TCONS_00002927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002927
Unique NameTCONS_00002927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002927 ID=TCONS_00002927|Name=TCONS_00002927|organism=Clytia hemisphaerica|type=transcript|length=499bp
TGGCGGTAGAAGGCGGAAACGACATAGCATAACGTAACAAATTATtgaat
tcgaacctctataactcgaataccTCCTTAATTATaaaaagttttctcgt
ccctttaGTAAGAACGGCATTGTTCTAACtaaactttactccataactcg
aaatttccttaactcgaccAGATGTTCccgtgtgtgttcgagttatggag
actccactgtacaaAAGTCATTGGAACCATACCCAATTAATGGAATTTCG
ATATACAAtgacataaacaaaaaaattgatagtGGAAATTTCAGATTCAT
TCAAGAAGGTTAACCACACCACCAGAATCTTTGCAAAGAGATGACACACA
AAAAaccggccagaaaaaaaaactgaaaggaaATTTCCCCTTcttgtttg
tttctttttactgttgttatttttattataattgtGTGTGTGTTTTTATG
ATGTCTATTTTTCTCGTTTCTTGTGGCCAGTTGTAACATCATGGTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000023:613675..614173

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002927 ID=TCONS_00002927|Name=TCONS_00002927|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000023:613675..614173 (Clytia hemisphaerica)
TGAAACCATGATGTTACAACTGGCCACAAGAAACGAGAAAAATAGACATC
ATAAAAACACACACacaattataataaaaataacaacagtaaaaagaaac
aaacaagAAGGGGAAATttcctttcagtttttttttctggccggtTTTTT
GTGTGTCATCTCTTTGCAAAGATTCTGGTGGTGTGGTTAACCTTCTTGAA
TGAATCTGAAATTTCCactatcaatttttttgtttatgtcaTTGTATATC
GAAATTCCATTAATTGGGTATGGTTCCAATGACTTttgtacagtggagtc
tccataactcgaacacacacggGAACATCTggtcgagttaaggaaatttc
gagttatggagtaaagtttaGTTAGAACAATGCCGTTCTTACtaaaggga
cgagaaaactttttATAATTAAGGAggtattcgagttatagaggttcgaa
ttcaATAATTTGTTACGTTATGCTATGTCGTTTCCGCCTTCTACCGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001600XLOC_001600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002927-exon-sc0000023-1491911889:613675..614173TCONS_00002927-exon-sc0000023-1491911889:613675..614173Clytia hemisphaericaexon
TCONS_00002927-exon-sc0000023-1510915933:613675..614173TCONS_00002927-exon-sc0000023-1510915933:613675..614173Clytia hemisphaericaexon
TCONS_00002927-exon-sc0000023-1575043694:613675..614173TCONS_00002927-exon-sc0000023-1575043694:613675..614173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:613675..614173 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.244674	0	0.906856	1.08413	0	0.260736	0	0	0.615195	0.672522	0	0.448226	0.162725	0.66527	0.138934	0.225311	0.734704	0.564786	1.04038	0.680424	0.354847	0.346164	0.282055	0.127525	0	0.264364	0.503245	0.895128	0.678923	0.415029
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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