TCONS_00002931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002931
Unique NameTCONS_00002931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002931 ID=TCONS_00002931|Name=TCONS_00002931|organism=Clytia hemisphaerica|type=transcript|length=635bp
CTCAATTGCCCTTATGGTGAGAAAATTGGGATGCCAGAAACCGTCGACAT
TTTAGAAACATCTACAGTCAAAGACCTAGAAAACAGGTTATCGGAAATGA
TGAATATTCAAATATCTGTATTCCCAAGAAACCCACCAGACAAACATAAC
CACGATGAGTTCTCGCTGCCCAAAGATAGAGTTCATCTTTTCTCTCTGAT
TAGAACAGATGAAACCAAATCTTTGTCTTTACGTGTGTTCCGAACTTTAA
AGGCATTAGTTCATGTTAAATGTAGGAAATGTGGAAAAGACGAGGCATTA
GAAAAACAGGTTACCGTTAAAGATAAATTAAACCTTATCCAGGACGTGTA
TATTATTCAAGATGCCATGGAATTTCTAACTCGGAAATTTCAAGAATACC
GCTGTAGTTCTTATGGATTTTGCCAAAGACAGAACTTAAAGTTGTCGAAG
AAAAACAATATCTTGAATCTGACCTCCGAGTCGACGCTTGCTGATTTGCC
AGTAGattatgttttgaattttaaaacattttgtaCTTTAAGGAGTTTCA
TGAAAGGGACATTCAAGAAAGAGCCGGCACCATGGACGTGTAGTTATACT
AATCGGTAATTCAAAGAAGGAAAGATAAAGAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00002931-protein

>TCONS_00002931-protein ID=TCONS_00002931-protein|Name=TCONS_00002931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
LNCPYGEKIGMPETVDILETSTVKDLENRLSEMMNIQISVFPRNPPDKHN
HDEFSLPKDRVHLFSLIRTDETKSLSLRVFRTLKALVHVKCRKCGKDEAL
EKQVTVKDKLNLIQDVYIIQDAMEFLTRKFQEYRCSSYGFCQRQNLKLSK
KNNILNLTSESTLADLPVDYVLNFKTFCTLRSFMKGTFKKEPAPWTCSYT
NR
Run BLAST on NCBI

transcript from alignment at sc0000023:799080..799714

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002931 ID=TCONS_00002931|Name=TCONS_00002931|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at sc0000023:799080..799714 (Clytia hemisphaerica)
GTTTTCTTTATCTTTCCTTCTTTGAATTACCGATTAGTATAACTACACGT
CCATGGTGCCGGCTCTTTCTTGAATGTCCCTTTCATGAAACTCCTTAAAG
tacaaaatgttttaaaattcaaaacataatCTACTGGCAAATCAGCAAGC
GTCGACTCGGAGGTCAGATTCAAGATATTGTTTTTCTTCGACAACTTTAA
GTTCTGTCTTTGGCAAAATCCATAAGAACTACAGCGGTATTCTTGAAATT
TCCGAGTTAGAAATTCCATGGCATCTTGAATAATATACACGTCCTGGATA
AGGTTTAATTTATCTTTAACGGTAACCTGTTTTTCTAATGCCTCGTCTTT
TCCACATTTCCTACATTTAACATGAACTAATGCCTTTAAAGTTCGGAACA
CACGTAAAGACAAAGATTTGGTTTCATCTGTTCTAATCAGAGAGAAAAGA
TGAACTCTATCTTTGGGCAGCGAGAACTCATCGTGGTTATGTTTGTCTGG
TGGGTTTCTTGGGAATACAGATATTTGAATATTCATCATTTCCGATAACC
TGTTTTCTAGGTCTTTGACTGTAGATGTTTCTAAAATGTCGACGGTTTCT
GGCATCCCAATTTTCTCACCATAAGGGCAATTGAG

Coding sequence (CDS) from alignment at sc0000023:799080..799714

>TCONS_00002931 ID=TCONS_00002931|Name=TCONS_00002931|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000023:799080..799714 (Clytia hemisphaerica)
TTACCGATTAGTATAACTACACGTCCATGGTGCCGGCTCTTTCTTGAATG
TCCCTTTCATGAAACTCCTTAAAGtacaaaatgttttaaaattcaaaaca
taatCTACTGGCAAATCAGCAAGCGTCGACTCGGAGGTCAGATTCAAGAT
ATTGTTTTTCTTCGACAACTTTAAGTTCTGTCTTTGGCAAAATCCATAAG
AACTACAGCGGTATTCTTGAAATTTCCGAGTTAGAAATTCCATGGCATCT
TGAATAATATACACGTCCTGGATAAGGTTTAATTTATCTTTAACGGTAAC
CTGTTTTTCTAATGCCTCGTCTTTTCCACATTTCCTACATTTAACATGAA
CTAATGCCTTTAAAGTTCGGAACACACGTAAAGACAAAGATTTGGTTTCA
TCTGTTCTAATCAGAGAGAAAAGATGAACTCTATCTTTGGGCAGCGAGAA
CTCATCGTGGTTATGTTTGTCTGGTGGGTTTCTTGGGAATACAGATATTT
GAATATTCATCATTTCCGATAACCTGTTTTCTAGGTCTTTGACTGTAGAT
GTTTCTAAAATGTCGACGGTTTCTGGCATCCCAATTTTCTCACCATAAGG
GCAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001604XLOC_001604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002931-exon-sc0000023-1491911889:799080..799714TCONS_00002931-exon-sc0000023-1491911889:799080..799714Clytia hemisphaericaexon
TCONS_00002931-exon-sc0000023-1510915933:799080..799714TCONS_00002931-exon-sc0000023-1510915933:799080..799714Clytia hemisphaericaexon
TCONS_00002931-exon-sc0000023-1575043694:799080..799714TCONS_00002931-exon-sc0000023-1575043694:799080..799714Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002931-proteinTCONS_00002931-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:799080..799714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217923	0.0812122	0.537712	0.423025	36.5506	28.7084	15.2885	19.2244	7.73402	16.5696	13.495	6.34502	18.0623	9.94419	3.30173	8.04243	3.7424	7.68749	19.3694	21.3862	6.08617	6.21097	1.9642	2.01444	3.61538	3.40808	10.4522	9.67489	0.369742	0.0941772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top