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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002819 ID=TCONS_00002819|Name=TCONS_00002819|organism=Clytia hemisphaerica|type=transcript|length=2221bp CCCCTTTTCGTTAGATcttgtttcaaaaagtttgtaatGAGAAATCAACC CTTAGTTGCCTTTTCATAAATGGAGCAGTATGGAGCTGGCCTAGTAACTC AGATGAGAGATCGAAAAGAATTCTTTTTCTATGCATAATCATAAGATTAA GATCTCACTATGTGAGCCAGCCCGGCAACTGGACCAGCCAGTAAGTTGGC CATCAACCGGCTTCCGGTTTCCGGTTAGAAATTGTtcacattttttaatt tctacTCAATAGGAACACCAGTAAAGCAGGAATCGCTATTGATGACTGCA CTTTCCACCAATGTGTCAAACTTAGTAAATTTGAAAGTGAACGAAGTATA AGTTTCATTCCTCCAGATGGCGAATATGAACTCATGAGATATCGAACGAC AAAAGACATCAGTCTACCATTCCGTGTTATTCCGCTGGTACGGGAAGTAG CAAGAACGAAAATGGAAGTCAAAGTTGTCCTCAAATCGCATTACAAACCA TCTATATTAGGTCAAAAGATTGAGATTCGAATTCCGACACCACCATCGAC AGCAGGTGTGCAAGTGATTTGCATGAAAGGAAAAGCCAAATACAAAGCCT CCGAAAATGCCATCGTTTGGAAAATTAAACGAATGGCTGGAATGAAAGAA TCTCAAATTAGTGCAGAAATCGAATTACTACCGACACGAGACACCAAGAA ATGGACTAGACCTCCAATTTCTTTGAACTTCGAGGTCCCTTTCTCATGTT CTGGCTTGAAGGTACGCTACTTGAAGGTGTTCGAATCGAAATTGAATTAC AGTGATCATGATGTTATCAAGTGGGTCCGATACATCTCTAAGAGTGGTTT ATACGAAACCAGATGCTAGCATAGTCATTAGAAACGACATTCGATTACGT CATCACATGTGACTTTTTTACGGTATAAACGAacaaatttttgacgttct caCTTGATTTATGGGGGaacaatttttttgctgtttataATCTGATGAAA CAAGTATATATTTTACCGTCCTCTCTGACAGCCATCattctaaaattaat tttgatttccaaTCAATATTATGGGAGCCTCTTTTAAGTAGAAATTGAAC ATGGTTCATTTTTAAGCTTCTCTAGCAGATAACTATATGGCCATCATTTG ATCGTTTAATTTAAATTGTCTATTAGGGTTTTGTATTTATTTCCTATTCC TCTTCGCCTTTGCCTCAAATTCCTTaaatttgtcattctttttttgttta cacgataaaatgttttttattcgTATAACCCGATGAAATTTCCTTTCGTC TGTTTCGACACGAAGAAATACTTGTTAGGTTTCtagtaaaatcaatttta ttctaTTTCTTAGTAAACTTGTACTACCTTATTCCCAAAATCTTCTGTAT GATTCTGAATCTTAtttgtgttgttgttttttttctaattaaaTAATTTG TGTAGAATTATTATATGGTAATTTTTTAcgttactttctttttatttgtt tgtttgtttgtaattATGCTTTCTATTTAgaacttaaaataattttgaag gGCCTACTACTGTTGTACTCCTTACGTCAAAGATTACTTCAATCgatttt caacaaaacaaaaaatgactCTTTTTATTTCCAGCTAAGCCTTCGCCTGA GCATTTTTTTGTTACGAAAAAATCATCGTCGCAACGGCGATAGATGTCCT GATAATTATTCGAATTATTCTATTATTTTTGGGCTATATGTATAAGTCGC CACATTTCGACATGGATAGATTTAAGAGCAATCACATGGCTGCTCTAAAG GAAGGAGATATCACGTAACTTAGATTAGAACTCCTTCTTAACGAGGATAA GTTTTAAAATTctgttcaaaaagttctttttatttgctataatttatttc attttgacaatatttacaaaaattctaatcataatattttgaatcTTTCA AATGTTGTAGCCACTACACTAAGATTTTAACATCGTGAGAAATTctgtag aaaaaagaaaaaggaaaatattaaaGACGACGCTTTCAGTTATGCGATAA GAGCTCTATACATCAGGGGTCCAATATTATCATTTTTCATAATTACTTTT CTATTTATTGTCGGTTACATTTTCACACCAGAACAGAGTATTCCTGCTTA GCAGAACAACGGGTGACAGAGAACAAGATTTTGCTTCCCATCATATTCTA TGGTATACAATCATATAAAGG Run BLAST on NCBI protein sequence of TCONS_00002819-protein >TCONS_00002819-protein ID=TCONS_00002819-protein|Name=TCONS_00002819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MRYRTTKDISLPFRVIPLVREVARTKMEVKVVLKSHYKPSILGQKIEIRI PTPPSTAGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLP TRDTKKWTRPPISLNFEVPFSCSGLKVRYLKVFESKLNYSDHDVIKWVRY ISKSGLYETRC Run BLAST on NCBI transcript from alignment at sc0000023:670663..674198+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002819 ID=TCONS_00002819|Name=TCONS_00002819|organism=Clytia hemisphaerica|type=transcript|length=3536bp|location=Sequence derived from alignment at sc0000023:670663..674198+ (Clytia hemisphaerica) CCCCTTTTCGTTAGATcttgtttcaaaaagtttgtaatGAGAAATCAACC
CTTAGTTGCCTTTTCATAAATGGAGCAGTATGGAGCTGGCCTAGTAACTC
AGATGAGAGATCGAAAAGAATTCTTTTTCTATGCATAATCATAAGATTAA
GATCTCACTATGTGAGCCAGCCCGGCAACTGGACCAGCCAGTAAGTTGGC
CATCAACCGGCTTCCGGTTTCCGGTTAGAAATTGTtcacattttttaatt
tctacTCAATAGGAACACCAGTAAAGCAGGAATCGCTATTGATGACTGCA
CTTTCCACCAATGTGTCAAACTTAGTAAATTTGAAAGTGAACGAAGTATA
AGTTTCATTCCTCCAGATGGCGAATATGAACTCATGAGGTTGGTTTACTA
ATAGGCCTTATCGGATTCTTtgagcgatgcattgtgggattgtttcgggg
gtattacaatagaattcccttgaggaatcaaaaactccgataagatctat
ttttTAATACCCTTTGTATTTATTCTACTGAGTCTGagtctttaaaatat
ttttaacgtgattttcgaatttttgtgaTTGTAAATCTGCCTAATGTCTA
AAAGTCGTGttagaagaatttttcagtgaCTAGCATTACAAACTTATTTT
GTATGATCTTGTCGGACTATTTAAAAGCATTTCATTTCTTCCATTTTccc
agttttctttttttttgtgagGTACTCACAATGTTTTCAGTTGTTCAAAA
CAAATAACTTGTCGTATATTTAGATATCGAACGACAAAAGACATCAGTCT
ACCATTCCGTGTTATTCCGCTGGTACGGGAAGTAGCAAGAACGAAAATGG
AAGTCAAAGTTGTCCTCAAATCGCATTACAAACCATCTATATTAGGTCAA
AAGATTGAGGTATGTAAAACTAATTCTTAGTCCAATAAAACTTGACCAAT
TCGAAGTTCGGTTGCTTGATATTGCTTTATTGGATAGAACTTGATTGTTA
AATAGAACAGATGTAATTTTTTGACTAAGTTTATTTTTGACCCATGTCAC
TGCAAATGATGATTAAAAAATTCTTTATGCTTTAGTTTCAAAAGATATAT
CTTGTTTTTGCCAACTCATTTAAACATTCACCTAATGACTTGCTATTTAG
ATTCGAATTCCGACACCACCATCGACAGCAGGTGTGCAAGTGATTTGCAT
GAAAGGAAAAGCCAAATACAAAGCCTCCGAAAATGCCATCGTTTGGAAGT
AAGTCCATCtaaattaaagttttttatgTTGGCCAATAAACGACTGATAC
GCTTCAAAAGAATTTATTCCCTCGTGTTGCTTGTAGATTAAATTAAAAAT
CTCCAACGGATTTTCGATTTGTGTCACAAGCCAAAATTGTGTAAAAGAAA
CTGTATTTAGTTGAGATGGTTCGAAGATCgataaattttgtttgatatgt
tttttttaagttttattgtAATTAATTGGTGGTTAAAATGTGCTATTGCA
TCAacatgacaattttatgtactGGTCAAGtgtaaaatagatttttacta
TTGATTAATTACAATGTATTTTAAATACTCTACTTTTAGAATTAAACGAA
TGGCTGGAATGAAAGAATCTCAAATTAGTGCAGAAATCGAATTACTACCG
ACACGAGACACCAAGAAATGGACTAGACCTCCAATTTCTTTGAACTTCGA
GGTAAATAGCAGAGAATTGGAATAGAGATGCTTTGCTTTAGACCCCGCCC
ACTTTCATCACAAGAGAACTTACCATCTCAAgcacatattttgaaaaaat
ctttcttttttccctGCCTTATGTGCTAATTTCAATACGTGTTAAAACGG
AAGTATAAACTCTCTATCTAGCCTAGGACCTCAGATTTTTCCGTATAGCT
TGAAAGGCTGAATCAGAAGCTCTACCCGGAGAGTTAAGATTTTCCTTTAC
AGCATCTCCTCATCAAGTCCCTTGGTCATTTTTTAATTCCGTTTGTTTGA
GAGCTCTATATGCACTCATTGAATGTACAATTATCTCTTTTTCTTGTAGG
TCCCTTTCTCATGTTCTGGCTTGAAGGTACGCTACTTGAAGGTGTTCGAA
TCGAAATTGAATTACAGTGATCATGATGTTATCAAGTGGGTCCGATACAT
CTCTAAGAGTGGTTTATACGAAACCAGATGCTAGCATAGTCATTAGAAAC
GACATTCGATTACGTCATCACATGTGACTTTTTTACGGTATAAACGAaca
aatttttgacgttctcaCTTGATTTATGGGGGaacaatttttttgctgtt
tataATCTGATGAAACAAGTATATATTTTACCGTCCTCTCTGACAGCCAT
CattctaaaattaattttgatttccaaTCAATATTATGGGAGCCTCTTTT
AAGTAGAAATTGAACATGGTTCATTTTTAAGCTTCTCTAGCAGATAACTA
TATGGCCATCATTTGATCGTTTAATTTAAATTGTCTATTAGGGTTTTGTA
TTTATTTCCTATTCCTCTTCGCCTTTGCCTCAAATTCCTTaaatttgtca
ttctttttttgtttacacgataaaatgttttttattcgTATAACCCGATG
AAATTTCCTTTCGTCTGTTTCGACACGAAGAAATACTTGTTAGGTTTCta
gtaaaatcaattttattctaTTTCTTAGTAAACTTGTACTACCTTATTCC
CAAAATCTTCTGTATGATTCTGAATCTTAtttgtgttgttgttttttttc
taattaaaTAATTTGTGTAGAATTATTATATGGTAATTTTTTAcgttact
ttctttttatttgtttgtttgtttgtaattATGCTTTCTATTTAgaactt
aaaataattttgaaggGCCTACTACTGTTGTACTCCTTACGTCAAAGATT
ACTTCAATCgattttcaacaaaacaaaaaatgactCTTTTTATTTCCAGC
TAAGCCTTCGCCTGAGCATTTTTTTGTTACGAAAAAATCATCGTCGCAAC
GGCGATAGATGTCCTGATAATTATTCGAATTATTCTATTATTTTTGGGCT
ATATGTATAAGTCGCCACATTTCGACATGGATAGATTTAAGAGCAATCAC
ATGGCTGCTCTAAAGGAAGGAGATATCACGTAACTTAGATTAGAACTCCT
TCTTAACGAGGATAAGTTTTAAAATTctgttcaaaaagttctttttattt
gctataatttatttcattttgacaatatttacaaaaattctaatcataat
attttgaatcTTTCAAATGTTGTAGCCACTACACTAAGATTTTAACATCG
TGAGAAATTctgtagaaaaaagaaaaaggaaaatattaaaGACGACGCTT
TCAGTTATGCGATAAGAGCTCTATACATCAGGGGTCCAATATTATCATTT
TTCATAATTACTTTTCTATTTATTGTCGGTTACATTTTCACACCAGAACA
GAGTATTCCTGCTTAGCAGAACAACGGGTGACAGAGAACAAGATTTTGCT
TCCCATCATATTCTATGGTATACAATCATATAAAGG Coding sequence (CDS) from alignment at sc0000023:670663..674198+ >TCONS_00002819 ID=TCONS_00002819|Name=TCONS_00002819|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0000023:670663..674198+ (Clytia hemisphaerica) ATGAGATATCGAACGACAAAAGACATCAGTCTACCATTCCGTGTTATTCC GCTGGTACGGGAAGTAGCAAGAACGAAAATGGAAGTCAAAGTTGTCCTCA AATCGCATTACAAACCATCTATATTAGGTCAAAAGATTGAGATTCGAATT CCGACACCACCATCGACAGCAGGTGTGCAAGTGATTTGCATGAAAGGAAA AGCCAAATACAAAGCCTCCGAAAATGCCATCGTTTGGAAAATTAAACGAA TGGCTGGAATGAAAGAATCTCAAATTAGTGCAGAAATCGAATTACTACCG ACACGAGACACCAAGAAATGGACTAGACCTCCAATTTCTTTGAACTTCGA GGTCCCTTTCTCATGTTCTGGCTTGAAGGTACGCTACTTGAAGGTGTTCG AATCGAAATTGAATTACAGTGATCATGATGTTATCAAGTGGGTCCGATAC ATCTCTAAGAGTGGTTTATACGAAACCAGATGCTAGATGAGATATCGAAC GACAAAAGACATCAGTCTACCATTCCGTGTTATTCCGCTGGTACGGGAAG TAGCAAGAACGAAAATGGAAGTCAAAGTTGTCCTCAAATCGCATTACAAA CCATCTATATTAGGTCAAAAGATTGAGATTCGAATTCCGACACCACCATC GACAGCAGGTGTGCAAGTGATTTGCATGAAAGGAAAAGCCAAATACAAAG CCTCCGAAAATGCCATCGTTTGGAAAATTAAACGAATGGCTGGAATGAAA GAATCTCAAATTAGTGCAGAAATCGAATTACTACCGACACGAGACACCAA GAAATGGACTAGACCTCCAATTTCTTTGAACTTCGAGGTCCCTTTCTCAT GTTCTGGCTTGAAGGTACGCTACTTGAAGGTGTTCGAATCGAAATTGAAT TACAGTGATCATGATGTTATCAAGTGGGTCCGATACATCTCTAAGAGTGG TTTATACGAAACCAGATGCTAGATGAGATATCGAACGACAAAAGACATCA GTCTACCATTCCGTGTTATTCCGCTGGTACGGGAAGTAGCAAGAACGAAA ATGGAAGTCAAAGTTGTCCTCAAATCGCATTACAAACCATCTATATTAGG TCAAAAGATTGAGATTCGAATTCCGACACCACCATCGACAGCAGGTGTGC AAGTGATTTGCATGAAAGGAAAAGCCAAATACAAAGCCTCCGAAAATGCC ATCGTTTGGAAAATTAAACGAATGGCTGGAATGAAAGAATCTCAAATTAG TGCAGAAATCGAATTACTACCGACACGAGACACCAAGAAATGGACTAGAC CTCCAATTTCTTTGAACTTCGAGGTCCCTTTCTCATGTTCTGGCTTGAAG GTACGCTACTTGAAGGTGTTCGAATCGAAATTGAATTACAGTGATCATGA TGTTATCAAGTGGGTCCGATACATCTCTAAGAGTGGTTTATACGAAACCA GATGCTAGATGAGATATCGAACGACAAAAGACATCAGTCTACCATTCCGT GTTATTCCGCTGGTACGGGAAGTAGCAAGAACGAAAATGGAAGTCAAAGT TGTCCTCAAATCGCATTACAAACCATCTATATTAGGTCAAAAGATTGAGA TTCGAATTCCGACACCACCATCGACAGCAGGTGTGCAAGTGATTTGCATG AAAGGAAAAGCCAAATACAAAGCCTCCGAAAATGCCATCGTTTGGAAAAT TAAACGAATGGCTGGAATGAAAGAATCTCAAATTAGTGCAGAAATCGAAT TACTACCGACACGAGACACCAAGAAATGGACTAGACCTCCAATTTCTTTG AACTTCGAGGTCCCTTTCTCATGTTCTGGCTTGAAGGTACGCTACTTGAA GGTGTTCGAATCGAAATTGAATTACAGTGATCATGATGTTATCAAGTGGG TCCGATACATCTCTAAGAGTGGTTTATACGAAACCAGATGCTAGATGAGA TATCGAACGACAAAAGACATCAGTCTACCATTCCGTGTTATTCCGCTGGT ACGGGAAGTAGCAAGAACGAAAATGGAAGTCAAAGTTGTCCTCAAATCGC ATTACAAACCATCTATATTAGGTCAAAAGATTGAGATTCGAATTCCGACA CCACCATCGACAGCAGGTGTGCAAGTGATTTGCATGAAAGGAAAAGCCAA ATACAAAGCCTCCGAAAATGCCATCGTTTGGAAAATTAAACGAATGGCTG GAATGAAAGAATCTCAAATTAGTGCAGAAATCGAATTACTACCGACACGA GACACCAAGAAATGGACTAGACCTCCAATTTCTTTGAACTTCGAGGTCCC TTTCTCATGTTCTGGCTTGAAGGTACGCTACTTGAAGGTGTTCGAATCGA AATTGAATTACAGTGATCATGATGTTATCAAGTGGGTCCGATACATCTCT AAGAGTGGTTTATACGAAACCAGATGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002819-exon-sc0000023-1491911889:670663..671050 | TCONS_00002819-exon-sc0000023-1491911889:670663..671050 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1510915933:670663..671050 | TCONS_00002819-exon-sc0000023-1510915933:670663..671050 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1575043694:670663..671050 | TCONS_00002819-exon-sc0000023-1575043694:670663..671050 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1491911889:671436..671571 | TCONS_00002819-exon-sc0000023-1491911889:671436..671571 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1510915933:671436..671571 | TCONS_00002819-exon-sc0000023-1510915933:671436..671571 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1575043694:671436..671571 | TCONS_00002819-exon-sc0000023-1575043694:671436..671571 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1491911889:671813..671910 | TCONS_00002819-exon-sc0000023-1491911889:671813..671910 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1510915933:671813..671910 | TCONS_00002819-exon-sc0000023-1510915933:671813..671910 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1575043694:671813..671910 | TCONS_00002819-exon-sc0000023-1575043694:671813..671910 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1491911889:672252..672363 | TCONS_00002819-exon-sc0000023-1491911889:672252..672363 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1510915933:672252..672363 | TCONS_00002819-exon-sc0000023-1510915933:672252..672363 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1575043694:672252..672363 | TCONS_00002819-exon-sc0000023-1575043694:672252..672363 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1491911889:672712..674198 | TCONS_00002819-exon-sc0000023-1491911889:672712..674198 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1510915933:672712..674198 | TCONS_00002819-exon-sc0000023-1510915933:672712..674198 | Clytia hemisphaerica | exon |
TCONS_00002819-exon-sc0000023-1575043694:672712..674198 | TCONS_00002819-exon-sc0000023-1575043694:672712..674198 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000023 | supercontig | sc0000023:670663..674198 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0016192 | vesicle-mediated transport |
GO:0006886 | intracellular protein transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0030131 | clathrin adaptor complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006886 |
intracellular protein transport |
biological_process |
GO:0016192 |
vesicle-mediated transport |
cellular_component |
GO:0030131 |
clathrin adaptor complex |
Blast
BLAST of TCONS_00002819 vs. Swiss-Prot (Human)
Match: AP2M1 (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2) HSP 1 Score: 367.081 bits (941), Expect = 1.475e-118 Identity = 174/203 (85.71%), Postives = 190/203 (93.60%), Query Frame = 3
Query: 267 TSKAG---IAIDDCTFHQCVKLSKFESERSISFIPPDGEYELMRYRTTKDISLPFRVIPLVREVARTKMEVKVVLKSHYKPSILGQKIEIRIPTPPSTAGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTRDTKKWTRPPISLNFEVPFSCSGLKVRYLKVFESKLNYSDHDVIKWVRYISKSGLYETRC 866
TSK+G IAIDDCTFHQCV+LSKF+SERSISFIPPDGE+ELMRYRTTKDI LPFRVIPLVREV RTK+EVKVV+KS++KPS+L QKIE+RIPTP +T+GVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT D KKW RPPIS+NFEVPF+ SGLKVRYLKVFE KLNYSDHDVIKWVRYI +SG+YETRC
Sbjct: 233 TSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435
The following BLAST results are available for this feature:
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