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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002898 ID=TCONS_00002898|Name=TCONS_00002898|organism=Clytia hemisphaerica|type=transcript|length=3750bpRun BLAST on NCBI protein sequence of TCONS_00002898-protein >TCONS_00002898-protein ID=TCONS_00002898-protein|Name=TCONS_00002898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1114bp MRLLYVLIVASIAVSFTSASELCKVCQINPCSLVKKSCPPGQQLTPNKCQRun BLAST on NCBI transcript from alignment at sc0000023:936643..957887- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002898 ID=TCONS_00002898|Name=TCONS_00002898|organism=Clytia hemisphaerica|type=transcript|length=21245bp|location=Sequence derived from alignment at sc0000023:936643..957887- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:936643..957887- >TCONS_00002898 ID=TCONS_00002898|Name=TCONS_00002898|organism=Clytia hemisphaerica|type=CDS|length=93660bp|location=Sequence derived from alignment at sc0000023:936643..957887- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002898 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 203.371 bits (516), Expect = 1.166e-52 Identity = 205/634 (32.33%), Postives = 265/634 (41.80%), Query Frame = 1
Query: 1495 CILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCPCKDQCSKTTCGKDRRCFWNTKTCKAECPCAISCANILCIIGSRCEHDPKKCTTKCVCNEICTREYR-PVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACPAVCTKPRKCRPEARCLVDKETCKESCTCR-RGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCS-LGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCP--AVCDAKALCKNVKCNEKIFEFCEVNEKACTARCVCPSVCTKEFRPVCGSDGVTYGNECMMRVQTCITGGRVVKKFDESCESCQN-VCARVDCKPNHACVNLPDKCSA-QCVDTMQCPI-GDPCKGITCGK-----GNKCVRNFASCSYSCQPIVCPKILCVQPACAGNPCPKGQKCIDNFCPSSCVSACEIKRCRK------------PCTREY-------RPTCGSDGKTYSNPCVFSIAVCESDGKLTKKSDGRC 3300
C + PVCGSD TYSN C L A C +I +S GPC +D CS N+ C GS C T C+C C VCGSDG Y EC+L + +C ++ KK DG C A+ R CR V+ T + R CP + PVCG DGVTY NDC++ + L+ G C G + C C + A C+ SR+ R RC C + C +PVC +G+TY ++C A CR Q I KH G C++ C V+C F + C K + C+C +AC ++ PVCG+DGVTY + C L+ C +I G C C ALC +A T RCVCPS C +PVCGSDG TY +ECM+ V C + CE+C + VCA CSA QCV CP P G CG G+ C A+C Q ++ A AG PC + + C S CE + CR+ PC ++ P CGSDG TYS C A CES L + G C
Sbjct: 202 CPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCS----------------------------NVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCR------VNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQG--RDQCPE-PCRFNAVCL--SRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCA--VKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALC-----------------EAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCA------------FGAVCSAGQCV----CPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQ---------IEEARAG-PCEQAE-CGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 2 Score: 138.658 bits (348), Expect = 1.090e-32 Identity = 185/641 (28.86%), Postives = 252/641 (39.31%), Query Frame = 1
Query: 1714 SCANILCIIGSRCEHDPKK-CTTKCVCNEI-CTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKACP---AVCTKPRKCRPEARCLVDKETCKESCTCRRGCPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCS-LGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRA-CQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPAVCDAKALCKNVKCNEKIFEFCEVNEKACTARCVCPSVCTKEFRPVCGSDGVTYGNECMMRVQTCITGGRVVKKFDESCESCQNVCARVDCKPNHA-CVNLPDKCSAQCVDTMQCPIGDPCKGITCGKGNKCVRNFASCSYSCQPIVCPKILCVQPACAGNPCPKGQKCIDNFCPSSCV---SACEIKRCRKPCTREYRPTCGSDGKTYSNPCVFSIAVCESDGKLTKK------------------SDGRCPPN-CRK------------PCTREYR-------PICGSDGKTYSNPCVFSIAVCESGGKLTKKSDGRCPPSCRKPCTREYRPI 3489
+C +LC G+ CE + + CVC + C PVCGSD TYSNECEL +A C I S G C P C+ C A L C +C RG P+ VCG+DG Y +C L C + + K G CD C C N R R + CP PVCG +G TY N+C++ + + K G+C + + C C F +VC+ + + +C C+R C + PVC DG TYD+ C A C+ + I K G C A + C V+C C V K A C C C+ + PVCGSDGVTYG+ C + C G + C+ C C+ CV C ++CV Q P+ C ++C+ + +C++ + + A AG PC + C D C V C RC P P CGSDG TY + C A C ++ + DG C CR+ PC ++ P+CGSDG TYS C A CES L + G +CR P P+
Sbjct: 171 ACRGMLCGFGAVCEPNAEGPGRASCVCKKSPCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGSTCARSADGLTASCLCPATC---RGAPEGT--VCGSDGADYPGECQLLRRACARQENVFKKFDGPCD-----PCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQC-QGRDQCPEP-CRFNAVCLS--RRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCD---QAPSPCLGVQC--AFGATCAV--KNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCV-----CPSECVALAQ-PV---CGSDGHTYPSECMLHVHACTHQ---------ISLHVASAG-PC---ETCGDAVCAFGAVCSAGQCVCPRCEHPPPG---PVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQG----ACRGPTFAPLPPV 761 HSP 3 Score: 137.887 bits (346), Expect = 1.956e-32 Identity = 166/576 (28.82%), Postives = 233/576 (40.45%), Query Frame = 1
Query: 1270 IACPFLLDPVCGSDGKTYDNECLLNAAACRSKRPLNKKHDGPXXXXXX--XXXXXXFGARCVQDPRTCNTKCECPGACILLFKPVCGSDGKTYSNACFLGVANCKSGGKISQVSEGPCP-------------------CKDQC---SKTTCGKD-----RRCFWNTKTCKAECPCAI-------SCANILCIIGSRCEHDPKKCTTKCVCNEICTREYRPVCGSDGKTYSNECELNKASCKSGGSITKKSDGKCPKA----CPAVCTKPRKCRPEA----RCLVDKETCKESCTCRRGCPKI-KRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVF---NSRQCRHRCVCSLGCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNRACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCP-------AVCDAKALCKNVKCNEKIFEF-CEVNEKACTARCVCPSVCTKEFRP--VCGSDGVTYGNECMMRVQTCITGGRV 2823
+ C PVC DG+TYD++C A CR +R + KH GPC +C FGA C + CEC AC L+ PVCGSDG TY +AC L C G +I +GPC C +C ++ CG D C + C + + +C + +C G+ C +CVC PVCGSDG TY + CEL +A+C I + G C +A + + C E + D+++ C C C + PVCG+DGVTY+ +C LK ARCES+ L + +G C G V + A+ + R V GCP + C +G +Y C C + + +C++C+ N FR + D C C C+ G D+ C C K + G+CP A C+A A C E EF E++ +A CVCP + E VCGSDGVTYGNEC ++ C G ++
Sbjct: 419 VTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAV--KNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCS------AGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPTFAPLPPVAPLHCAQTPYGCCQDNITAARGVGLAGCPSACQ--CNPHG-SYGGTCDPATGQCSCRPGVGGL---RCDRCEPGFWN----FRGIVTDGRSGCT-PCSCD------------PQGAVRDD-CEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADA-SAPATCAEMRCEFGARCVEESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQI 961 HSP 4 Score: 136.732 bits (343), Expect = 4.125e-32 Identity = 160/608 (26.32%), Postives = 230/608 (37.83%), Query Frame = 1
Query: 2005 KESCTCRRG-CPKIKRPVCGTDGVTYANDCLLKIARCESKGTLKLKHRGYCDGDCKFSCATVKCAYGAKCVFNSRQCRHRCVCSL---GCPKILKPVCGSNGQTYPNECLLNYAMCRSQGKITKKHDGKCNKCKITCANVRCGFRSVCVDDFKTCKFQCQCNR--------ACQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKC------PAVCDAKALCKNVKCNEKIFEFCEVNEKACTARCVCPSV-CTKEFRPVCGSDGVTYGNECMMRVQTCITGGRVVKKFDESCESCQNVCARVDCKPNHACVNLPDKCSAQCVDTMQCPIGDPCKGITCGKGNKCVRNFASCSYSCQPIVCPKILCVQPACAGNPCPK-GQKCIDNFCPSSCVSACEIKRCRKP--CTREYRPTCGSDGKTYSNPCVFSIAVCESDGKLTKKSDGRCP--------------------PNCRKPCTREYRPICGSDGKTYSNPCVFSIAVCESGGKLTKKSDGRCPPS-------------------CRK------------PCTREYR-------PICGSDGKTYSNPCVFSIAVCESGGKLTKKSDGRC 3588
+ SC C++ CP + PVCG+D TY+N+C L+ A+C + ++L RG C + C+ V C++G+ C ++ C+C G P+ VCGS+G YP EC L C Q + KK DG C+ C+ D ++C+ + R +C APVCG DGVTY+N C + + + K G+C P C A+C + + RC C V C +RPVC DG TY ++C + C + K C+ + C V C C + + +C+ C G+ C +C+ + V K PC + GQ C + E RC P C +P CGSDG TY + C+ + C L S G C P C P P+CGSDG TY + C A C ++ + G C + CR+ PC ++ P+CGSDG TYS C A CES L + G C
Sbjct: 192 RASCVCKKSPCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCG--SRDPCSNVTCSFGSTCARSADGLTASCLCPATCRGAPE--GTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQ-----------GALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGR---------------PRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARK----------GPCDRCGQ------CRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCPRCEHPPPG---PVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGAC 750 HSP 5 Score: 117.857 bits (294), Expect = 2.434e-26 Identity = 134/455 (29.45%), Postives = 184/455 (40.44%), Query Frame = 1
Query: 2401 CANVRCGFRSVCVDDFKT-CKFQCQCNRA-CQEIFAPVCGTDGVTYDNQCTLDIAHCKSKGKITKKSDGKCPAVCDAKALCKNVKCNEKIFEFCEVNEKACTARCVCPSVCTKEFR-PVCGSDGVTYGNECMMRVQTCITGGRVVKKFDESCESCQNVCA------RVDCKPNHACVNL-PDKCSAQCVDTMQCPI-GDPCKGITCGKGNKCVRNFASCSYSCQPIVCPKILCVQPACAG-NPCPKGQKCIDNFCPSSCVSACEIKRC---RKPCTREYRPTCGSDGKTYSNPCVFSIAVCESDGKLTKKSDGRCPP-------------------------NCRKPCTREYRPICGSDGKTYSNPCVFSIAVCESG-------------------GKLTKKSDGRCPPSCRKPCTREYRPICGSDGKTYSNPCVFSIAVCESGGKLTKKSDGRC 3588
C + CGF +VC + + + C C ++ C + APVCG+D TY N+C L A C + +I S G C ++ C NV C+ C + TA C+CP+ C VCGSDG Y EC + + C V KKFD C+ CQ RV+ + + L P+ C A+ Q P+ GD G+T N CV S + + ++ K+ Q C G + CP + C N + C+S RC R C YRP C DG+TY + C A C + K G C C + C+ Y P+CGSDG TY + C C G G L + GRC C C +P+CGSDG TY + C+ + C L S G C
Sbjct: 172 CRGMLCGFGAVCEPNAEGPGRASCVCKKSPCPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPC----GSRDPCSNVTCS--FGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPAR-----QAPVCGD--DGVT--YENDCVMGR---SGAARGLLLQKVRSGQ--CQGRDQCP--EPCRFN---AVCLSRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRC--VCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPC 599 The following BLAST results are available for this feature:
BLAST of TCONS_00002898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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