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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002964 ID=TCONS_00002964|Name=TCONS_00002964|organism=Clytia hemisphaerica|type=transcript|length=518bp
CTATTTGAAAGACATTGACATTCACAAAAACTCCCACATAAAAGTTACTT
TTCTACTGGAAGAAGCTGGTATTGTAAAAAAACACTTCATAAAATATCAA
CATCAGTATACAGAAGAAGAAAATGCGTTTTTATCTTCTCACTTGTCTTG
TTGTCATCACATTAGCACGTGGCAGTAATGGGCTGATCGACTCTTTATTA
GGAAAGAAATGCACTGTGGATGCGGATTGCGAGGCGAACGAATGTTGTAC
ACCCACATTGAGTATGGGTGACCGATGTCGTGGTCATATGACCGAAGGAA
CAATTTGCTCATCTTTCACTGAAGAATTGATCAAGCGGCTTCACCGAAGA
TGTCCTTGTGAGGCTGGCACCTCTTGTAAACGAACTGGTAGCATTCTGGG
AATCTATAAGATCAACAGATGTGTCAAAGACGAAGCTTAaatcatgattt
tcaaatttatatataaaaaaattattatcatGGGAAATAACAAAGTTATC
GAATTTATTTCCAGTTCC Run BLAST on NCBI protein sequence of TCONS_00002964-protein >TCONS_00002964-protein ID=TCONS_00002964-protein|Name=TCONS_00002964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MRFYLLTCLVVITLARGSNGLIDSLLGKKCTVDADCEANECCTPTLSMGD
RCRGHMTEGTICSSFTEELIKRLHRRCPCEAGTSCKRTGSILGIYKINRC
VKDEA Run BLAST on NCBI transcript from alignment at sc0000024:704642..706263+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002964 ID=TCONS_00002964|Name=TCONS_00002964|organism=Clytia hemisphaerica|type=transcript|length=1622bp|location=Sequence derived from alignment at sc0000024:704642..706263+ (Clytia hemisphaerica)
CTATTTGAAAGACATTGACATTCACAAAAACTCCCACATAAAAGTTACTT
TTCTACTGGAAGAAGCTGGTATTGTAAAAAAACACTTCATAAAATATCAA
CATCAGTATACAGAAGAAGAAAATGCGTTTTTATCTTCTCACTTGTCTTG
TTGTCATCACATTAGCACGTGGCAGTAATGGGCTGATCGACTCTTTATTA
GGAAAGGTAAAAAATGCCAACGATAACCTGTTTTGAAATATCTGTTGGTT
ACGTATATTCGACTCTAGATATCTcgatcaaattctttttttatttgagc
tCTTCAGTCAGGTATATTCTCCCCTTTCTaatttttcaccccctggacat
aGTAGCAGTTTTAGCAGgattttcaatacccctggataATATACCTTCCA
GCCCATTCTTGGAGCTTTCAGCGCTTGGGTTCGTGAATAGTTGACGAAAA
AACACTTTTCTTCTTACCTTTTAGAAATGCACTGTGGATGCGGATTGCGA
GGCGAACGAATGTTGTACACCCACATTGAGTATGGGTGACCGATGTCGTG
GTCATATGACCGAAGGAACAATTTGCTCATCTTTCACTGAAGTAAGTTTA
TACATTGAATCCAAAGCAATTTTATATATCAAACTCAGTTCCACTGTTTC
ACCCAAAATTGTAGTTTGCCCAACTAAGCATCAACTTACTCACTCATCTA
GGATGTTTTCGTAGCTTTTACCGGTATTATCAgcattagacgatcctatc
gtctacgcACGAGGTCACTAAAAATGGAATAATTTAGGAAGGGGatgaat
tttgtgaaaaaggagTTTGGTCCGGTACGGAGTAAGCAGTGACGGCTCAG
TTTGTTCCATATTCTACAACCGCTATTTTTCCCTATACTGTCCGAACGGC
TCTAAACTCTTTGCATATATTTTCTCCGCTTTCACTATTcctctaacgga
cgatagcacTGTCTTAACCATTGCCAGCCTAAAAAAAGTATATAACTACA
CCCCTGGCTCACAGCCccgatggaacttttttcttcgtTTGGGTAAagat
tcctattgaaatcttaATAGGGATAGAAGTTTTATTGCTCCAAAgttaaa
aaacccagtgggaatggtttggagtgcaatctttaaacatggaatttcaa
aaggatgaaatcaaagtcaatttcctagtGGGGCTGAAACTCAAGGGTAT
TTTACCACCgtggacgaaatttttgcctaattttccagtggggctggggt
cccagtgggtctgtgacacaggggtgtatgatTGTGAGGTACCACTATAT
GTCTCTTGATTGAGGTCAATCTAACAATAATCTAACTAGACTAGAGAAGG
GTACCTAGATTTACGGTGAAAATCCAACCTCTCAAATGACAGACAAATCa
attattttgatcatttaTTTTGCATAGGAATTGATCAAGCGGCTTCACCG
AAGATGTCCTTGTGAGGCTGGCACCTCTTGTAAACGAACTGGTAGCATTC
TGGGAATCTATAAGATCAACAGATGTGTCAAAGACGAAGCTTAaatcatg
attttcaaatttatatataaaaaaattattatcatGGGAAATAACAAAGT
TATCGAATTTATTTCCAGTTCC Coding sequence (CDS) from alignment at sc0000024:704642..706263+ >TCONS_00002964 ID=TCONS_00002964|Name=TCONS_00002964|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000024:704642..706263+ (Clytia hemisphaerica)
ATGCGTTTTTATCTTCTCACTTGTCTTGTTGTCATCACATTAGCACGTGG
CAGTAATGGGCTGATCGACTCTTTATTAGGAAAGAAATGCACTGTGGATG
CGGATTGCGAGGCGAACGAATGTTGTACACCCACATTGAGTATGGGTGAC
CGATGTCGTGGTCATATGACCGAAGGAACAATTTGCTCATCTTTCACTGA
AGAATTGATCAAGCGGCTTCACCGAAGATGTCCTTGTGAGGCTGGCACCT
CTTGTAAACGAACTGGTAGCATTCTGGGAATCTATAAGATCAACAGATGT
GTCAAAGACGAAGCTTAaATGCGTTTTTATCTTCTCACTTGTCTTGTTGT
CATCACATTAGCACGTGGCAGTAATGGGCTGATCGACTCTTTATTAGGAA
AGAAATGCACTGTGGATGCGGATTGCGAGGCGAACGAATGTTGTACACCC
ACATTGAGTATGGGTGACCGATGTCGTGGTCATATGACCGAAGGAACAAT
TTGCTCATCTTTCACTGAAGAATTGATCAAGCGGCTTCACCGAAGATGTC
CTTGTGAGGCTGGCACCTCTTGTAAACGAACTGGTAGCATTCTGGGAATC
TATAAGATCAACAGATGTGTCAAAGACGAAGCTTAaATGCGTTTTTATCT
TCTCACTTGTCTTGTTGTCATCACATTAGCACGTGGCAGTAATGGGCTGA
TCGACTCTTTATTAGGAAAGAAATGCACTGTGGATGCGGATTGCGAGGCG
AACGAATGTTGTACACCCACATTGAGTATGGGTGACCGATGTCGTGGTCA
TATGACCGAAGGAACAATTTGCTCATCTTTCACTGAAGAATTGATCAAGC
GGCTTCACCGAAGATGTCCTTGTGAGGCTGGCACCTCTTGTAAACGAACT
GGTAGCATTCTGGGAATCTATAAGATCAACAGATGTGTCAAAGACGAAGC
TTAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002964-exon-sc0000024-1491911889:704642..704847 | TCONS_00002964-exon-sc0000024-1491911889:704642..704847 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1510915933:704642..704847 | TCONS_00002964-exon-sc0000024-1510915933:704642..704847 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1575043694:704642..704847 | TCONS_00002964-exon-sc0000024-1575043694:704642..704847 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1491911889:705116..705232 | TCONS_00002964-exon-sc0000024-1491911889:705116..705232 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1510915933:705116..705232 | TCONS_00002964-exon-sc0000024-1510915933:705116..705232 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1575043694:705116..705232 | TCONS_00002964-exon-sc0000024-1575043694:705116..705232 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1491911889:706069..706263 | TCONS_00002964-exon-sc0000024-1491911889:706069..706263 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1510915933:706069..706263 | TCONS_00002964-exon-sc0000024-1510915933:706069..706263 | Clytia hemisphaerica | exon |
| TCONS_00002964-exon-sc0000024-1575043694:706069..706263 | TCONS_00002964-exon-sc0000024-1575043694:706069..706263 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:704642..706263 + |
Blast
The following BLAST results are available for this feature:
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