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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002829 ID=TCONS_00002829|Name=TCONS_00002829|organism=Clytia hemisphaerica|type=transcript|length=2111bpRun BLAST on NCBI protein sequence of TCONS_00002829-protein >TCONS_00002829-protein ID=TCONS_00002829-protein|Name=TCONS_00002829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=624bp MARNTPRFYAFLVALGVVCFCIGILAGFYAGKNRYESDGEVSVSPSKSSRRun BLAST on NCBI transcript from alignment at sc0000023:806892..819716+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002829 ID=TCONS_00002829|Name=TCONS_00002829|organism=Clytia hemisphaerica|type=transcript|length=12825bp|location=Sequence derived from alignment at sc0000023:806892..819716+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:806892..819716+ >TCONS_00002829 ID=TCONS_00002829|Name=TCONS_00002829|organism=Clytia hemisphaerica|type=CDS|length=26208bp|location=Sequence derived from alignment at sc0000023:806892..819716+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002829 vs. Swiss-Prot (Human)
Match: NALD2 (N-acetylated-alpha-linked acidic dipeptidase 2 OS=Homo sapiens GN=NAALAD2 PE=1 SV=1) HSP 1 Score: 347.051 bits (889), Expect = 1.411e-107 Identity = 220/621 (35.43%), Postives = 327/621 (52.66%), Query Frame = 2
Query: 239 MARNTPRFYAFL-VALGVVCFCIGILAGFYAGKNRYEXXXXXXXXXXXXXXXDAEREEFYKSVFQEMKADNIRSNLKNYTALPHPPGLAQNEKLGNQIADEWGKH-MDKIEKFKYNIYLSYPEAPGE--ITLHQDNGKNFDKKKLVINNEPSFDESEKNNDKLLYPFNAFSGRGTVTAEIVYGNYGLDKDFDTL-KNAGIDVEGKIMIFRYGKTARSRKVERSEARKAVGVIIFTDPSDHTV-QGEEYPKGWMLNRYGVQRGTVNRL--PGDALSIGYPSKDNYFRKDESKYSGNPAIPSQPISYSTAYEILQYMKLNDNDTALP-SGFQGGLNFTYPLTSG-----KGRNVTLNVSTILETKATYTICGTIFGQKEPDRYVMLGNHRDGWTYGACDPSSGTAVMSEIVRSLGAQKKKGWRPQRSIMTCSWGAEEPGIQGSTEWADENHKFLTNNVAAYLNVDMAVEGNFTVRMKVLDYLADGILKMSKLIEAPSD--SSVTLYEDWLAKSKIWRNNTSLTKPYFVAATSGSDYKALWHTYGTPIADFRYIFDKVKYKQLPQNPHYHTAYESFGWMDKKLDPGFIHHLAIGRLWAGHLLLIAESDILPYDLVQFTEQLQSY 2053
MA + R Y ++ +A + F +G + G++ + + + + EMKA+NI+S L+++T LPH G QN L +I +W K +D + Y++ LSYP I++ ++ K + EP D E N ++ P+NAFS +G ++VY NY +DF L + GI+ GKI+I RYGK R KV+ + A+G+I+++DP+D+ + + YPKGW L QRG V L GD L+ GYP+K+ FR D + G P IP PI Y+ A +L+Y+ A P ++G LN +Y + G R V ++V I + Y + GTI G EPDRYV+LG HRD W +GA DP+SG AV+ EI RS G KGWRP+R+I+ SW AEE G+ GSTEWA+EN K L AY+N D ++EGN+T+R+ L + K++K I +P D S +LYE WL K N P SGSD++A + G RY +K K + P YHT YE+F ++K DP F L++ +L + + +S I+P+++ + E L++Y
Sbjct: 1 MAESRGRLYLWMCLAAALASFLMGFMVGWFIKPLKETTTSVRY------------HQSIRWKLVSEMKAENIKSFLRSFTKLPHLAGTEQNFLLAKKIQTQWKKFGLDSAKLVHYDVLLSYPNETNANYISIVDEHETEIFKTSYL---EPPPDGYE-NVTNIVPPYNAFSAQGMPEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYL----GGIAPPDKSWKGALNVSYSIGPGFTGSDSFRKVRMHVYNINKITRIYNVVGTIRGSVEPDRYVILGGHRDSWVFGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPENK---NLPRINKLGSGSDFEAYFQRLGIASGRARYTKNK-KTDKYSSYPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVYELVDSKIIPFNIQDYAEALKNY 597 The following BLAST results are available for this feature:
BLAST of TCONS_00002829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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