|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002980 ID=TCONS_00002980|Name=TCONS_00002980|organism=Clytia hemisphaerica|type=transcript|length=781bp
TCAGGTCCTGAAGGAAGTATCAATTATAAAGGCGACCAAGCAGTATACGT
TTCGCCTACTGAAAACAAATGCGAAGAGAACCCTGGTTTCTACGCTGAAA
GTCAAGACTTGAGGAACCCTCTATATAAAAGTCGGAAAGTAGGTGTAAAC
AATCAACCGAAAGTGGAAACCAATCTTTATGAAGATTATGACAATCCTGA
GATGTATGAAACTTTTGAGACTACAGTTTATGATAATGAAAAATCAGGGT
CTACAGGCCGAAATGTGAGACCAGTTACTCAAGTAGGATACGATTATGTG
GATGATTCAATAGACCCTAAAAATCGTCTCAAAAAGGTCGATGATTCTAG
TACTGTAGGGTATGCTACACTGACAAATGTTCCAGAAAACATTTATGCAG
ATACTACTCAGCCTACTGTAGGACAGAATATAGCTCATGAGCCAGTAGAC
TACAAAAATACTGAAGGACTTGTACCAGGCTATGCAGTTTTGAATAAGAT
GCCGGAGAACATTTATGAAGAAACGGTCAGGGAGGAGACTAGAAACGACT
ATAGTCTGTTGGCAGGAACCACTCCACAGGAGGCTTATGCTGCTTTAGAG
AACAGCAAATATGCGACGTTAGAGGAAAATAGATTCCAACAAGAAAACTA
TGAAACACTGACGTCCAAAGATAAAAACCAGAAAAGTTTTTCTAAATATG
TTGGATGcccgaggtccacttaaagctttttttttaagCTGGAATAAATG
ACCCTATAGTACATGGTAGCTTTcaattttg Run BLAST on NCBI transcript from alignment at sc0000024:160360..162750- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002980 ID=TCONS_00002980|Name=TCONS_00002980|organism=Clytia hemisphaerica|type=transcript|length=2391bp|location=Sequence derived from alignment at sc0000024:160360..162750- (Clytia hemisphaerica)
TCAGGTCCTGAAGGAAGTATCAATTATAAAGGCGACCAAGCAGTATACGT
TTCGCCTACTGAAAACAAATGCGAAGAGAACCCTGGTTTCTACGCTGAAA
GTCAAGACTTGAGGAACCCTCTATATAAAAGTCGGAAAGTAGGTGTAAAC
AATCAACCGAAAGTGGAAACCAATCTTTATGAAGATTATGACAATCCTGA
GATGTATGAAACTTTTGAGACTACAGTTTATGATAATGAAAAATCAGGGT
CTACAGGCCGAAATGTGAGACCAGTTACTCAAGTAGGATACGATTATGTG
GATGATTCAATAGACCCTAAAAATCGTCTCAAAAAGGTCGATGATTCTAG
TACTGTAGGGTATGCTACACTGACAAATGTTCCAGAAAACATTTATGCAG
ATACTACTCAGCCTACTGTAGGACAGAATATAGCTCATGAGCCAGTAGAC
TACAAAAATACTGAAGGACTTGTACCAGGCTATGCAGTTTTGAATAAGAT
GCCGGAGAACATTTATGAAGAAACGGTCAGGGAGGAGACTAGAAACGACT
ATAGTCTGTTGGCAGGAACCACTCCACAGGAGGCTTATGCTGCTTTAGAG
AACAGCAAATATGCGACGTTAGAGGAAAATAGATTCCAACAAGAAAACTA
TGAAACACTGACGTCCAAAGATAAAAACCAGAAAAGTTTTTCTAAATATG
TTGGATGGTAATTATAGCGCTCTGCAACGCATACGTCAGAATTATTACTT
TTCACTTTTTTGACATTTGTACGAGTGGCAATTCCACAATTCAATGTAGC
TCAATTAAAGATACGTGCAAGTTGTTATATATCTTTTGTCAAATGATGCA
ATTAACGTGCAAAAGAGATTAACGCAAAGGGTGATTTTTCACTGAGACTG
TCTGGCGAAAATCGATTAGCTGAAACAAAGAAAATTGATAGGAAAGCATT
ACTGACTCCCAAAACAGTTTTCAAAGCGTTTACAACCCTTTGAATTTGAA
GAAAATTTTATTAAAAATCATCAACTCGCATATCAAGGGATTTAGAATTA
CAGCTTCTAATGAACATTTTCTGTGACAAGATTCCTCGTCTTTTGTATCA
AATCAATACAGATGAAAGTTTGCTCTTCAACTCTATCGGGAAAGAAAACA
CTTTTCCCATATGACTAATTTTTTACAAAAGAATCCCACTGCACGTTCTG
CTACTTTTATGGCAACCAATTTATTTATGCTGCCTTTGGCTGCGTTTAGA
CCAGCCTGGCATTTGTAATTGCTTGCAGTATTCTTTTGAATTCTATTGTT
CCGCGCAATTGTTCGGTTTGTCAAATGCCTAATGATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCTTAAATGCCATGACAGAAAATA
CAATGGAAAAGCTATTAAAATCGAATCCCTCATGAGCAAATGCCAAATTA
CAAATGCCAGTTGGTCTAAACGCAGCCTTTTTCGCTTAATTGGTCTTTAA
GCCAAGAGAGGTCTACACCTCTCTTGGAGAACAAAAGGTTTAATGACCGA
TTTTCGACGTTAAATCTGGAATGCTGATATGAAGCGATCAAAATCTGATG
TTAAGCACGAATCTTCATTGTATATTTTTTACAACCCTTAGAAATTTATG
AAAAGGACCGTTCATGAGAACCACTTATCTATCTAGCGTAGTGAAAAAGC
ACCCAAAGGTTGATGGGATAGGGACTCGTACAAACACATCAAGAGCAATG
ATGATATCAAAAATAAGATCTATTTTTAGATTCAGCGCGATGTATACAAT
AAATTTTTTTCTTATAGCCCGAGGTCCACTTAAAGCTTTTTTTTTAAGCT
GGAATAAATGACCCTATAGTACATGGTAGCTTTCAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002980-exon-sc0000024-1575043694:162044..162750 | TCONS_00002980-exon-sc0000024-1575043694:162044..162750 | Clytia hemisphaerica | exon |
| TCONS_00002980-exon-sc0000024-1575043694:160360..160433 | TCONS_00002980-exon-sc0000024-1575043694:160360..160433 | Clytia hemisphaerica | exon |
| TCONS_00002980-exon-sc0000024-1510915933:162044..162750 | TCONS_00002980-exon-sc0000024-1510915933:162044..162750 | Clytia hemisphaerica | exon |
| TCONS_00002980-exon-sc0000024-1510915933:160360..160433 | TCONS_00002980-exon-sc0000024-1510915933:160360..160433 | Clytia hemisphaerica | exon |
| TCONS_00002980-exon-sc0000024-1491911889:162044..162750 | TCONS_00002980-exon-sc0000024-1491911889:162044..162750 | Clytia hemisphaerica | exon |
| TCONS_00002980-exon-sc0000024-1491911889:160360..160433 | TCONS_00002980-exon-sc0000024-1491911889:160360..160433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:160360..162750 - |
Blast
The following BLAST results are available for this feature:
|
