcaatgttttgtttgttttttcttaaccAGATTAT
AGATTTCGCAAAGATGAATTATTCAAAAGGATGAAAATCTCAACGTTTTC
GCAATTGGTAAGAAAGCATTAAATATTATTTTGTGAACAAAAGTTAGCTC
AAGTTTAATTAGttgattttgaaatcaaatgGTCTTGTATGGTCAAGAAG
CATTAATTTgctctcttttttttaaatgtttttctccAGGTATTGCAAGT
TGCAGAAGtggtaaatttagaaatggaaAGAATTTCAGAATTGGATGAAA
ACTCTCCCAGAAGTCTACTTCCAGGTTTGTTTTTAGTTAGAGCTTTCTCC
ACTACCTGATGAAAATAACCAATTTTAAAATGGTTACCCTTTTAGTTCAA
TGTTAAAAAAGCTGGTACAAAATGTTATATCAGGAATCAGGTCTTTTTTG
GACACCATGAAATATACTTTGACATTCTTCCTTTTTGTCAGCAATACTGT
CATTTGAGGTTATTTTCGTAAGTGTGAGATAACTGTCATAGAATGAAAAA
TGTTCTGGTCTTTGATATATATGTGCAAAGTCACAACAGGACTTGCTCAC
AAAAATTTATCCAACTTAGGTATTATAATCAATCGATTTCATTTCTTCAG
AACAAGAAGAACAAACAGACGGAGGTGGCACCGATCGATCTTGTCTACTA
GAGTAAGGTTTTACGCCAAATCATTGTGTACCCTCAAAAGTTGTTAAATT
CTATAATATAAAACTATTATTCTAATCTCAACTTCAATATATACTATAAT
ATATGTTTCCCCATTAAAGTACcctaaaggaagaaattttggcgggaatt
taatttgacggatggCCGAaatagttttttcagagggaatttaatttggc
tgatggctggaaaaattaaataggatattttttgccaaaattgttATTCG
ATAAgcaaaaaaacttgttttaTAGGCCTAAAATAGCACCAATTTGGGGA
ATGTGTTAAATaataaatattattatatacctgtaggcaaaaacagccat
tgaataattcctaatataccatggctattataccacggtagaattatttt
tcaaattttgctttcaaagtttgatttttttgtcgctcttgttgttatca
aagaaattcattaaaataaatctattgtcaatCTCATGAACAAATTTAat
gactcaaagtaattaagaaaatcattaaaaaagaaaaacgttcgaacgtt
cgattatgggagtgttttaagtGAAACATTTAACTATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
cggtgatgtatattcaactcggcttcgcctcgttgaatattacatcacct
cgggttaataaatctcaataaccaacttttacccattgaatatctgctta
aaataaatttggcgggaatttaatttggcggatggaagaaaaaataaatt
ttggctggaatttagTTTGGTGGATTTtggctaaatccgccaaatccgcc
aaaatttcttcctttaaggtaccttCAATTTTAATGGAATCTGGATTTTA
CGTTagcatttcttttgtttttacattAACTTAAACCTGTTTTGTAGCAA
TGGATTTTAGTGCCATTTAGTTTAGGTTCCTTTTAATTGTTTGAACGGAA
GTCATTGTCAACAGTCTATTTCACAATATCTTTATATTTCTTACAGTGTT
ATACGCGGTGTCGGGGAACTGAGTACGAGtggaaacaacaacaacaataa
tgaTACAGTTGAATCTGAAGAAAAAGAACAACACCACCACCACAGAGAGA
TAATTGCACCTGACCCGTCGAGTCTTCCCTATCTGCTGCTTGATATACGT
GACAGTGATGCTTTTGAAGAAGGACATATTATCGGAGGTAAAAATCCCTT
TATCACCCTgacaaatccgccaaattttctctccgccaaaatttcttccc
ataAGGTAATTCATACTTCTTAGAATTTTCGATTAAAACAATCATTTCAA
GGTGAAAAAGAATCAAGTTTTACCCtgacttttatcaaaattagtTCGAC
GGCGTTCTAAATCCATTCTCACTAAATTCTAAAACATTTGTGCCTTTCTA
AGTCCATCGCCAAATTCAATAACTTTTAGCATTTTTACTTCTCgacaaaa
ttagttccctcaaGGTTTTAATGATTGATTACCCtgacaaaaagacaaaa
aaatctcTTGCGTTGAAGTTTTAATTTAAAATGttcctttctttttattt
ctagcCATCAACTATCCATCAGCAATGTTAAATAGGACAGTTAATTATCT
CTCCAAAGAAATATGCGCATTCGTAtctttttcaaatcattttcacACAC
TTTAATCTGATTTGTAACAGCTACTACACCGACTttcaaacgtcataatt
attagatAACCTTTCTATAGAAACTTAAATTCAAGCCTTCGGCGATTCAG
TGTTTGGCCCCAAACCAGGTAGATTAGAATGATCAACAATATTGTTGAGA
TTTGCCTATATAGCTTCTTAAAAGTTGGCTATTTGTCCTCCCTGATGTTC
AAGTTTTTTTTCCTTGACAATCAAATGTTCACACGATAGAAAAACAAACC
TGGGAAAATAATAATTGTTTACGACGATGACGAAAAGCTTGCTCCACAAG
TCGCCACCTCGCTTTtacaaaaagatgttgaaaatgtCATTATGCTGTCA
GGAGGTTAGTTAGTTCGTGGCTTGTCACTTACAATAATGATACGAAGATC
AGAGGGTTTTCAAACAACCCTATATAGGTTCCTTTAGCTTTTCACTTTTT
GTAATCTTTAGTTCTTGACCAAAAGGTTTGGGTTAAAAGTTTGAATACAG
AGggggtcaaaatttaaaaatttatttctNCCTCGTTGTtacaaaaagat
gttgaaaatgtCATTATGCTGTCAGGAGGTTAGTTAGTTCGTGGCTCGTC
ACTTACAATAATGATACGAAGATCAGAGGGTTTTCAAACAACCCTATAAG
TTCCTTTGGTTTCACTTTTTGTAATCTTTAGTTCTTGATCAAAATTTGGG
TTAAAAAGTTTGAATACAGAGGGGGTCAGAATTGAAAAACTTATCTCCAA
ACACCTCAAAAGGTGAACAAGATaaatattctcaaaaataaGTAAACGGG
GATCTTAACGAGGTCTAGTTCAGGAATTCAGTTTTATTATTCAAGATCGA
TTTTCTCGCCACCTCATTGACACCCTTTCTGCCCGCAGAGGGTTTTCTGA
AATCGTATCTCACCAGAGCAAttcattgtttttaatttttaggaaTGAAA
GTTTTACACAAGAAATTTCCATCTTGTTTCATCACGGGGACAGTACCTTC
CACTTGTTTCTCACCAAAGACAGACCGCAAAGGGAAATTGAAACCACCTC
CAAAAGTCATTTCAAATATAGGAGTGGAATGGTACACACCAGAACGTatc
tttttcaaatgaaatattACTTCACTTTGTTAAGTTTTTATTTGGACCCA
CTGACTTCTTTTCTTCTCCACAGGATAGTTTTTTTCCTCGTGAAATTTCT
CGAGAGATAAAGTAACGCAATTGTACAgaacattttgaatttgattagTT
TTTTATCAGTAGAACTTCacgtatctcctaccatttgcttacataacact
tttaaacaaaagaaaaagatcaacATCCATCCCTTCCTGTTCTTCAAATA
AGTCCAAATAGGTCCATTATATTTTATACACGTAAAGGggttggacgaac
atttccagggggtaattcgaagaagaatttccagagagaaagttttttat
tcttccaggaggtaaaaagttattttcaattttccagaGAATAAAAGGCT
GATTTTAGTTCATCAACCCTTACTTTTAGGTATGAACTTTTCCAAGGGGT
GTTTTGGCAAATTTGCTATTTTCCAGGGGCATCCAGGTGTCTTCAAGAAT
TATCTTTGGCTTGAAAATTTTCGTCCACCTGCACGAATGGACTTTAAATG
GTATGCCCTTTAGAATACCTTATAAAAACTGACAAGTTGTGTAATGCGGA
AATTGATAAATCGGACTCGTGTGAAAACTGATATCCCAGGGTGGGACACT
CGTTTCGTTTTTCTCACGGATGCGAAATCGTAAATAACACCCTTAGTGTT
TACACTATGTTGCATTGAGTATCAGACTAAAACATctcaaatttataatt
taaGTCAGATTATGATTGTAGATTGAGCGTTAAGTTTGATAATTGATTCG
ACAAGGTGTAAACACTTGTCAATTACCTTTTCACACCCGCGGAAAAAACG
AACCGGGTCACACACTGGGAAATCAGTTTTCACACGAGTGTGATTTGTGT
AGTAACGAATCGATTCAATTGTTCTTGCATGAAAGTTAGATCATTTCCTT
AACTCTTGATTTCTGAAACAATTTAGTGTTAGAATCAATTCAAGAGCATC
TGGATGAAGTCCTTCTCAGTAACGAGTCAAGTAAGGGCAATCGTTGTTTG
CTTTTGGCTTTCTAATAAGTACCTCAAATATGATCAATTCTTTTTAAACT
TCCCAGCATTCTTCACTATCTTTTCCCAACCATGTTTGTAAATTCAtaaa
tgaaatatttctttcccTGAACAAATAAAGTCTATTCTTTTGATTAAGCT
GTTTTGAATTTTCACTACttctcatcatcatcatcatcatccttcgacct
aggtccgaatggacctaggtcggaaacaaacaataaccaTCCCTCCACAG
CTCTCGATCAGCCATTGCAGCGCCCAGTTCCTCAATCTCTAGCCCTGTTT
CTCGTTTCAAAGTATCAAGAAAAGTGCGCTTTCTCGAGCGCCTAGTGCCC
GCAGGACACCAAAGTAAGACCTCAGACACCATTTCGTTTTTCGCACGGAA
ACAGTGACCTGAGAAAGAGAGCATCCTGCTAGTCAGGACAGAGGAAATTC
TTGGGAGTCCATGATATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGTTTTCTCTTCTTTTATCTGGTGAGCCACCTTTGAG
CTGAATAGAAGGGTGGTCTTTTCGACCTGTTAGATCATTGATCGTTTTCC
AAGCGGCCGAGTGGTTCACTACTTCTGAACTTTTGCATAAACTGTAAAAA
TGTTTTAACAGCATGAAATGATAAATCTTTTTCTAGGTCGAATGTCTTCA
CGTACTACCACACGAAATAGTAAAGTTTCATCCGCTCGCTCCAGCGTTCC
ATCAACTGCTTCAAGCTATCGCTGACGAGTTTAATCAATTATGTTGTTTT
AAACACAGAATATCCCTAGCACAGACAATTTAGCAACTTGACATTGGATT
TTTCCGTGACCTTATACGCTTTGTAATTATcttcctttcaattttttttc
gaaatgtcGTCATGGAACGTTAGTTTGGGACTAAAGCCTGATTTGGTATA
TTATTCAACTAAATTCAACTAGCAGCAAAAATCCtgaacatttttaattt
tggcgtgaataaattttaaagaatggtcaaactttttaattttgccgaat
GACAGACTGAATCTGTTCTATTTTTGGGGAATTTTGTCTAAACTCGCCAT
GTTCACCAGAATTAGCTCTCACCAAAATTATGTTCCCTTAATGTACGACA
AGGAATTACCAGAGCTTGTTGATGAACTATAAAACCCCTCTAATTTGTCT
TTACCGAAAAAGGACGAGATGTTTcgtgttttattttttgtttaataatt
ttatgtttttgtgaTTTCCTATAAGGTTTCTGGAAAATTTTTCGATGTTT
TAAATACTCAAATTTTTCTCCATGAGGAAAGATATTTAcgaaatagaaaa
aagaaattcgaaaaatattattaaagtTTATGCCTTGACTCAACTCAAGC
AATGGCAACGTTAACAATGGTAAATCCTCATATGACGTCACGACGTGGaa
aaaatcgtcaattttttcAGGCACCATTTagctttattttaagaaaatag
aaaaagaaaatatttgtttttatttactgGAAATAGTATCCTTGTAAAAT
TGtattaaaattattattataaatgttcatttcttttttataattattat
atACACCATTTTTACTAATGCTGAATACATTTGAAAACGatttaaaataa
agaaatataaattgacaaaagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001526XLOC_001526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002799-exon-sc0000023-1491911889:185327..185404TCONS_00002799-exon-sc0000023-1491911889:185327..185404Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:185327..185404TCONS_00002799-exon-sc0000023-1510915933:185327..185404Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:185327..185404TCONS_00002799-exon-sc0000023-1575043694:185327..185404Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:189708..189765TCONS_00002799-exon-sc0000023-1491911889:189708..189765Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:189708..189765TCONS_00002799-exon-sc0000023-1510915933:189708..189765Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:189708..189765TCONS_00002799-exon-sc0000023-1575043694:189708..189765Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:192160..192207TCONS_00002799-exon-sc0000023-1491911889:192160..192207Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:192160..192207TCONS_00002799-exon-sc0000023-1510915933:192160..192207Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:192160..192207TCONS_00002799-exon-sc0000023-1575043694:192160..192207Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:192472..192533TCONS_00002799-exon-sc0000023-1491911889:192472..192533Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:192472..192533TCONS_00002799-exon-sc0000023-1510915933:192472..192533Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:192472..192533TCONS_00002799-exon-sc0000023-1575043694:192472..192533Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:192666..192750TCONS_00002799-exon-sc0000023-1491911889:192666..192750Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:192666..192750TCONS_00002799-exon-sc0000023-1510915933:192666..192750Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:192666..192750TCONS_00002799-exon-sc0000023-1575043694:192666..192750Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:193077..193128TCONS_00002799-exon-sc0000023-1491911889:193077..193128Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:193077..193128TCONS_00002799-exon-sc0000023-1510915933:193077..193128Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:193077..193128TCONS_00002799-exon-sc0000023-1575043694:193077..193128Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:194323..194513TCONS_00002799-exon-sc0000023-1491911889:194323..194513Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:194323..194513TCONS_00002799-exon-sc0000023-1510915933:194323..194513Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:194323..194513TCONS_00002799-exon-sc0000023-1575043694:194323..194513Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:194881..194948TCONS_00002799-exon-sc0000023-1491911889:194881..194948Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:194881..194948TCONS_00002799-exon-sc0000023-1510915933:194881..194948Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:194881..194948TCONS_00002799-exon-sc0000023-1575043694:194881..194948Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:195216..195311TCONS_00002799-exon-sc0000023-1491911889:195216..195311Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:195216..195311TCONS_00002799-exon-sc0000023-1510915933:195216..195311Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:195216..195311TCONS_00002799-exon-sc0000023-1575043694:195216..195311Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:195536..195554TCONS_00002799-exon-sc0000023-1491911889:195536..195554Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:195536..195554TCONS_00002799-exon-sc0000023-1510915933:195536..195554Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:195536..195554TCONS_00002799-exon-sc0000023-1575043694:195536..195554Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:195919..196071TCONS_00002799-exon-sc0000023-1491911889:195919..196071Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:195919..196071TCONS_00002799-exon-sc0000023-1510915933:195919..196071Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:195919..196071TCONS_00002799-exon-sc0000023-1575043694:195919..196071Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:197053..197106TCONS_00002799-exon-sc0000023-1491911889:197053..197106Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:197053..197106TCONS_00002799-exon-sc0000023-1510915933:197053..197106Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:197053..197106TCONS_00002799-exon-sc0000023-1575043694:197053..197106Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1491911889:199113..200099TCONS_00002799-exon-sc0000023-1491911889:199113..200099Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1510915933:199113..200099TCONS_00002799-exon-sc0000023-1510915933:199113..200099Clytia hemisphaericaexon
TCONS_00002799-exon-sc0000023-1575043694:199113..200099TCONS_00002799-exon-sc0000023-1575043694:199113..200099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:185327..200099 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.92667	6.39993	47.5707	52.3067	0.0105072	7.47751e-06	0.062443	1.3752	15.5764	14.5915	11.4075	11.939	8.28014	5.6552	6.40027	8.82995	6.27583	6.07434	6.99978	7.41336	6.77812	9.86586	7.0072	11.7011	1.20927	0	6.56205	4.62675	9.1294	8.67696
Blast
[Close]
BLAST of TCONS_00002799 vs. Swiss-Prot (Human)
Match: CEP41 (Centrosomal protein of 41 kDa OS=Homo sapiens GN=CEP41 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.415e-56
Identity = 122/313 (38.98%), Postives = 189/313 (60.38%), Query Frame = 1 
Query:   97 NKKFEHVKAVVDTGSSVSNYMSKIEDLRKNYRFRKDELFKRMKISTFSQLVLQVA----EVVNLEMERISELDENSPRSLLPEQE--EQTDG--------------------GGTDRSCLLDVIRGVGELSTSGXXXXXXDTVESEEKEQHHHHREIIAXXXXXXXXXXXXIRDSDAFEEGHIIGAINYPSAMLNRTVNYLSKEICAFKNKPGKIIIVYDDDEKLAPQVATSLLQKDVENVIMLSGGMKVLHKKFPSCFITGTVPSTC---FSPKTDRK-GKLKPPPKVISNIGVEW-YTPELLESIQEHLDE 942
            N +++H+K+ +DTG+S++ Y  K+E+++KNYR++KDELFKR+K++TF+QL++QVA    + + +  E I  L++N   +  P+ E   +T+G                    G + RS L  VI GVGEL          D  +   K+   H ++         P+LLLD+RD D++++ HI+GA +YP A L+RT+N  S +I  +KN  GKIII+YDDDE+LA Q AT++ ++  EN+ MLSGG+KVL +KFP   ITG++P++C     P + RK    K PP    N   +W +TPE L+ I+ +L+E
Sbjct:   20 NPRYQHIKSRLDTGNSMTKYTEKLEEIKKNYRYKKDELFKRLKVTTFAQLIIQVASLSDQTLEVTAEEIQRLEDNDSAASDPDAETTARTNGKGNPGEQSPSPEQFINNAGAGDSSRSTLQSVISGVGEL----------DLDKGPVKKAEPHTKD---KPYPDCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSNDILEYKNAHGKIIILYDDDERLASQAATTMCERGFENLFMLSGGLKVLAQKFPEGLITGSLPASCQQALPPGSARKRSSPKGPPLPAEN---KWRFTPEDLKKIEYYLEE 316
The following BLAST results are available for this feature:
BLAST of TCONS_00002799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CEP411.415e-5638.98Centrosomal protein of 41 kDa OS=Homo sapiens GN=C... [more]
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