TCONS_00002839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002839
Unique NameTCONS_00002839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002839 ID=TCONS_00002839|Name=TCONS_00002839|organism=Clytia hemisphaerica|type=transcript|length=2128bp
TTGATTGGATCAAAGAGACACCTTATAAGGTTATGTACATAATTAGAATA
AATTATTCACTTACTTGCCTTTGATTGGTTTTcagttattttattttatc
aattcAAAATTATGCGTTTGACCAAATATGGAGTCTAATTTATTATGAAT
GGCGCGTATTTATGTTCGATTTCAGCCCTTCAATGTTCACAGTCACAAAT
CTTTGAGTTGGTAACCAGTAACTTGTTCGTGTTAAAAAACCCTAAACATC
TCCACAATGGCTGATCAACTGACTGAAGAACAAATTGCTGAATTCAAAGA
AGCTTTCTCCCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAG
AATTGGGAACTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAA
CTCCAAGACATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGA
CTTTCCAGAATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATT
CTgaagaagaaatcaaagaagCTTTCAGAGTTTTCGATAAAGACGGCAAT
GGTTTCATCAGTGCTGCTGAATTACGACATGTCATGACCAACTTAGGAGA
AAAACTTACAGATGAAGAGGTCGACGAAATGATCCGTGAAGCTGATATTG
ATGGAGACGGTCAAGTAAACTATGAAGAATTCGTCAAGATGATGATGTCT
AAGTAAATGGGGTTAACCAAGTGATTCTGGTGATACTTGTGTAAATATTG
TAATAAATCTGTTGAATGCATACAGTTCATCCACCAACCACTACGTCATG
ATCAGACACGAACATTGATAGAGAGAATAAAATATCGGGAAAAATGGGAT
AACAAAGTTTTTAACATTTGCCTGTAAAATGGGAGATCTAATATTTATTG
TTcttaaataaattcaaattttaatataatttaCTTGCTCCCTGATTTTG
TGCCTGTTGACCTTGTTCTTCGGGGGTTATTGTGCTAGTCCCCATGCACC
TGCTGTTCTGGTACATTCTTTTTGACAATGTATGAGAAATATCCCAAGGT
TTTAATGACAGGTTAACAAATGGCACACTTTTTTGACCTACCTAGAGGTC
CTTTATTAATCAatccttgtttgtttgttaccagcttttttTATAGGGAT
CAAATTAGGATTTATCTTATTTAAGTGTATTGATCCCTGAAGCTCATTTT
TACATATGAAATTCAAGGCAGCTTCTGGCAGCTTAGTTAATTTCTAATAC
ACCGGTTGCAAAATTGtatcgaaaaagttcacgtgattttatttccATGT
TATCTGTTTTACAACTTATTGTAGGAGGAAGTTTGTCGTATTTTGAGGTC
GATTGTTTTGGTAAAAGCGCTTGTTATaaatttttgctatgctataaAGG
GGTATGGggatcaaaataacttgggtgccgaTTTTTTTCTGACACTTTGT
GATTTTCaaacaaatatgacggtctcaggcaaaaattatagggtcaaaaa
ttaattaattattttaaCTTGAGAGAATAGTTCTGTTCCTGTTCTATATT
TTCGGAAAGCtctataaaaatttaaattagtgatatattgcgagtataga
tgatttcagtacctaactcgagacaTTGAGCAttaaacagctgtttctgg
ctgaaaaataatgtttttaaggGTAAATATGTCATACTTGCAgtacattg
ggctcttccagaaaaaaaccattcatgggggtggaggatatcgTAGATAC
TAAACCCCGAAACGGGTGGGAAACGAAtgcaaacgggtggaaacgagtgg
cgaaacgggtggaaaggaatgaaaaacaactggaaacacatgaaaacgag
tggaaacgagtgcTAGGGGTTCATATCAaactaataaatttttttcaaat
gcttCTTAAAACATTGTTAAAAACAGAACGCTGCTTTGATAACAGAATGG
AAGCGATTTTCTTTTTGGTAGTAAGTAAGCAgcttattttcatttgaaac
caaatccagtatttcagatacttttgtgttttgatgttATATGTTTTTTA
TGGTTGGATTTTTATGACAAAGAAACACGGTTGTTGCTGCAAAGCATATA
TTCTTGATATTTCCTTAGGATGTGAATG
Run BLAST on NCBI

protein sequence of calmodulin

>TCONS_00002839-protein ID=TCONS_00002839-protein|Name=calmodulin|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQ
DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIKEAFRVFDKDGNGF
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMMSK
Run BLAST on NCBI

transcript from alignment at sc0000023:911824..914858+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002839 ID=TCONS_00002839|Name=TCONS_00002839|organism=Clytia hemisphaerica|type=transcript|length=3035bp|location=Sequence derived from alignment at sc0000023:911824..914858+ (Clytia hemisphaerica)
TTGATTGGATCAAAGAGACACCTTATAAGGTTATGTACATAATTAGAATA
AATTATTCACTTACTTGCCTTTGATTGGTTTTcagttattttattttatc
aattcAAAATTATGCGTTTGACCAAATATGGAGTCTAATTTATTATGAAT
GGCGCGTATTTATGTTCGATTTCAGCCCTTCAATGTTCACAGTCACAAAT
CTTTGAGTTGGTAACCAGTAACTTGTTCGTGTTAAAAAACCCTAAACATC
TCCACAATGGTAAGAGTATTAATTTGTCTTAGCTACTTAAgttccaaaat
atttgattgataTTGTGATCATCTCGATTAGTTAACATATTCCATCGCTG
AGTAAAGCTAAAGTTGAAAAGTTGTTATTGACATTTTACAAAGAGTGGAA
AGTTGGTAACGCCCCTTTCTGGACTTCAGTTGTTAAAGACTGATTTTCTC
TTCCATAGGCTGATCAACTGACTGAAGAACAAATCGCTGAATTCAAAGAA
GCTTTCTCCCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGA
ATTGGGAACTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAAC
TCCAAGACATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGAC
TTTCCAGAATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTC
TGAAGNatttcatacccttacagtgcactagctgaactatgaaaaaccta
cccttaagggccgaacgtctggtaggtcatttaccttgagtgcccccccc
ggggttaACATATTCCATCGCTGAGTAAAGCTAAAGTTGAAAAGTTGTTA
TTGACATTTTACAAAGAGTGGAAAGTTGGTAACGCCCCTTTCTGGACTTC
AGTTGTTAAAGACTGATTTTCTCTTCCATAGGCTGATCAACTGACTGAAG
AACAAATTGCTGAATTCAAAGAAGCTTTCTCCCTATTCGACAAAGACGGA
GATGGCACCATCACAACCAAAGAATTGGGAACTGTCATGAGAAGTTTAGG
ACAAAACCCAACTGAAGCTGAACTCCAAGACATGATCAATGAAGTTGATG
CTGACGGTAACGGTACTATTGACTTTCCAGAATTTTTAACCATGATGGCA
CGAAAAATGAAAGACACTGATTCTgaagaagaaatcaaagaagCTTTCAG
AGTTTTCGATAAAGACGGCAATGGTTTCATCAGTGCTGCTGAATTACGAC
ATGTCATGACCAACTTAGGAGAAAAACTTACAGATGAAGAGGTCGACGAA
ATGATCCGTGAAGCTGATATTGATGGAGACGGTCAAGTAAACTATGAAGG
TAAATATATATTCTTTCCTGAAACTCATTTTACTTTGGTGAATTTTCTGG
CATTTGATTTTCTACCATATTGCTCAAATGTAACAACACTCAATACAAAT
ATCTGTGACTGGGCCAGCAATCTTGTATGAAAAGTACTTATTTGTGAAAC
ATGATTACACATGTTCAGGTTTTATGAAATGATATTACCTCACTACTAGC
ATTGACTTAAAATACCTTTCAATTTCCTTTTTAGAATTCGTCAAGATGAT
GATGTCTAAGTAAATGGGGTTAACCAAGTGATTCTGGTGATACTTGTGTA
AATATTGTAATAAATCTGTTGAATGCATACAGTTCATCCACCAACCACTA
CGTCATGATCAGACACGAACATTGATAGAGAGAATAAAATATCGGGAAAA
ATGGGATAACAAAGTTTTTAACATTTGCCTGTAAAATGGGAGATCTAATA
TTTATTGTTcttaaataaattcaaattttaatataatttaCTTGCTCCCT
GATTTTGTGCCTGTTGACCTTGTTCTTCGGGGGTTATTGTGCTAGTCCCC
ATGCACCTGCTGTTCTGGTACATTCTTTTTGACAATGTATGAGAAATATC
CCAAGGTTTTAATGACAGGTTAACAAATGGCACACTTTTTTGACCTACCT
AGAGGTCCTTTATTAATCAatccttgtttgtttgttaccagcttttttTA
TAGGGATCAAATTAGGATTTATCTTATTTAAGTGTATTGATCCCTGAAGC
TCATTTTTACATATGAAATTCAAGGCAGCTTCTGGCAGCTTAGTTAATTT
CTAATACACCGGTTGCAAAATTGtatcgaaaaagttcacgtgattttatt
tccATGTTATCTGTTTTACAACTTATTGTAGGAGGAAGTTTGTCGTATTT
TGAGGTCGATTGTTTTGGTAAAAGCGCTTGTTATaaatttttgctatgct
ataaAGGGGTATGGggatcaaaataacttgggtgccgaTTTTTTTCTGAC
ACTTTGTGATTTTCaaacaaatatgacggtctcaggcaaaaattataggg
tcaaaaattaattaattattttaaCTTGAGAGAATAGTTCTGTTCCTGTT
CTATATTTTCGGAAAGCtctataaaaatttaaattagtgatatattgcga
gtatagatgatttcagtacctaactcgagacaTTGAGCAttaaacagctg
tttctggctgaaaaataatgtttttaaggGTAAATATGTCATACTTGCAg
tacattgggctcttccagaaaaaaaccattcatgggggtggaggatatcg
TAGATACTAAACCCCGAAACGGGTGGGAAACGAAtgcaaacgggtggaaa
cgagtggcgaaacgggtggaaaggaatgaaaaacaactggaaacacatga
aaacgagtggaaacgagtgcTAGGGGTTCATATCAaactaataaattttt
ttcaaatgcttCTTAAAACATTGTTAAAAACAGAACGCTGCTTTGATAAC
AGAATGGAAGCGATTTTCTTTTTGGTAGTAAGTAAGCAgcttattttcat
ttgaaaccaaatccagtatttcagatacttttgtgttttgatgttATATG
TTTTTTATGGTTGGATTTTTATGACAAAGAAACACGGTTGTTGCTGCAAA
GCATATATTCTTGATATTTCCTTAGGATGTGAATG

Coding sequence (CDS) from alignment at sc0000023:911824..914858+

>TCONS_00002839 ID=TCONS_00002839|Name=TCONS_00002839|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000023:911824..914858+ (Clytia hemisphaerica)
ATGGCTGATCAACTGACTGAAGAACAAATTGCTGAATTCAAAGAAGCTTT
CTCCCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGAATTGG
GAACTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAACTCCAA
GACATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGACTTTCC
AGAATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTCTgaag
aagaaatcaaagaagCTTTCAGAGTTTTCGATAAAGACGGCAATGGTTTC
ATCAGTGCTGCTGAATTACGACATGTCATGACCAACTTAGGAGAAAAACT
TACAGATGAAGAGGTCGACGAAATGATCCGTGAAGCTGATATTGATGGAG
ACGGTCAAGTAAACTATGAAGAATTCGTCAAGATGATGATGTCTAAGTAA
ATGGCTGATCAACTGACTGAAGAACAAATTGCTGAATTCAAAGAAGCTTT
CTCCCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGAATTGG
GAACTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAACTCCAA
GACATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGACTTTCC
AGAATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTCTgaag
aagaaatcaaagaagCTTTCAGAGTTTTCGATAAAGACGGCAATGGTTTC
ATCAGTGCTGCTGAATTACGACATGTCATGACCAACTTAGGAGAAAAACT
TACAGATGAAGAGGTCGACGAAATGATCCGTGAAGCTGATATTGATGGAG
ACGGTCAAGTAAACTATGAAGAATTCGTCAAGATGATGATGTCTAAGTAA
ATGGCTGATCAACTGACTGAAGAACAAATTGCTGAATTCAAAGAAGCTTT
CTCCCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGAATTGG
GAACTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAACTCCAA
GACATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGACTTTCC
AGAATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTCTgaag
aagaaatcaaagaagCTTTCAGAGTTTTCGATAAAGACGGCAATGGTTTC
ATCAGTGCTGCTGAATTACGACATGTCATGACCAACTTAGGAGAAAAACT
TACAGATGAAGAGGTCGACGAAATGATCCGTGAAGCTGATATTGATGGAG
ACGGTCAAGTAAACTATGAAGAATTCGTCAAGATGATGATGTCTAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001548XLOC_001548Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
calmodulinTCONS_00002839-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002839-exon-sc0000023-1491911889:911824..912082TCONS_00002839-exon-sc0000023-1491911889:911824..912082Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1510915933:911824..912082TCONS_00002839-exon-sc0000023-1510915933:911824..912082Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1575043694:911824..912082TCONS_00002839-exon-sc0000023-1575043694:911824..912082Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1491911889:912755..913172TCONS_00002839-exon-sc0000023-1491911889:912755..913172Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1510915933:912755..913172TCONS_00002839-exon-sc0000023-1510915933:912755..913172Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1575043694:912755..913172TCONS_00002839-exon-sc0000023-1575043694:912755..913172Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1491911889:913408..914858TCONS_00002839-exon-sc0000023-1491911889:913408..914858Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1510915933:913408..914858TCONS_00002839-exon-sc0000023-1510915933:913408..914858Clytia hemisphaericaexon
TCONS_00002839-exon-sc0000023-1575043694:913408..914858TCONS_00002839-exon-sc0000023-1575043694:913408..914858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:911824..914858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1353.28	1389.37	1693.11	1884.23	1612.01	1269.51	2460.05	2349.86	827.357	658.909	690.035	530.825	673.125	560.604	527.515	590.82	528.359	634.132	803.293	699.367	686.063	609.461	1013.82	925.5	845.199	868.404	844.298	814.32	1100.23	1113.72
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00002839 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 7.605e-94
Identity = 144/149 (96.64%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:  257 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMMSK 703
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI+EAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV+MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of TCONS_00002839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM37.605e-9496.64Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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