TCONS_00002900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002900
Unique NameTCONS_00002900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002900 ID=TCONS_00002900|Name=TCONS_00002900|organism=Clytia hemisphaerica|type=transcript|length=1293bp
GCAAAATGTGATAAGGTATGACAGCCAACTCTGTGCctaaaaaatcgcca
ttttgaatATGGAACACGCCGTATCTCTTTTCACGCGGCAGAAGACAGTT
CGAGGAAGCACAAAAGCACGGCGATCAAAGCCTCATCATGTCTAATAGAT
ATGCACGACCACCAAACACATCTTTATACATTAGAAACTTAGGCACTAGC
ACAAGGCCTGAAGATCTCCGACGCATCTTTGCTAATAACTACACAGACAA
GTCCTTGAGAGACCAAGCTTGACATATCTCAATTTCAAACAAGTTGGTTC
TTCAAAGAGaatgttttcaattaaaagatcTCAAGCCAGAGAAAGATATG
TTCTTAAAGTTATGAAATACCAAGATACAGAAAAGACCCAAGGCTCATTT
AAAGACAAGACCTAAGTTCAATAGCTGTTGATATCAAGTCAATATAAGGC
TTCCATTACAGACAACCTACAGATTCCTAATCCTTTAAAGTTCTCTCACA
GATTCAATCTTCATCCCCCGGACAAATGAGAACTCGAGATGGTGACGATG
ACAGATATGGTGGTGGATATCGTGGCGGAGGGAGAAGAAGAAGTCGTAGT
CGATCACCACCCAGGAGGAGACGTAGAAGCCCATCCAGATCCCGTTCACG
CTCGAGATCACGCGGCCGTCGTCGAAGCCCATCTCGTAGTCCGCGTCGAT
CAAAAAGTCGTTCGCGCTCCCGTTCGCCTCGTAAACGTTCTCGCTCGCAC
AGTCCTCGAAAAGTATCCAGAAGCCGTAGCAAGAGTAGGAGCCGTAGCCG
CAGTCGTAGCCCGAGTAGAAGTAGAAGTCGTTCAAAGAGTAGATCACCTC
GCAAATCTCGCTCGAGGTCACCATGAATTGGGAGGGAACAAGAATATAGA
AGAGAGCGAAATATTTATAGACACTCTTTACAGCTGGGCAACGATATGTT
TCGATCACCTATATTTACATCTTTTTGGAATGTAATAATCACGTGGCAAA
TCTCTGAGTAAGGTGTTAAAAATCGAGTACAATCCCACATGATTTTGTAt
atcttttcattttaaaacagcGAGTAGAAATTGTTTTTGTGATGTAGTGT
AAATAAACaacatttttaacaaacttttttaagAACTTATTTTCACTGTA
CTTACCTGTCGAAGGTttacataaattttttttctctctctcacAGATCG
TCTCGCACATGTCCCGAGATAAACATGATCTTGCTTTACCTGGCTATATC
GGGCCCAATTTTCCTGGTGGATTTTAATCAGAAACAAAGTCTT
Run BLAST on NCBI

transcript from alignment at sc0000023:961465..967251-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002900 ID=TCONS_00002900|Name=TCONS_00002900|organism=Clytia hemisphaerica|type=transcript|length=5787bp|location=Sequence derived from alignment at sc0000023:961465..967251- (Clytia hemisphaerica)
GCAAAATGTGATAAGGTATGACAGCCAACTCTGTGCCTAAAAAATCGCCA
TTTTGAATATGGAACACGCCGTATCTCTTTTCACGCGGCAGAAGACAGTT
CGAGGAAGCACAAAAGCACGGCGATCAAAGCCTCATCATGTCTAATAGAT
ATGCACGACCACCAAACACATCTTTATACATTAGAAACTTAGGCACTAGC
ACAAGGTATGATATTTATTCCTTTTAGTAGAAATGTTCCTGTTTACCAAA
GGGCCCAACGAATAGGATAGGATTTGAACGCAAAATGAATGATCTTTGAC
AAGCGACTAGAATAAAGACAAAAATCAAGTGTTACAAGATAACCTCAGCT
AAACGAATATATACAGGCAGTTGGTGTGGTAGACGTACCAGAAAATCCGA
ACAAAATCTCAAAAACACCTGAGCGAGAAACTGAAAATGTAGAAATCCAA
AAATAGGCAATAAATAAGGGGCAACTTCCATATTCAAAGTTGCCACACGT
AGCAGGAAAAGACCATTACTTTTAAAACATACCTACCCACCTCCTTAACG
GCCTTCATAATTTGACCAAAATCTTACCGAAGCTTCCATTCCCGTTAAAA
TCAAAACAAACGGCCAAATTCCATCAATTTTTAAAGGGCTTTTGTTTTTA
AAACTCCTGAGGCAAAAAGTTTTATACTCTAAAACAACCCCTAAAATTGC
TCAGGGAAAGGATTTTGGATAGCGTGCAGTTTGCGTGAATGCATGAATGG
GCATTTTCGGTTGCGTGAATGCGTGAAAATTGAAAAAAAAAATATGCGAA
TGCATGAATTCAGAAAAAAATTGCGTGATTGCCGGAATTGAATTCTTGAA
TCCGATAATTGAAGGAATACTCTACCCCATTGCTACATGCCACACACATC
CAGACGTCCGAGCTCGATAGGATCGATCATCGGAACGGCTCGATGATGGA
TCGATATGTGATCGATGGATCCAGATAGGAGATCGATTGAAGATCGATAC
TCAAGATTTTTTTAAGCTCGTGATTAGTTATCGATTATTTATCGATCTAT
CATAGATCTTTTATCGATCTTATCGACCCTATCGACTCATACTCGATTTA
CAATCGATTAACGATCGATGATGAATCGATATACTTGCTTTGAAATACTA
GCTTGATAATGGATCAAGAAGGATCGATACTCAAGACTTTTTAATGGCTG
AATCTTCAATCGATCTCCTATCCGGATCGTTAAGTAATCCATCGATCACA
TATCGATCAGTCATCGAGCCGTTCCGATGATCGATCCGTCATCGAGCGCG
GACGTCTGGACACATGTATACAATATCTTTGATTCACTCTACTTATAAGA
GCACAGAAACATAGTTTAAAAATGTCCTCATGTTATTAGTTATGTTCTTG
TAAAAAGCTTTAGATCAGACTCAGAAAGAGAGAAAACTTCGTGATTTGTT
TACACGTAAATCGCGATAGTGTAAAGGGTATGAAAAAGTGGTTTCACACA
GTCTGAAGGAATGAAAATTCGTGAAAAGTATGCAAAACTATGTAATTATC
CTCACGAAATATTGTCAAAATAATCTCCACCGTTGAGGTATGATACCATG
ATAACAAGATGTACCTGTGTACTTGTGTTTGAGCATCCGGCTTCAGGTAA
GGTTCTTGGTGAACCACGCCTCTGTGTGATCAATCTGTCGAGAGAAAAAG
AATCTCAGCAGATATTTTTCATGTCAATTANGTAGATTTTCAAATTTTCA
ACTTTTGTACCTTTTCGGAAAGCTCTAAGGCTGTACTTTCAGGATATAAA
AAAGTTTCCATGGAGATATTTGTGAAATTGAGAAAATGACCGCCCAAGTT
CAGCTTTTCACTGATTTTCATTTTTCCCTCGTTTCCAGGCCCCCGTATAT
CAGAGTGAGAGCAGGTGAGAGGTCAAATAAAGATTGGAAATCCAATATTT
GGATTCAGATTTTTTAGTTGTTTCAGGATATGTATGGTTGTAAGTACTTT
AAAGCAATATCTGAAGAGCTATCAGGCTTAGAAAGTACAGGTAAAAACAT
GCGATTTAGGCAGATTTGAGGTTTTTTGCAGTTTCCCACCCCCTAAAGCC
CCTTCTGGGTGAGAAAGGAGTGTCTGTAAGCGCTGCACCTTTTGGTGCAT
AGCTGATGTACTCCATACATAATAACACAATATACTGAAAGAAACTTTCT
CAGATAGCTCTACTTCAAGCAAAATCAAGCTAAAGTTTGAGAAATAATGG
TAGATTACCACCTTTTACCAGATTACCAGATTTTAATGGTCTAAGTAGGG
TTTTGGTGTCCCTCTATATTGATTTTGCTAAAAACTGATGATATTTTTTC
TTAGTTTTCATCTTAATCAGATCAAAATTGGCCTAGTTATTAAAGTTTTA
AATTCTGGTCAGTAAATTACTGGTCTGTAAATTACTGGTCTGTAAATTAC
ATTTTCGTAAATTGGGCATAACTTACCAACCGTTGTTGCTAGAGAGCTGA
AATTTTTTGTGTGTGATCCACCCAAGATATGTGACCTTGTGTCAAAATTT
CAGGAAGATTTGAAGACCCCCATGATCCCACTTTTTCTGATTCTTAGGTG
CATCTGCTCTTAAGGTGTGTGTCCAGGGCTCTTTTGAATTTATCGATAGA
AATGTTTTTGAGGTTTCTGATGCTCTTTGGCATAGAATGAATGCGACTCT
TTCAGTAAACTTATTACGATGGAGAGTCTCTCTCACACAAACTAAAGCCA
TTTTGAACACAGAAGTTTAAACGTATCAACAGATGTACCTTTTGAACATT
TTGTGTACAGAAAGCATTTTTGTTTCTTTGAGTGAACAAAATATTTTTTC
TATAGGGAAAAATTTATAGAAAACTATTTTAGTGTTTTTATTTTTTCGAA
TCGAGAAAATTGAGTGTGTGAATTCACCACATTTACATACCCTGTATCCG
CCCCTGGTCCATAAGAACATTATGGGAGTAATTAGATCAATCGGATGTAA
TGGAACGCCAAATTCCTAAATCCTGGGTTATATTCAATTACAATGTGATT
GTGTTTGACAATTGAATTGCAAAAATGCAGCATAAAAATCTTTTGAAAAG
GGGTGTTTCATTCTATGGGTCTAAAATACTGGTTGCTAGATGCTTCTATT
ACTTTCATATTTTCACTTCTTTCAGGCCTGAAGATCTCCGACGCATCTTT
GCTAAGTATGGACCTATTCGAGATGTTTATATTCCACTAGACTATTATTC
CAGGGAACCAAGAGGGTTTGCTTATGTTCAATATCCTTTTCGTAATATTG
TAGTTATTCATAACAAATCTGGAGGTGTTGGAATCTCTTTTCATTTGGTA
CTCAAACCTAATTTCTCTAACTAAGATATCCCTTGAGTGTGAAAGTACAA
CTCAAATGTTTTTGAACTTGTAATTTCAGTAACTACACAGACAAGTCCTT
GAGAGACCAAGCTTGACATATCTCAATTTCAAACAAGTTGGTTCTTCAAA
GAGAATGTTTTCAATTAAAAGATCTCAAGCCAGAGAAAGATATGTTCTTA
AAGTTATGAAATACCAAGATACAGAAAAGACCCAAGGCTCATTTAAAGAC
AAGACCTAAGTTCAATAGCTGTTGATATCAAGTCAATATAAGGCTTCCAT
TACAGACAACCTACAGATTCCTAATCCTTTAAAGTTCTCTCACAGATTCA
ATCTTCATGTAAGTTTATTTTATTGTTTGTGCACAAAGTGATAGGTTTCT
TAACTCAGCACTTTACATATGAAGATATTCGTGATGCAGAAGATGCACTT
CACTATGAGAATCATGTCCGTTGTCAAGGCCGAGAATTGGATGTCCAATT
CGCAGAAGGAGATAGAAAGAGTGAGTGTTCTCTCCAGGTCTTGTTTTTCC
ATTTCAAAGTCTATCTTTTTTTATCAAATTTGTTATGAAATTGAATTAAA
AGAATTCAAACGGCTTATATCCTCTGTAATCTTAAGTGCAACAACGTGAA
TCCAGTGTCCTTGCTTATTCTTTGTAAATTCTCTTAGATGGTTGGGTTTA
ACTTTTTATTTCAGCCCCCGGACAAATGAGAACTCGAGATGGTGACGATG
ACAGATATGGTGGTGGATATCGTGGCGGAGGGTAAGATGACTATGTTAAA
GTACACAATCTGTTAGTTTGTGGGTGTTTCAAAGCATCCTGTTTTCTTCA
GTACAGCAGGTACATATTTCTAAGATACCATAGGAAAAACGAAAAGGTAT
ATTTAGGGAGGGTTTAAGTAAATGGTAAATGTGCTGTCCAGGGTCGAAAG
GTCGAGTTATTATTTTGTGACACTTCATGGTTTGGGGGTTTCAAGTGCTT
AATTTTTATGAAAAACTAATATTCGAAAAAGGGTGAATTACAGACAATTT
TCAACAAGGAGCCCGAAAGTTTAGGGTCTTACATCAATCTGTTCAGTAAT
GATGCAATCTTTTGCTATTATGGAGTCATTTTGACAATGATGCTCAAGTA
TTCATACTGTCTGAGCTGAACTACACGAAAAGAACTATCTTGTTCCAATG
TTTGTACGTATTTCGACAGCTTGGACTTTCTGGAATAAACTTTCCACATA
AAACTCTGTTTTTTTATCATTCAGGAGAAGAAGAAGTCGTAGTCGATCAC
CACCCAGGTATGATGATTTTTAAGTGTTTATAGTTTTAATTCTACACAGA
AATAGACAACTGTTATTGAGTAAGTGAAATTGTATAAAAATTCACGTAGG
CTAGTGGCTTTCTTCGAGCGAGTGAAATCATTACTTTCCTTCCAACAATG
ATGCACAAACTTTATTCAATAATGACTCTTTACGTGGATGATTGTTTAGT
ATTCATACTGTCTGAGTTGGATGTAGGAGAGAATACAATTTGACTAATTT
TCTCTTTGAAACATATCTACTACTACTACTCGGGTTAGGCCTCAAAGTGT
TCCAGAACCCTTAAACCAAGTAACAATTATATGAAAATATGATATACTAT
ATCAAAGCATTAGTGTATCTTTTTTACTGTCTAGAAGACTTAACTTAGAC
CTTACTTAGATTTACTTAGACCTTATAAATTCAAATTAAAAACTATTTTT
CGCTTTAGGAGGAGACGTAGAAGCCCATCCAGATCCCGTTCACGCTCGAG
ATCACGCGGCCGTCGTCGAAGCCCATCTCGTAGTCCGCGTCGATCAAAAA
GTCGTTCGCGCTCCCGTTCGCCTCGTAAACGTTCTCGCTCGCACAGTCCT
CGAAAAGTATCCAGAAGCCGTAGCAAGAGTAGGAGCCGTAGCCGCAGTCG
TAGCCCGAGTAGAAGTAGAAGTCGTTCAAAGAGTAGATCACCTCGCAAAT
CTCGCTCGAGGTCACCATGAATTGGGAGGGAACAAGAATATAGAAGAGAG
CGAAATATTTATAGACACTCTTTACAGCTGGGCAACGATATGTTTCGATC
ACCTATATTTACATCTTTTTGGAATGTAATAATCACGTGGCAAATCTCTG
AGTAAGGTGTTAAAAATCGAGTACAATCCCACATGATTTTGTATATCTTT
TCATTTTAAAACAGCGAGTAGAAATTGTTTTTGTGATGTAGTGTAAATAA
ACAACATTTTTAACAAACTTTTTTAAGAACTTATTTTCACTGTACTTACC
TGTCGAAGGTTTACATAAATTTTTTTTCTCTCTCTCACAGATCGTCTCGC
ACATGTCCCGAGATAAACATGATCTTGCTTTACCTGGCTATATCGGGCCC
AATTTTCCTGGTGGATTTTAATCAGAAACAAAGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001574XLOC_001574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002900-exon-sc0000023-1575043694:967047..967251TCONS_00002900-exon-sc0000023-1575043694:967047..967251Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1575043694:964047..964076TCONS_00002900-exon-sc0000023-1575043694:964047..964076Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1575043694:963544..963822TCONS_00002900-exon-sc0000023-1575043694:963544..963822Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1575043694:963121..963187TCONS_00002900-exon-sc0000023-1575043694:963121..963187Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1575043694:962595..962627TCONS_00002900-exon-sc0000023-1575043694:962595..962627Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1575043694:961465..962143TCONS_00002900-exon-sc0000023-1575043694:961465..962143Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1510915933:967047..967251TCONS_00002900-exon-sc0000023-1510915933:967047..967251Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1510915933:964047..964076TCONS_00002900-exon-sc0000023-1510915933:964047..964076Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1510915933:963544..963822TCONS_00002900-exon-sc0000023-1510915933:963544..963822Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1510915933:963121..963187TCONS_00002900-exon-sc0000023-1510915933:963121..963187Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1510915933:962595..962627TCONS_00002900-exon-sc0000023-1510915933:962595..962627Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1510915933:961465..962143TCONS_00002900-exon-sc0000023-1510915933:961465..962143Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1491911889:967047..967251TCONS_00002900-exon-sc0000023-1491911889:967047..967251Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1491911889:964047..964076TCONS_00002900-exon-sc0000023-1491911889:964047..964076Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1491911889:963544..963822TCONS_00002900-exon-sc0000023-1491911889:963544..963822Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1491911889:963121..963187TCONS_00002900-exon-sc0000023-1491911889:963121..963187Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1491911889:962595..962627TCONS_00002900-exon-sc0000023-1491911889:962595..962627Clytia hemisphaericaexon
TCONS_00002900-exon-sc0000023-1491911889:961465..962143TCONS_00002900-exon-sc0000023-1491911889:961465..962143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:961465..967251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.5754	40.5047	24.5158	23.2159	45.5749	32.3126	19.1759	20.8849	14.1114	11.994	6.45245	9.57181	13.9269	20.4287	14.2532	17.0361	17.2869	16.3731	6.98587	5.90019	12.4138	13.1437	60.683	49.0712	17.8475	18.2361	7.21096	6.90763	32.9755	47.9043
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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