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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002939 ID=TCONS_00002939|Name=TCONS_00002939|organism=Clytia hemisphaerica|type=transcript|length=1464bp
AGAAAATCAGACACTCAGTCAAAAGCGGAATCGGAAAAAGTTCGAAATGA
AGTTGTAATCTGTGGTGATAGTATGTTAAATAACATTGTTGGTAAAAAAC
TGCGTGTCGACGAAATCCACCCGAACTATTGTTCTTAGCTTTCCTGGTGC
TGATACTGATGATATGCTTGATTACTTAAAGCcaattcttattaaaaaga
aaCCAAAGTATTTAATTCTCCATGTCGGAACTAATGACATTACGTCTGGC
TGTGACgctgtaaaaaaaatttgaacgaATTCGAGACCTGGTTATGGAAA
TTAGCCCCAACAATGAACTGATCATTTCGAACGTCATTGTGCGAGATGAT
AAAAATGCCACCAAAAATATGAAAGACGAAGTCAAACTCAAAAATGATAT
ATTGTCTAAATTCTGCGAAAAGTTTAATTTACACTTGATAAACCACAAta
atattggtaaaaatatgTTGTCTAAAAAGAAACTACATTTGAATGGTAAC
GGAATatcaaaacttgctcaaaacttaaaattcttcATTTCTGAAAGATT
GTTGCTGAGAATCTGAAAACCAGAATGAAGCTGatgaaatggtttgttta
tCCTCTGATAATGTTGGCACTGATGACACTGATATGGTacatttaagaaa
attgaaattgaaaaatccttCTAATATACCTATGTCATATCTTATNGACA
CTGATATGGTacatttaagaaaattgaaattgaaaaatccttCTAATATA
TCTATGTCATATCTTATTATTAACTCGATTAGAAATAAATTCACTGATCT
ACAAGTTTTAgtcgaaaaaacttttgatgttaTTACTATAGCAGAAACTA
AACTTGATGAGTCTTTTCCCAGTGCTGATTTTAACCTTCAGGGCTATCAC
TTTCCTCCTTTTCGCATACATTGTGATTCAAATAGTGGAGGACTTTTAAC
TTATGTGAAAAGTAATATTCCTTCACGTCACATGAAAAGCTTCAAATTAG
ACCCTTCTTTGCACATTCTTCCGGTAGAACTAAGACTCAGGAAAGATAAG
CTGCTTGTTTTTAACATATATAGGCCAGATAGAATAAACttagatttatt
ttttaatactttATCTGACGCAATACACTTCTATGAAGTAGACTATAACA
ACATCATCTTCATTGGAGATTCTAACCTTGAACCTACTGATCCTAAGCTG
GTACGTTTCCTTGAACTAAATGACATGGCTAATGTCATGAACTCAAAAAC
CTGCTTTAAATCTATAAATGGAACGTGCATTGACCTTATTTTGACTAACT
CATAAAGCGATTTCCATAGACTTATTTATACAATGCTAAAGACAACGTTT
GTAAAGTTATCTCCAAAAATCGTAAAATATCGAGATTATAAAAATTTCAA
CCAAGAACAGTTCTTATTTGAATTGGATTTGTGTATTTCTAGtaataata
ttgaaaattatgac Run BLAST on NCBI protein sequence of TCONS_00002939-protein >TCONS_00002939-protein ID=TCONS_00002939-protein|Name=TCONS_00002939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MVCLSSDNVGTDDTDMVHLRKLKLKNPSNIPMSYLXDTDMVHLRKLKLKN
PSNISMSYLIINSIRNKFTDLQVLVEKTFDVITIAETKLDESFPSADFNL
QGYHFPPFRIHCDSNSGGLLTYVKSNIPSRHMKSFKLDPSLHILPVELRL
RKDKLLVFNIYRPDRINLDLFFNTLSDAIHFYEVDYNNIIFIGDSNLEPT
DPKLVRFLELNDMANVMNSKTCFKSINGTCIDLILTNS Run BLAST on NCBI transcript from alignment at sc0000023:987098..988561 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002939 ID=TCONS_00002939|Name=TCONS_00002939|organism=Clytia hemisphaerica|type=transcript|length=1464bp|location=Sequence derived from alignment at sc0000023:987098..988561 (Clytia hemisphaerica)
gtcataattttcaatattattaCTAGAAATACACAAATCCAATTCAAATA
AGAACTGTTCTTGGTTGAAATTTTTATAATCTCGATATTTTACGATTTTT
GGAGATAACTTTACAAACGTTGTCTTTAGCATTGTATAAATAAGTCTATG
GAAATCGCTTTATGAGTTAGTCAAAATAAGGTCAATGCACGTTCCATTTA
TAGATTTAAAGCAGGTTTTTGAGTTCATGACATTAGCCATGTCATTTAGT
TCAAGGAAACGTACCAGCTTAGGATCAGTAGGTTCAAGGTTAGAATCTCC
AATGAAGATGATGTTGTTATAGTCTACTTCATAGAAGTGTATTGCGTCAG
ATaaagtattaaaaaataaatctaaGTTTATTCTATCTGGCCTATATATG
TTAAAAACAAGCAGCTTATCTTTCCTGAGTCTTAGTTCTACCGGAAGAAT
GTGCAAAGAAGGGTCTAATTTGAAGCTTTTCATGTGACGTGAAGGAATAT
TACTTTTCACATAAGTTAAAAGTCCTCCACTATTTGAATCACAATGTATG
CGAAAAGGAGGAAAGTGATAGCCCTGAAGGTTAAAATCAGCACTGGGAAA
AGACTCATCAAGTTTAGTTTCTGCTATAGTAAtaacatcaaaagtttttt
cgacTAAAACTTGTAGATCAGTGAATTTATTTCTAATCGAGTTAATAATA
AGATATGACATAGATATATTAGaaggatttttcaatttcaattttcttaa
atgtACCATATCAGTGTCNATAAGATATGACATAGGTATATTAGaaggat
ttttcaatttcaattttcttaaatgtACCATATCAGTGTCATCAGTGCCA
ACATTATCAGAGGataaacaaaccatttcatCAGCTTCATTCTGGTTTTC
AGATTCTCAGCAACAATCTTTCAGAAATgaagaattttaagttttgagca
agttttgatATTCCGTTACCATTCAAATGTAGTTTCTTTTTAGACAAcat
atttttaccaatattaTTGTGGTTTATCAAGTGTAAATTAAACTTTTCGC
AGAATTTAGACAATATATCATTTTTGAGTTTGACTTCGTCTTTCATATTT
TTGGTGGCATTTTTATCATCTCGCACAATGACGTTCGAAATGATCAGTTC
ATTGTTGGGGCTAATTTCCATAACCAGGTCTCGAATtcgttcaaattttt
tttacagcGTCACAGCCAGACGTAATGTCATTAGTTCCGACATGGAGAAT
TAAATACTTTGGtttctttttaataagaattgGCTTTAAGTAATCAAGCA
TATCATCAGTATCAGCACCAGGAAAGCTAAGAACAATAGTTCGGGTGGAT
TTCGTCGACACGCAGTTTTTTACCAACAATGTTATTTAACATACTATCAC
CACAGATTACAACTTCATTTCGAACTTTTTCCGATTCCGCTTTTGACTGA
GTGTCTGATTTTCT Coding sequence (CDS) from alignment at sc0000023:987098..988561 >TCONS_00002939 ID=TCONS_00002939|Name=TCONS_00002939|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0000023:987098..988561 (Clytia hemisphaerica)
TTATGAGTTAGTCAAAATAAGGTCAATGCACGTTCCATTTATAGATTTAA
AGCAGGTTTTTGAGTTCATGACATTAGCCATGTCATTTAGTTCAAGGAAA
CGTACCAGCTTAGGATCAGTAGGTTCAAGGTTAGAATCTCCAATGAAGAT
GATGTTGTTATAGTCTACTTCATAGAAGTGTATTGCGTCAGATaaagtat
taaaaaataaatctaaGTTTATTCTATCTGGCCTATATATGTTAAAAACA
AGCAGCTTATCTTTCCTGAGTCTTAGTTCTACCGGAAGAATGTGCAAAGA
AGGGTCTAATTTGAAGCTTTTCATGTGACGTGAAGGAATATTACTTTTCA
CATAAGTTAAAAGTCCTCCACTATTTGAATCACAATGTATGCGAAAAGGA
GGAAAGTGATAGCCCTGAAGGTTAAAATCAGCACTGGGAAAAGACTCATC
AAGTTTAGTTTCTGCTATAGTAAtaacatcaaaagttttttcgacTAAAA
CTTGTAGATCAGTGAATTTATTTCTAATCGAGTTAATAATAAGATATGAC
ATAGATATATTAGaaggatttttcaatttcaattttcttaaatgtACCAT
ATCAGTGTCNATAAGATATGACATAGGTATATTAGaaggatttttcaatt
tcaattttcttaaatgtACCATATCAGTGTCATCAGTGCCAACATTATCA
GAGGataaacaaaccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002939-exon-sc0000023-1491911889:987098..988561 | TCONS_00002939-exon-sc0000023-1491911889:987098..988561 | Clytia hemisphaerica | exon |
| TCONS_00002939-exon-sc0000023-1510915933:987098..988561 | TCONS_00002939-exon-sc0000023-1510915933:987098..988561 | Clytia hemisphaerica | exon |
| TCONS_00002939-exon-sc0000023-1575043694:987098..988561 | TCONS_00002939-exon-sc0000023-1575043694:987098..988561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:987098..988561 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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