TCONS_00002949 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002949
Unique Name	TCONS_00002949
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2097

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000024:247240..254059+

transcript sequence

>TCONS_00002949 ID=TCONS_00002949|Name=TCONS_00002949|organism=Clytia hemisphaerica|type=transcript|length=2097bp
ttttgacgtTCACTGTTCGGTGCGTCAGACTTTACACTGATACTGGTCTA
GGCTCTGTTGTATCGGGTGTTTTAAGTATCTTAATTATCAGGAGATTGTC
CTAGTAGCAAAGTTTATAGCTCTGTCTCATTGAGACTGTATGTAAAGAGT
TAGAGACATAAAAGGACGTtcaaacaatgttgtgtgccagctgggatgtg
tttcaaaacaatgaagtaataattttcaaaatatcaaggTATTATCGATC
TTATTGCATCAAACTCTaaactcaaataaaaaataccttAACAGAATACC
TATTATCataatacgtataatacatTTTTAATTATACAATACATGATTAT
CATCCACCTTCATATTTGAAATCCACCTTATAGGAGCAAAACAATCAagt
aataatttttaaaatatcaaGGTATTATCGATCTTATTGCAACAAAATCT
AAACTCAAACAGAATACCTATTATCGTAATACGtataatacgtataatac
atTTTTAATTATACATGATTATCATCCACCTTATATGAGCCTAATACCAC
TCTTTGCAAGCTATAAACAAAAGGAAAAATCCCACTTAAGGAACGCCTCC
TAGCATTAGGGTGCCCTGTATGATTTTTAAACcattttcttctattttct
aAATACCATCCCACCATACATATAAACTTCTGTTAAAAAATTGACAACCT
TGAGATATTAGTCACATTGAAATTCTCATTTATTTCCAAACTAGTTTAAG
AGGTAGAAGGTAGAAGGTTGTAGTTGTAgtcatttggaaattttcaaggG
ACTTCAAGATGAGATCgattttgtttttggtttttataGCTCGCTTTGTG
TATTGCAAGCCACCACAATTTGAGAATCCTGTGATATACGAGTACGAAGA
AGATAAAGTATACAGTGCCAACGGTCAAAGTTATAATGATGAGAAACCCT
TTGGTTATCTTCGAGCTGTTTTACCACATCCACCCAATCATGACCGACAC
AATCCTGTTTTTGAACTTGAAGACCTCCAAGATCGACAAATTGAGATGAG
ACTTGAAACTTCACTATCGCAAAAGGGAGCAACAATTTGTATTCGAGATA
ATGACGAAGGGCCAGACATTTGCTCACAGGGTTCAATCAACCAGTGTTAT
ATGGCAtcgaaatcaaaattgaaatttgaaatttactgTATGGAAAGTTG
CCAATCGAGTGATGTCGAACTGTTTGTACGATTCGTCCCCAGTAAAAAGA
ACGCCAATGATATGTGGTGTACAATGAGAGAAACAGGTGGTTACCCTAGT
GAGCTTATTGATGGGCCGCCCCTCGCTCAAATTGGTAAAGCGCCAGTTAC
GCCCGCACCAAGACGTGAGGGCGGGGATGGTACTGATTCCAGTGGTTCAC
ATGGGCGTATGATTTATCCAGCATTGACAGTAATGATCggaagtttgttt
gttttctttgcTTTGTAGACCATTTGACTAGCTATATTTTGTAACTAAGA
TTTTCTTTACGTTCGCTTGCACAAGACTTTtagatggccaaaatattaag
aaaaaggttATGAGCGTTTTGAGGCTTTACTGATtctaaaacatccaatt
ttttctaaatgaacaaaaaatactcaaaaaatggtgaaattaataagaat
atttttagacttaaaactcaaaaagttaagaacatcccaaaggcttcaaa
aaaaaattaggtgtTATTATAAAAACCGTGTTCTTATTACTAGCCGTAAC
TTGACTTGCATTAAAATCTGTAACGTTCACTCGCTAATAAAGAACTAAGT
CGACGTTTATCTTATTTTCATCTTTACCTAAGTATacttgtttcaatttt
taacttttccGTGCATATATTATATATCATATCTTGTCAAAGTAAAACCA
ATTTTCTCCGTCTATGCGAGAGTGTATACAATATAGCGTAGTCAAGAAAA
ACACATCATCTTTCCATGAATATTTCGGCCAACTGGccattttcaacatt
atatcaTATCATTGTTTCCTTTTTGCTATAATTTCGTGTATATTTTAGGC
GAATTtcagaataaataaatttaacTTTCCGTTACTGTTTTCAAGAC

Run BLAST on NCBI

transcript from alignment at sc0000024:247240..254059+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002949 ID=TCONS_00002949|Name=TCONS_00002949|organism=Clytia hemisphaerica|type=transcript|length=6820bp|location=Sequence derived from alignment at sc0000024:247240..254059+ (Clytia hemisphaerica)
ttttgacgtTCACTGTTCGGTGCGTCAGACTTTACACTGATACTGGTCTA
GGCTCTGTTGTATCGGGTGTTTTAAGTATCTTAATTATCAGGAGATTGTC
CTAGTAGCAAAGTTTATAGCTCTGTCTCATTGAGACTGTATGTAAAGAGT
TAGAGACATAAAAGGACGTtcaaacaatgttgtgtgccagctgggatgtg
tttcaaaacaatgaagtaataattttcaaaatatcaaggTATTATCGATC
TTATTGCATCAAACTCTaaactcaaataaaaaataccttAACAGAATACC
TATTATCataatacgtataatacatTTTTAATTATACAATACATGATTAT
CATCCACCTTCATATTTGAAATCCACCTTATAGGAGCAAAACAATCAagt
aataatttttaaaatatcaaGGTATTATCGATCTTATTGCAACAAAATCT
AAACTCAAACAGAATACCTATTATCGTAATACGtataatacgtataatac
atTTTTAATTATACATGATTATCATCCACCTTATATGAGCCTAATACCAC
TCTTTGCAAGCTATAAACAAAAGGAAAAATCCCACTTAAGGAACGCCTCC
TAGCATTAGGGTGCCCTGTATGATTTTTAAACcattttcttctattttct
aAATACCATCCCACCATACATATAAACTTCTGTTAAAAAATTGACAACCT
TGAGATATTAGTCACATTGAAATTCTCATTTATTTCCAAACTAGTTTAAG
AGGTAGAAGGTAGAAGGTTGTAGTTGTAgtcatttggaaattttcaaggG
ACTTCAAGATGAGATCgattttgtttttggtttttataGCTCGCTTTGGT
AAGTAAAATATAGCTTTATTATCAGTGATCTAAGTTATTCCATCTCAGGG
ATATgtataaaattagatttttctgTCTCAAAACTCAGtaagattttaag
aattttagcTAATTTTGGGGGTGAATTGTGGTCTATGTTCTACTTTtagc
aaagatggcgcattacTTTGCTTCGCCtgccgttgcttgggaaatacaga
gtagctctatctcgtattttatataaagtaaacgTTAAAAACACAGTTAT
GTATGCGACGTTTCGATGGTTGTCTTTATCAAGTAGTAAAATCgtagccc
gaaaggctagagtagaatctcttaATCTtttccaggcaagaaaaagtgaa
gccacttatttcccatccagaacgcacctagaacgcgccgtaataatgac
gacggattgtatctagcggtttctttgttttcgaggaCTCCATTTTTTAT
AAAGTGATAGATgtgatagattttagtttcaatccggcgttagTGTATAA
ACCACGTGCCCGCACTGGATGGGAAatatgtactcttaggttccaaataa
acggccccccccccgcttgttaatttttcgaaaattttccaacccccccg
gaccttattaggacccccccgtttattaatctctaagaatattttcagct
gtcaaagagaaggccccttattttgctctaaatagtctgattttagccta
tttttaccttatttttgggtttcagaagtacaatttccaacccccccggc
ccTTATTAgggcccccccgtttattaatctctaagaatattttcagctgt
caaagagaaggccccttattttgctctaaatagtctgattttagcctatt
tttaccttatttttgggtttcagaagtacaatttccaacccccccggcaa
ttaggccccccccccgtttattaaaatctagaaaattttccaaccccccc
ccgtttatttggaacctaagttCTCGcacttcgggcttggaagtcaatga
tcATAGTATTATCATGtctttataatattttatattttgttttcactAGT
GTATTGCAAGCCACCACAATTTGAGAATCCTGTGATATACGAGTACGAAG
AAGATAAAGTATACAGTGCCAACGGTCAAAGTTATAATGATGAGAAACCC
TTTGGTTATCTTCGAGCTGTTTTACCACATCCACCCAATCATGACCGACA
CAATCCTGTTTTTGAACTTGAAGACCTCCAAGATCGACAAATTGAGATGA
GAGTAGGTTTTTATCCCAATGAGTTTCAAGGTCGTCAAGCGAccatagtg
cagtggtagagcatccggctacggttcgcaaagttgtgggttcaaccctc
agccgggtcataccaaagagttccaaaatggtacttgatgcctctctgct
tgatgttcagcaattaagagaaggatcaagggtatgtgtccagggagaaa
gagtggcgccctcatcccctaccttcgggtcgcctccgaatGCGGTCACA
TACTTACTTCAAGGTCGAATGCTAGCGGCAAAACATCAACCTTGATCAAT
CAAGAAAAAGTGTAGTTCGGATAACGGATTGAATCTAACCAtgcattctt
ttgtttttgtgatttacattttcaaaaacccTGGCCGTAAATGTTACTTC
CAATCGAGCATTTGCatgaaatgggcttttccagaaaaaatttgaatatg
ggggtggataatgtaacattttttgaaatttacccccggacatagTAAAA
TTTGACCCctcggacaagcatcagttgaccccctggacataaCTCTCAAG
CcgagcaaaattaccccaaaagagagcaagtttaccccctcCCCGGGACA
CTATCCTCCATCCCCATGTACGGATATTCTCTGGAAGAGCCCAAACCACG
CGGGATGCGTAACACGTGGGAAAGTTTgcagtggcttcaaatcctaccaa
ggagatccAACTTTAGTGGTCTCTGGGtatatattttaaaaaagcaaaat
aatACGTTCTCTACTATAGACGCTTGGGTACTTAGAAGGCCgggaaaatt
aagtttttagaCCGCAGctgttaaaattttaaatcccaaatttggcaaaa
actcTAAGGAAAATTAACGAATTTAGCAGAAAATAAGGCTGATTCGGGAA
GTTTTAATCAAGGCGAAAATTTTAGATTCTCAGCTCGCGAAAAAAGCCCT
TGTAAAAATCAATTCACTAAAGGTACACTTGCActgatgaataatttttt
tatctttcagCTTGAAACTTCACTATCGCAAAAGGGAGCAACAATTTGGt
gagttttgaaataaaaagagcTGTTATTCAGAGCTTTCTAAGTGGCTAAG
TAGTTTAGCTGACAAGGTGTGCATAATACTCCTTTGACTAACTAAATTGA
CATTTTCATCCCacaaatgacatttttttggccaaaagcggAGATATTTT
CCCTTCACTTGCCTACTAGACCTTTTCATGaatacgtcacaaacatcact
tgcctcgtattcaaacaattaccatggtggttatgtctcttgagacatta
aatgatttttatgaataaaaagtagttttaagataatccgctgggagtta
atcatcttggcaataatttcaaaacgaggcaagtgatgttcgtaacatAA
TTTAGGAAAAGGCCTATTGACTACTAAATTGACATATTTTAATCCCACAA
GTGATGCCTTTTCGGCCAAAGGCGGAGAAATTTTCTCTTCACTCGACTAC
TTCTTAAACAATAACGATCAGTTTGATATGTGGCAAAATTCCAGAGATAC
AAagatctgtcaaaaataactggaattccacgGGGGTAGCTTTTTagatc
ctactaaaattcagaggggtttaaacctgaaattgcctggaatttcAGGg
agttacagcatttccagccacaacaGGGGTGGGTATACGGtttctttctg
gaaaagcccattattaCACAGAGTAATTCAAGGATATTTTTATTATAGTA
TTCGAGATAATGACGAAGGGCCAGACATTTGCTCACAGGTAAAATGTTAA
CTCTTGCCTGGCTAAGTATCCAAACTCAACACAACAGTTGAGTCTCCTGA
GCTGGAACCTTTATTACTCGAATTTCTCCTTAATTCCAACAAATTTTCTT
GCCCCTTCATTTgataatgccttataaaccttactccataactcgaacaa
gtttaaGTTCCccgtgtgttcgagttatagagacttcaCTACCGCGCAAT
TAGCCGTACAAAGTGCTTTATAGCCTGGTGTACCTAGTACGTGCTTAACC
TATGGTTAAGTAATTCTTATTTGAGTGCAATAAATTAAGAGTCGTTAGGC
CGGTTGGCAGACGCCTGGCTTGTCTAGTTAACCAAATCTCAACTAGTAAA
AACAACCCTAAAAAGGTCGGTGTTttagaaaagttgcataattttttttt
catctcagcttcgaggtatgcttagcatagggggggggggtactcaaggt
aaatgacctaccagacgttcggcccttaagggtaggttttcatagttcag
ctagtgcactgtaagggtagcaCAGGAAAAAATCGTCAAATCACACTCGT
GTGAAAACTGATCTCCCACAGTGGGATTCGGTTCGTTTTTCACACGGGTG
GGAAAAGGTAATTATAGATATTTTGATAGATATTTTGGcgagatattttg
aaaaagtgcactgtaagggtatgatttttcatggaaattcactgcactgt
aagggtccgattttagaagccaaattttgggccgaacgtatggtcgtttt
cagatcgagtgccccccccggggtatgcttataaacgttatgcttacaaa
aaaagagtttattatacttaatatttttttatgttaCGGATAGGGTTCAA
TCAACCAGTGTTATATGGCAtcgaaatcaaaattgaaatttgaaatttac
tgTATGGAAAGTTGCCAATCGAGTGATGTCGAACTGTTTGTACGATTCGT
CCCCAGTAAAAAGAACGGTAAGATTCTGAaacacagatttctgtaaagct
aAATCATCcgagcttctaattttcactttcattttcaagccccagcaaaa
gtgatgacgtcacatggagaccagcaaaatggtcaaatttttatcaccac
tcgtttttgtaatcttatagacctaattgatcatttaaaaagaTTAGTTT
GCTTTAAACaagtctgtgcacacgaagaacattgtagctctcactaaagg
gctagatgtcgtactttaagccatcacaggcaaaaaaaaaatgaatatcg
caagaaatatagttgttattgtttttgaaaatccgcgaatcagaaaaaaa
aaatgaatatcgcaagaaatatagttgctattgtttttgaaaatccgcga
agcttctgattggtcaggcgctgaaattctattgtaatgtcacgtgactt
agttaggatttcctacctgccacggcacacttttcagccaaagcacgaca
tctagccgtcttcgggctttataaatctatgtgcTGAAATGACATGAGCT
TGTATATTCACCGGAGGTAGTCTAGACTGGTACGCCACTCGGGCTTGAAT
GGAGTGGGAAAAGTAAAGTTAGGATATAGGTAAGAATAGGAAAAGAATTT
ATCGGCGGGAGGGGCTGAAAACTTACAGTCTGTAAATCAGCACCTTTAAA
GTTTATATTTCAATTGTCTATCCATTCAtgattacacccctgtctcacag
cccctgtggaactttttttctcagtgggaTTAAAATTCCTATTggaatcc
caatggggatagagcTTCGATCATCGTCTGTTTTTAGCCAAGTTCACGTT
TTTAAGAttcaaaattttgctcaaaGTTTATcgtttcaaaaatattataa
gGTTTATAAATTCAGTGTCagtggttttgaagtgcaatttttaaacattg
aatttcgaatgggaatgaaataaaagttaattaccAATTGGGAGCTGAAA
ttctaaggtattttcccaccggggatgaCATTTTTGTCAATCCTTGAAGT
GGGGCTGGGCTCCCAGCGGGTCTGCCACACAGAGGTATATGATTAAATAA
CAGAATCAATCATCTTATTTATTTAGCCAATGATATGTGGTGTACAATGA
GAGAAACAGGTGGTTACCCTAGTGAGCTTATTGATGGGCCGCCCCTCGCT
CAAATTGGTAAAGCGCCAGTTACGCCCGCACCAAGACGTGAGGGCGGGGA
TGGTACTGATTCCAGTGGTTCACATGGGCGTATGATTTATCCAGCATTGA
CAGTAATGATCggaagtttgtttgttttctttgcTTTGTAGACCATTTGA
CTAGCTATATTTTGTAACTAAGATTTTCTTTACGTTCGCTTGCACAAGAC
TTTtagatggccaaaatattaagaaaaaggttATGAGCGTTTTGAGGCTT
TACTGATtctaaaacatccaattttttctaaatgaacaaaaaatactcaa
aaaatggtgaaattaataagaatatttttagacttaaaactcaaaaagtt
aagaacatcccaaaggcttcaaaaaaaaattaggtgtTATTATAAAAACC
GTGTTCTTATTACTAGCCGTAACTTGACTTGCATTAAAATCTGTAACGTT
CACTCGCTAATAAAGAACTAAGTCGACGTTTATCTTATTTTCATCTTTAC
CTAAGTATacttgtttcaatttttaacttttccGTGCATATATTATATAT
CATATCTTGTCAAAGTAAAACCAATTTTCTCCGTCTATGCGAGAGTGTAT
ACAATATAGCGTAGTCAAGAAAAACACATCATCTTTCCATGAATATTTCG
GCCAACTGGccattttcaacattatatcaTATCATTGTTTCCTTTTTGCT
ATAATTTCGTGTATATTTTAGGCGAATTtcagaataaataaatttaacTT
TCCGTTACTGTTTTCAAGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001620	XLOC_001620	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000024	supercontig	sc0000024:247240..254059 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.336121	0.107946	0.173145	0	0.522474	0.459101	0.0655348	0.122706	0.0605064	0	0	0	2.81842	3.63293	0.115778	0	0.0765316	0.0784425	3.41373	2.16705	0.0492843	0	0	0	0.383098	0.195375	0	0.074594	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002949 vs. Swiss-Prot (Human)

BLAST of TCONS_00002949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002949 (transcript) - C. hemisphaerica