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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002838 ID=TCONS_00002838|Name=TCONS_00002838|organism=Clytia hemisphaerica|type=transcript|length=2205bpRun BLAST on NCBI protein sequence of TCONS_00002838-protein >TCONS_00002838-protein ID=TCONS_00002838-protein|Name=TCONS_00002838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp MTEIEEKATPTENKYSDDDLGILLKHYYKRLFPTKLYHKWLQYGEGTTTFRun BLAST on NCBI transcript from alignment at sc0000023:892887..909535+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002838 ID=TCONS_00002838|Name=TCONS_00002838|organism=Clytia hemisphaerica|type=transcript|length=16649bp|location=Sequence derived from alignment at sc0000023:892887..909535+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:892887..909535+ >TCONS_00002838 ID=TCONS_00002838|Name=TCONS_00002838|organism=Clytia hemisphaerica|type=CDS|length=16575bp|location=Sequence derived from alignment at sc0000023:892887..909535+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002838 vs. Swiss-Prot (Human)
Match: PRI1 (DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1) HSP 1 Score: 396.356 bits (1017), Expect = 4.714e-130 Identity = 200/412 (48.54%), Postives = 275/412 (66.75%), Query Frame = 1
Query: 178 DLGILLKHYYKRLFPTKLYHKWLQYGEGTTT-FENREFSFTLKDDIYIRYMSFGDASDLDKELQKRVPYKIDIGAVYNHKPKDNKTLQAGVFKPLEKELVFDIDMTDYDDVRTCCSGAAICKKCWPFMNLAIKIIDKVLSDDFGFKHRLWVYSGRRGVHCWVADETARKLTQAGRSAVAEYINVIKGGESQNKKVQFRGTNHELHPSLERAKAHVTKYFNDSYLTDQNILENEEQRELMLKLIPD----------EKTRKTVSEQWEKMGSSASTEELWTYLSQTVEEKHFNKHIADEIMFQYVYPRLDINVSKGLNHLLKSPFCIHPKTGRVCVPINPSKVDEFEPEKVPTISQLMEELDEAKKLSDGNTQDTKDS------KEYMSTSLRDSIVLFKKFVTSLDVQLRGD 1362
+L LLK YY+RLFP Y++WL YG F++REFSFTLKDDIYIRY SF + SDL+KE+QK PYKIDIGAVY+H+P + T++ G F+ EKELVFDIDMTDYDDVR CCS A IC KCW M +AI+IID+ L +DFGFKHRLWVYSGRRGVHCWV DE+ RKL+ A RS + EY++++KGG+ KKV + ++HP + ++ + KYF + L +Q+ILEN+E + +L L+P+ +K+ ++ ++WE + AS + ++ + + EIM QY +PRLDINVSKG+NHLLKSPF +HPKTGR+ VPI+ KVD+F+P VPTIS + ELD + ++ +S ++Y TSL + +F+ F+ +LD +G+
Sbjct: 8 ELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHL---SEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIHDELQQSFQKSHNSL-QRWEHLKKVASRYQ------NNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGE 409 The following BLAST results are available for this feature:
BLAST of TCONS_00002838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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