TCONS_00002993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002993
Unique NameTCONS_00002993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002993 ID=TCONS_00002993|Name=TCONS_00002993|organism=Clytia hemisphaerica|type=transcript|length=3490bp
TGTGAAGTTGGAAGTTGGAccgttaaaaaaaatttcaggcaATCCGCCAA
AGGAAAATTTGTAGCAAAGATACTGGATTCCATTTAAAGAATTATTGCAA
AGATACTGGATTCCGTTTAAAGAATTATTGCGGGAATATTACCTAGCGGG
ATAGCTGTCCAACGTCCAACTGAGAACGGAAAGTGGTGCTCGGATCACAC
CTGTATATAACATTTTCCACACAAGAAAAAAGGCGGCGgtacaaattcca
aaaatttcagTTGAAAGTTGCAAATTCACCACACACTTGACCTAAAAATC
ACTCAAGAGATGAGATCGAATCCAAATTACGATGTTGTTAAAGAACCTAG
AGGTTTCATCAAGTGTCTAGAAGTGTTCTTGGCTATCTTTGCATTTGCTT
GTGCAACTGGTTATAGAGgtaatttgaaaattgaccaaacatCACCTGAT
GCACAACCCAAGGCACACGATGCACAAGGAACCATCCAATATCCATTTTC
ACAAATACTGGAAATGCCTTTCATCAAACCTGGGACCAATGGTACTATGC
ATACCTACACACTAGAAGTTGACCAGAGatcgaaaattgaatttttcgtC
TTCATCGGCGTAATGTGCTTCTTATACAGCTTGGGAATGTTGGTGTATTA
CATTTTCTTCGAAGAGAATAACACAATGAATGCTACTCCAGTAACATCAA
GCTGGTTGTCCCCACCTATCATTGACTTCGGACTCGGTGCTTTCTGGACA
TTGTTTTGGTTTTTCAGTGCATGCGCGTTCGCTGCAGGTGTCAATGCATT
AAAAGACCAAGTCAACATTGAAAGTTTGACCGGAGATGGAGGGGCATTCG
CCGAACCTTGTTCAAACGGCTACAAATGCGGAGGGACCAATCCTAAATAT
GCAACGATGACGGTGGCTATCCTTCTCGGTTTCTTGAACGTGTTTGTATG
GGCTGGTAACATTTGGTTCTTATATAAAGAAACACCATGGCACAACAAGT
CTCTAGCATCCGCCGGTGCACCTTCGACTGTCCAACAACCACCAAGCCAA
CCCGCCGCTGCGGCCATTTAAGCCGACGGCTCCACCATATGAACATTTTA
CTCCGCGACCTTATGACAGACAGACCAATGTCCATCTAACGTtagatgaa
atttgaaataatgttgtgtgtcagctgggaaagGTTATCGTCGCTTCTTT
CGGATAATTGTAAAAGTGGATTATGTATTACAACACCCCTCTTTGTCATA
TACATCCAAGCCAGATTCAATAGAGACAGACTTTATTTAACACATTTTCT
GTGTATCTGATAAACATAAATTACAGccttttgttttaaaagattGAGCC
AGAAAGTCATTTCACCATAAACATGATTTTCTATTAAAAATCTCGAACAA
CCTCTTTGAAAActcgctgtaaccttacagttGAAACCTACTTGTTTCAC
CTTGTCTATTTCACTCTCGTTTAAACCTTCGTTTATGCATCGCGACTATG
CTACTTTATTCCGGAAGGCTCGGGAGTAATATTACCAAAAGATGTGTTTC
TATCGTATAAACATTTTGTTGTAGGGCTATAAACCGTTTTATGTATGAGT
TAACTTTAGGAGCtagttttttatataaattatgCTTGAAGTATAAGTAT
TTTGGagtattttttaacattttctttttactttcaaGGGTATTATTGAC
TCGTCTTACTTAGGTAGTCTTTTTGGTTATAACATTACCATTTCACTTGt
gtatttttgtattaaatATCGAGATGtcttaaaaaatgtttattataGGC
TTCANTGCGGCCATTTAAGCCGACGGCTCCACCATATGAACATTTTACTC
CGCGACCTTATGACAGACAGACCAATGTCCatctaacgttagatgaacgt
tgaaataatgttgtgtgtcagctgggaaagGTTATCGTCGCTTCTTTCGG
ATAATTGTAAAAGTGGATTATGTATTACAACACCCCTCTTTGTCATATAC
ATCCAAGCCAGATTCAATAGAGACAGACTTTATTTAACACATTTTCTGTG
TATCTGATAAACATAAATTACAGccttttgttttaaaagattGAGCCAGA
AAGTCATTTCACCATAAACATGATTTTCTATTAAAAATCTCGAACAACCT
CTTTGAAAActcgctgtaaccttacagttGAAACCTACTTGTTTCACCTT
GTCTATTTCACTCTCGTTTAAACCTTCGTTTATGCATCGCGACTATGCTA
CTTTATTCCGGGAGGCTCGGGAGTAATATTACCAAAAGATGTGTTTCTAT
CGTATAAACATTTTGTTGTAGGGCTATAAACCGTTTTATGTATGAGTTAA
CTTTAGGAGCtagttttttatatatattatacTTGAAGTATAAGTATTTT
GGagtattttttaacattttctttttactttcaaGGGTATTATTGACTCG
TCTTACTTAGGTAGTCTTTTTGGTTATAACATTACCATTTCACTTGtgta
tttttgtattaaatATCGAGATGtcttaaaaaatgtttattataGGCTTC
ATTAGAATagtttataaaaataatgaaaaattatacatcataaaaattat
tttcttttataaggttaatcttttgttcatttttgttttagacAATATGT
TTTTATTAATAATACAAGACCATATTCACCTCAATTAAATTCAAACCGCA
ATTTTATTACCCTGttcgtaaatttctttaaatatttgACCTTAGANGGA
TAATTGTAAAAGTGGATTATGTATTACAACACCCCTCTTTGTCATATACA
TCCAAGCCAGATTCAATAGAGACAGACTTTATTTAACACATTTTCTGTCT
ATCTGATAAACATAAATTACAGgcttttgttttaaaagattGAGCCAGAA
AGTCATTTCACCATAAACATGATTTTCTATTAAAAATCTCGAACAACCTC
TTTGAAAActcgctgtaaccttacagttGAAACCTACTTGTTTCACCTTG
TCTATTTCACTCTCGTTTAAACCTTCGTTTATGCATCGCGACTATGCTAC
TTTATTCCGGAAGGCTCGGGAGTAATATTACCAAAAGATGTGTTTCTATC
GTATAAACATTTTGTTGTAGGGCTATAAACCGTTTTATGTATGAGTTAAC
TTTAGGAGCtagttttttatataaattatgCTTGAAGTATAAGTATTTTG
GagtattttttaacattttctttttactttcaaGGGTATTATTGACTCGT
CTTACTTAGGTAGTCTTTTTGGTTATAACATTACTATTTCACTTGtgtat
ttttgtattaaatatcgagatgtctttaaaaatgtttattataGGCATCG
TTAGAATagtttataaaaataatgaaaaattatacatcataaaaattatt
ttcttttataaggttaatcttttgttcatttttgttttagacAATATGTT
TTTATTAATAATACAAGACCATATTCACCTCAATTAAATT
Run BLAST on NCBI

protein sequence of TCONS_00002993-protein

>TCONS_00002993-protein ID=TCONS_00002993-protein|Name=TCONS_00002993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MRSNPNYDVVKEPRGFIKCLEVFLAIFAFACATGYRGNLKIDQTSPDAQP
KAHDAQGTIQYPFSQILEMPFIKPGTNGTMHTYTLEVDQRSKIEFFVFIG
VMCFLYSLGMLVYYIFFEENNTMNATPVTSSWLSPPIIDFGLGAFWTLFW
FFSACAFAAGVNALKDQVNIESLTGDGGAFAEPCSNGYKCGGTNPKYATM
TVAILLGFLNVFVWAGNIWFLYKETPWHNKSLASAGAPSTVQQPPSQPAA
AAI
Run BLAST on NCBI

transcript from alignment at sc0000024:224990..236382-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002993 ID=TCONS_00002993|Name=TCONS_00002993|organism=Clytia hemisphaerica|type=transcript|length=11393bp|location=Sequence derived from alignment at sc0000024:224990..236382- (Clytia hemisphaerica)
TGTGAAGTTGGAAGTTGGACCGTTAAAAAAAATTTCAGGCAATCCGCCAA
AGGAAAATTTGTAGCAAAGATACTGGATTCCATTTAAAGAATTATTGCAA
AGATACTGGATTCCGTTTAAAGAATTATTGCGGGAATATTACCTAGCGGG
ATAGCTGTCCAACGTCCAACTGAGAACGGAAAGTGGTGCTCGGATCACAC
CTGTATATAACATTTTCCACACAAGAAAAAAGGCGGCGGTACAAATTCCA
AAAATTTCAGTTGAAAGTTGCAAATTCACCACACACTTGACCTAAAAATC
ACTCAAGAGATGAGATCGAATCCAAATTACGATGTTGTTAAAGAACCTAG
AGGTTTCATCAAGTGTCTAGAAGTGGTACGTTTAAATTTTATTTAATTCT
TTCTGCATGTAAGTTTTATATGATATTCTCTTATTCTACTCCTCCGCTCC
ATGCGGCGGCGTGGAGATCTCGGGTTTTAGTCCAGGAGCTTGAGCTCAAC
TACTTTTTGCCTTTACTAATTCTGACGGGGGAAATTTTTTTCTGACTAAG
AAAAGATTTTCTGACTACTCAGGTTTGTGCATCAGTGCACAGTGGAGGGA
AACTTGCAAAGCCATCGAATGACAAATCCAGGCGTAACCAATCGAAGGTA
ATCGAATTCGATTTTTAATCGAATTCATCGAAACTAATCGAAGATTAATC
GTTTCAATTAGTCTTCGATTATCGAAGTTATCGAATGCTTATCGAATTAA
TCGAAATTTCCAATGTTTTTCTCAATTAATTCGATTAATTCGATTAACTT
CGATTATTTCGATTATCTTTCGATTACTTTCGATTACCTTCAATTAACTT
GATAAACTTGACCGCCGACTTGCGATTTTGATTGTGTCATTTAATTGCGT
GAATGTGCGGGCCGTGCGATCTTCAGTTCACTCATACCTCTGATCAAATC
AAATCTATCCTCAAATCTATTGAGCTTAAAGCTTGAAGGACTAGAGTGGA
ATCTTCAATATTTCCCAGCAAGAATATATATGAAGCATTTAAGATATGTG
CCGTATTTAAGGCAACGGATTGAATCTATCGTTTTCTTTGTTTTTGAGCG
GCACGTTTTTTTTAATCCTAGCAATAGATGAACTTCGTATCCCAGGCTTT
ATTTTCGTTACTGGTGGACGGACACCAGAAAATATCTTGGTGTTGGCTGA
TGCTTGTCCTCTTCTCTTAAAACAATCAATATGTCATAAATTAAAAATCA
AAGAAGAAATGAAAGCTGACGTTTTGTTTTCGAATCACGTGAATAGTGAA
TCAAAGATTGTATACAAACAACTGGCTTTCGTAGAACACAATGGAATTTC
CAATCACGGTCGCTTCATTATTAGTGACAACTTCATTATTTCTTATTCGC
CATTTCAAAAAAGGGCCGGAAATTAGAAGGTCTTTTTTTCTTCAACTTCT
GAAGAACATGTTCCAAATCTTCAAAGCCATATTTTTTCCGATAGCTTGAT
TGATCGGCGAACGGGATCTAAAAACAGAATGGAAAAAGACATTGAAGTCA
GTGAAGTATGAGAGGCGGTTAAACAAATTATCCGATTCACCCCGGTTATG
CGATTCACCCCGTCTAAACAAAAATATCATTTAAAGATCGAAGTCTAGTA
ATCGAAGGCTAATGGAAGTAATCGAAGTCAAGTAATCGAATTTATCGAAA
CCTAATCGAAGTAATCGAAAGTATTCAAAGCTTATTGAATCTAATCGAAT
TAATCGAAATTTCCAACCTTTTTTTAATCTCAATTAGTTCGATTAGTCTT
CAATGAGTTCGACTAATCGAAGTAATCGCTTCGATTAGTTTCGATTAAAT
TCAATGATTTCGGTAATCGAATTTTTCGATTAGTTACGCCTGGACAAATG
TCTGACCTATCTATCAGTCTAAACTTAAACTCCTATATCAGGATTAGAAA
CAAGGCCAGTCTTACCTCTTTTATCTTTTCCTTTACAACAATACAATATG
TAGACAAGTTGACACAACACCATTTATGTACATGTACATTTATTTATATT
TATATTTGGTTGAGTTGCAGGAGGCTTTGAGGCCTATTTTCGCAACTATA
GACGCTTTCAATGAGCGCCCCATCAGCACCTTGAACTGACTACCCAATTC
TCCTCACATGGCATGGGTTGACCCGGGCGAAGGTTTATTCACTTGTCAAG
TGAACCGCTGCGAGTGGGAATCGAACCTCAGTCACCTGTGCAGCAACCAA
GGTCAATGACCACTATACCACAGCGTCACATTGACAAGTAATCCCTGAGA
GAAGTTTTTATAGAAATCTGCAACAGAAACGAAAGTGGTCTCTTCTACTG
ATTGCTTCCCAGCGCTCCTTAGCAGCTATTAATCAAATTTCCACCAATGA
GGTTGCCGCATTTCAAACAGCCATTCTTTTTGGCACCTGTGGCCTTTTAG
TGCCTTGCCCTTGCACAACGGACGGCTGTAAAATCCCACCCTTCATATAT
TTGTTTCAATAGACCTTTTCGCCTTTCCATTCGCCATCTTGAATTGTATA
TATGCAAAAATAGAGGAACGAAAAAGCCGTGGTTGGATTTAGTTGGAAAA
TATGCAAGTTTATACAAAGATTAAATAAAAAGACAACAAAGCATCTTATA
AAAGAAATATTATAATCATTAGAACAATAAAAGATGGAATTTCTTAATCC
AAAAAGAAATATTTACAGAACAACAAAAGCCATTTAGAAATTTGGTCTTA
AAGACATTGCATATTCTGTTTTTATGCCATTAAAAAATCACACATCTAAC
TTTCAAAATACGCAAACTGAAAGCAGTAATTATGACGTCACACATTCAGT
GGGTTCAGATCAATATTTTGATTAGATCGTTTGGCGGTTCTACATAGTTT
GCACCCCCCCTTTTTAATAGGGGGGGATGCCAACTTTCTGGAGGGCCTTT
GTAGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTGTAGGGGGGGGGTGCCGA
AAAAACTAGGGGGGATGGGAATGTAGGGGGGGATCAAATAAAAAAGGGGG
GGACCTGAAGAACTTTAAACAGAACACACACATTTTGGATTAGATTTTAA
AATGATCAAGATCAATGAAAAACGCTAGTTATATTCTGTCATTGTTGGCT
CGTGACTATAATACTTCATACTCTTTCTTGTTGATAATTTTGCTGGTAGA
TGGGAAAGCGAGTTTCCTTCGAAACGGATTTTCTGTAAAAAAAAAGGGGG
GGATAAGATTTCATTACAAAAGGGGGGATGGGTATATAGGGGGGATGAAA
TAAACCTAGGGGGGTTCACACCCCTCTGCAAACTATGTTCTATTCCCAGG
AGAATAATTTACCGTCAGCCGAATAAGGATTATTTTTGACCTTCGCGGGT
GATTTTTCAGCTTGAGTTTGTGTCTAATGTTATGGTTTTTGAAGTGCTTG
AGATGAGCGAATTTGATTATTTCTAGTTTTCAAAAGAAGCAAATTTAATC
TTTCTTCTACAAGATTATACTTTAATATAATGCCTTAATTATGCACGTAA
GTTTTATATTAATACTTTCTTTTTGCATATGTTTTGCATACTTTCATACC
ATGATTTTTGCATACAATATGGCAGATGGAAAGGCGAAAAGGTCTATCCG
TGATCCGTGGCTTAGGTTTTTCTCATCTTCAATTTACTGAAGAAAGCGGG
AATTTGATGCGAGAGTGAGATTGTCAACAAACTGCTGTAAAAACAGGGGG
GGGCACGCAGTTACTACAAGACAGTATGACACTTACTACCGTGGTGGTAC
TGTATTCAGAAGTTATGAAAACAGTTACTACACAGTGTAGTAACTGCTGT
TTGGGGGTGGTGCCAAACACTAAAAATAGCACTTTTGGTGTAGTAAGTGC
TTATATTTTAATTCTTTTTAAAGAACTTTCAAAATTTTTCACAAAAAATA
AAAAAATTCTTTGTTAAAAAGAATATTTTTGTTATAAATAGACGAAAAAA
AATTTGAAATTTGTCTCAGACCCAACTTTGAAATTATGCTTTCCCTAATT
ATCATTAAAATGTTCTCAACAGCTGTTAACAAAGTAAATTAAAAGAAAAT
CTAGCACAAAAATGGCTTTAGGTTGAAAAATAATTGCAATTTAGGGGAAT
TTCGAGCATGTTTTTGATGATATCACTCAAAAACAGGGGTGGTACCTGGA
AATCTTTTCTGAAAACAGTTACTACCAAGGTGTAGTAACTGCAAAGGGTG
GTGGTCCTGAAAAAAAGTGTTGAAAAAGCACTTACTACACATCATGTCTT
GTAGTAACTGCGTGCCCCCCCCCCCTGGTAAAAAATCATTAGATTAAATC
TTAATTAGATCAAATTTAATAAATGGGGGGGGGGACCTAATTACCGGGGG
TTGGAAAATGGACCTCTAAAAACCCTAAAAAGGTTGAAAATAGAATAAAT
TTTAGGCTTTTTTGAGTAAAACGAGGAACTATTCTTTTGGGTAGCTGGGA
ATTAATAAACGGGGGGTCCTAGCAAGGTTCGGGGAGTTGGAAAAAAATCA
AAAAATTAACAAGCGGGGGGGGCTGTTTATTAGGCACACACCTGGGAGTA
ATATAGGCTACGTCATATCTTCCTTCATTTCAAGCGTAAAACTCCGGAAA
CTCCTACTCTTCGGGCTATGAGCACTGCTCTTGTTTTGAATATTGAAATT
CTCCAGATAAATCGCATGCGCACTGAGGTTTTAATGAAACAATAGAGTTT
CGAAACCTAAGCCAATCAGCTGTGTTTTAAACATTCTTTTATTTAAAATT
TCTATTGATAAACATCTTTTGTGAATGTTGTCTATTATGTTTAAACCTAT
TAATAAGCAATTCCCGGTGGGGGTCACTAGTGGCCGCATATAGCAGTGCC
TATAGACCAAGAGTAAGGCCTAAAAGCCTGGATCTGTCTATTGTGTAGAC
TAAGTGTAATAGTACAGTAAATGAAAATAGAGAGCCAGATATCAACAGTC
CCATCATGTTTCGACCAATCATCTCAAGTTAGAGCAGTTGGACGGTACTT
TTTTTACTTTTCTGCTGATTCAGCATTTTATCATTGGAAAAATTGCCGTT
TTCAGAAATAGTTGCCAAAAAGAGAAATAATTGCCGTTTTTATCTTAAAC
ACCCATCCATTTAATTGGTACCGTCTGGACCAAGGATGAAGCCCTTACTG
CACACTCCAAATCCGGTAATCTTGATATAAAATTTTAAGCCTATACTGGT
AGAGCTGGGAGCAGAACATTTTTTTTGAAATTTTACTGCTTTGATAGACA
GTATAGACTTAAACTCGTATATCAAGATTACGGGATTTCGAGTACAGCCT
GATTTTACTTTCTTTTTGAGTGGTTTCATTTTCGATTTCAAGCCAACATC
TTAGCAACGGGGTGCTTGCCCATAGTTACAGGGGTTTGTGCAAAAAAACA
AAAACAGAAAACTTTCCAAATCCCCCATTTCAATTAAAGCCAATAAGAAA
TGAAACTTTTCCATGTTTCACTTTTTTGCACCAATTCTTCAAAATGAAAA
TATTTGTGATTTTAAGTTCTTCTTTCATGCGGCAATGACAATGATTTTTT
ACGGCACTTTGTTGACAATCTACCTTTTGCATTAAATTTCCGATTTCTTC
AGATAATTGACAGTATAGCCCTAACTGTTCATATAAAAGTTATGAGAAGA
GTATATTTGGACTTTGTATATATCCAATGCTGCACGCAAGCACTTAAGCT
AAAGTCCTGTAAGTTTAAGTTTGCAAAAAGAAATGCCACATAGAAGATTT
TCTAAATTCAATATATGTGAATAGAGCAGTAAAAATACAACTTTTGTATT
CTTCCTTTTTTTTGCAAAAGTTCCAGAAATGGAAATAAAGGGATAATGAT
AATTGAATACTATCCACTGATGATCCGTTGCACTATCGTAAAGCTAGAAT
CGCTTCACATCTCTTCGCTTGAGAAAACGATTGACAGATCAAAGTTTTTC
AACAGCATGGAAGCTCCCAGGGCGTTCTGCAAATTTCTTTTTTCCAACAT
GAAATGAAAATGCGCAATTTGTAGGCAGAAAAACAGCNTGGAAGCTCCCG
GGGCGTTCTGCAAATTTCTTTTTTCCAACATGAAATGAAAATGCGCAATT
TGTATCACACGGCAGAAAACAGAAAATTTCAGTAGAATGACCATTCTGCT
ATATTTATAGGACAAGAATACAAAGACCAGCAGAGACCAGGGGTTATATT
ATAAGCTGGGACTTCCTGAGGCTAAGCTTTTATGGGAATGTTTTTAGTTT
TTCTGAAGGAGATAAAATGGAGGAATCAACCAGTTCAACCTGTTATGATC
ACTCCAAACGAGCGCTACCCATGAATACATCCTGGGAGGGTATACCACCA
ACTGGGTGTGGGGTTACTCGTTTCTTCAAGGACCTTTTTTAAACATGTTT
CCCAGGAAATAGCCAGGAAATAGCCTTCAAATATCTTATTCCTAGAAATG
AAGATTTGTTTCTCCTCAAAACCTTAATTTTTAATCTCAAAGTATCTTCC
CTAGAAAATTTGGTCTGTTCCCACAATTTTCAGAATTAAAATTTTGATAT
GTTGTCCTAAGCTTATATGGAATAGGATATCTGTTTCCCTTTCCTGGAAA
CTTTCATCTGTTTCCCTTGCTTTTTGACGTTGATATCTATTTTCCCCTAG
AAAGTTCAATCTGTTTCCAATGCAATATCATCTTTTTGAAAACAGATATC
TGTTTCCCAATTTATTATGTCATATCCTAGAAATATTGATCTGTTTCTCT
TTGAAGTCATCAGCAGGAGTTTTAAGCAAAAGCTCTTTCCTAGAAAAGGG
AAACATATATTTCAGGAAAATGGGCTCCTTGCCTGCTTCTGTTCTAGTTT
TTTTTATCAAAAACCATTGTGGAATAATGTATCTTTCATGTTTTCTTCCA
GTTCTTGGCTATCTTTGCATTTGCTTGTGCAACTGGTTATAGAGGTAATT
TGAAAATTGACCAAACATCACCTGATGCACAACCCAAGGCACACGATGCA
CAAGGAACCATCCAATATCCATTTTCACAAATACTGGAAATGCCTTTCAT
CAAACCTGGGACCAATGGTACTATGGTAAGTGCTAGTCTTTTTAACTTTT
CATACTTGCTTTTTTAGTGAATCTGCTGGCAATCTGCTGCATTACAGAAT
CCTTGTTTTTTAATGTGTGTTATGCTTGATGAAATATTTTGCCACGTTTG
AAAAAGAACATGGGAATTTCTCTCTCATCTTCGAAAAATTAATCTTCTAA
AAATATTCACAATGAAATTCTTTGGATGGATCCCAATCTGAAATTGATTT
CTCTTTTCTAGCATACCTACACACTAGAAGTTGACCAGAGATCGAAAATT
GAATTTTTCGTCTTCATCGGCGTAATGTGCTTCTTATACAGCTTGGGAAT
GTTGGTGTATTACATTTTCTTCGAAGAGAATAACACAATGAATGCTACTC
CAGTAACATCAAGCTGGTTGTCCCCACCTATCATTGTAAGTTGAGTGCCG
TTACTATGAAAGTTCAGTCGGTGTTATCCACCTGTCACAATGCTAGGGCA
GCCACATGGACGATCTTTGATATCTGATTCGCATTAGAGTCAAAAATTTA
GAAAACTGACATTTTTAGGTCTTTTCAGGCCAATGAATATGCCAACCGCC
AAAAGCATTGCAAATCACCTTTTTCATTTACTGTATATAATATCAATACA
GACAATATACTGACAATATCAGATAACTTTTAAACCAATAAACCCATAAG
TTCAAAATATTTAGAGATTGGAGTCTACAACGAGGTTTCTAAAGAAATCA
AAATGGATTGGATTTTCCTATGTCTGCAATAGCCATAATGAAATTATATC
CATGCTTATGTTGGCCATTTACTTTTTGCTTGTTTCAGGACTTCGGACTC
GGTGCTTTCTGGACATTGTTTTGGTTTTTCAGTGCATGCGCGTTCGCTGC
AGGTGTCAATGCATTAAAAGACCAAGTCAACATTGAAAGTTTGACCGGAG
ATGGAGGGGCATTCGCCGAACCTTGTTCAAACGGCTACAAATGCGGAGGG
ACCAATCCTAAATATGCAACGATGACGGTGGCTATCGTAAGTCGGTCTTC
TTCATAACCCACATATATCTCATATAAAACACTAGATGAAACTTCTCTGT
CCCTATCTTTAATAGAGTCACAATTTTGCTTGTACGTGCGTGCTTGTACG
TGCCTTGAAATTTTGATGTCAAATACTTCAGCAGAGAAAACCAAGGTTTC
TATCGTGGTCCATTGTGGCCTACTTTCTTTCAGCTTCACCTGCCGTGGCT
TGGAAAAGACAAAGTAGTCCTATTTAGTGTTTTATATATGATATATGCAT
TCATTACCCTGGATTAAAAAAAGCAATGCCTAGTGTTTTCAATCCACCAC
GAGGGATATCATCTACGTTTGTTATGTACTTTATCCAATCGATTATCCAA
TCAAAAATTAAGAGCTGGAAAGCAAAGCAATGTTAGGATGTCAAATTGGC
TTCTGGCGAGTGAACCTCCGTTAAAAAGTTACCTAGAAGGCACAAGGGAT
TTTTTCTTAGTGATGACCCCAAAGTATAACTTATGAAATGTCAGTAACCT
ATTTTTCAATTTACTAGTATCAGGAAATGATAATAACTTGAAAATAATAT
CTTTATTATTATCTCATTTTCTAGCTTCTCGGTTTCTTGAACGTGTTTGT
ATGGGCTGGTAACATTTGGTTCTTATATAAAGAAACACCATGGCACAACA
AGTCTCTAGCATCCGCCGGTGCACCTTCGACTGTCCAACAACCACCAAGC
CAACCCGCCGCTGCGGCCATTTAAGCCGACGGCTCCACCATATGAACATT
TTACTCCGCGACCTTATGACAGACAGACCAATGTCCATCTAACGTTAGAT
GAAATTTGAAATAATGTTGTGTGTCAGCTGGGAAAGGTTATCGTCGCTTC
TTTCGGATAATTGTAAAAGTGGATTATGTATTACAACACCCCTCTTTGTC
ATATACATCCAAGCCAGATTCAATAGAGACAGACTTTATTTAACACATTT
TCTGTGTATCTGATAAACATAAATTACAGCCTTTTGTTTTAAAAGATTGA
GCCAGAAAGTCATTTCACCATAAACATGATTTTCTATTAAAAATCTCGAA
CAACCTCTTTGAAAACTCGCTGTAACCTTACAGTTGAAACCTACTTGTTT
CACCTTGTCTATTTCACTCTCGTTTAAACCTTCGTTTATGCATCGCGACT
ATGCTACTTTATTCCGGAAGGCTCGGGAGTAATATTACCAAAAGATGTGT
TTCTATCGTATAAACATTTTGTTGTAGGGCTATAAACCGTTTTATGTATG
AGTTAACTTTAGGAGCTAGTTTTTTATATAAATTATGCTTGAAGTATAAG
TATTTTGGAGTATTTTTTAACATTTTCTTTTTACTTTCAAGGGTATTATT
GACTCGTCTTACTTAGGTAGTCTTTTTGGTTATAACATTACCATTTCACT
TGTGTATTTTTGTATTAAATATCGAGATGTCTTAAAAAATGTTTATTATA
GGCTTCANTGCGGCCATTTAAGCCGACGGCTCCACCATATGAACATTTTA
CTCCGCGACCTTATGACAGACAGACCAATGTCCATCTAACGTTAGATGAA
CGTTGAAATAATGTTGTGTGTCAGCTGGGAAAGGTTATCGTCGCTTCTTT
CGGATAATTGTAAAAGTGGATTATGTATTACAACACCCCTCTTTGTCATA
TACATCCAAGCCAGATTCAATAGAGACAGACTTTATTTAACACATTTTCT
GTGTATCTGATAAACATAAATTACAGCCTTTTGTTTTAAAAGATTGAGCC
AGAAAGTCATTTCACCATAAACATGATTTTCTATTAAAAATCTCGAACAA
CCTCTTTGAAAACTCGCTGTAACCTTACAGTTGAAACCTACTTGTTTCAC
CTTGTCTATTTCACTCTCGTTTAAACCTTCGTTTATGCATCGCGACTATG
CTACTTTATTCCGGGAGGCTCGGGAGTAATATTACCAAAAGATGTGTTTC
TATCGTATAAACATTTTGTTGTAGGGCTATAAACCGTTTTATGTATGAGT
TAACTTTAGGAGCTAGTTTTTTATATATATTATACTTGAAGTATAAGTAT
TTTGGAGTATTTTTTAACATTTTCTTTTTACTTTCAAGGGTATTATTGAC
TCGTCTTACTTAGGTAGTCTTTTTGGTTATAACATTACCATTTCACTTGT
GTATTTTTGTATTAAATATCGAGATGTCTTAAAAAATGTTTATTATAGGC
TTCATTAGAATAGTTTATAAAAATAATGAAAAATTATACATCATAAAAAT
TATTTTCTTTTATAAGGTTAATCTTTTGTTCATTTTTGTTTTAGACAATA
TGTTTTTATTAATAATACAAGACCATATTCACCTCAATTAAATTCAAACC
GCAATTTTATTACCCTGTTCGTAAATTTCTTTAAATATTTGACCTTAGAN
GGATAATTGTAAAAGTGGATTATGTATTACAACACCCCTCTTTGTCATAT
ACATCCAAGCCAGATTCAATAGAGACAGACTTTATTTAACACATTTTCTG
TCTATCTGATAAACATAAATTACAGGCTTTTGTTTTAAAAGATTGAGCCA
GAAAGTCATTTCACCATAAACATGATTTTCTATTAAAAATCTCGAACAAC
CTCTTTGAAAACTCGCTGTAACCTTACAGTTGAAACCTACTTGTTTCACC
TTGTCTATTTCACTCTCGTTTAAACCTTCGTTTATGCATCGCGACTATGC
TACTTTATTCCGGAAGGCTCGGGAGTAATATTACCAAAAGATGTGTTTCT
ATCGTATAAACATTTTGTTGTAGGGCTATAAACCGTTTTATGTATGAGTT
AACTTTAGGAGCTAGTTTTTTATATAAATTATGCTTGAAGTATAAGTATT
TTGGAGTATTTTTTAACATTTTCTTTTTACTTTCAAGGGTATTATTGACT
CGTCTTACTTAGGTAGTCTTTTTGGTTATAACATTACTATTTCACTTGTG
TATTTTTGTATTAAATATCGAGATGTCTTTAAAAATGTTTATTATAGGCA
TCGTTAGAATAGTTTATAAAAATAATGAAAAATTATACATCATAAAAATT
ATTTTCTTTTATAAGGTTAATCTTTTGTTCATTTTTGTTTTAGACAATAT
GTTTTTATTAATAATACAAGACCATATTCACCTCAATTAAATT

Coding sequence (CDS) from alignment at sc0000024:224990..236382-

>TCONS_00002993 ID=TCONS_00002993|Name=TCONS_00002993|organism=Clytia hemisphaerica|type=CDS|length=3810bp|location=Sequence derived from alignment at sc0000024:224990..236382- (Clytia hemisphaerica)
CTTCTCGGTTTCTTGAACGTGTTTGTATGGGCTGGTAACATTTGGTTCTT
ATATAAAGAAACACCATGGCACAACAAGTCTCTAGCATCCGCCGGTGCAC
CTTCGACTGTCCAACAACCACCAAGCCAACCCGCCGCTGCGGCCATTTAA
GACTTCGGACTCGGTGCTTTCTGGACATTGTTTTGGTTTTTCAGTGCATG
CGCGTTCGCTGCAGGTGTCAATGCATTAAAAGACCAAGTCAACATTGAAA
GTTTGACCGGAGATGGAGGGGCATTCGCCGAACCTTGTTCAAACGGCTAC
AAATGCGGAGGGACCAATCCTAAATATGCAACGATGACGGTGGCTATCCA
TACCTACACACTAGAAGTTGACCAGAGATCGAAAATTGAATTTTTCGTCT
TCATCGGCGTAATGTGCTTCTTATACAGCTTGGGAATGTTGGTGTATTAC
ATTTTCTTCGAAGAGAATAACACAATGAATGCTACTCCAGTAACATCAAG
CTGGTTGTCCCCACCTATCATTTTCTTGGCTATCTTTGCATTTGCTTGTG
CAACTGGTTATAGAGGTAATTTGAAAATTGACCAAACATCACCTGATGCA
CAACCCAAGGCACACGATGCACAAGGAACCATCCAATATCCATTTTCACA
AATACTGGAAATGCCTTTCATCAAACCTGGGACCAATGGTACTATGATGA
GATCGAATCCAAATTACGATGTTGTTAAAGAACCTAGAGGTTTCATCAAG
TGTCTAGAAGTGCTTCTCGGTTTCTTGAACGTGTTTGTATGGGCTGGTAA
CATTTGGTTCTTATATAAAGAAACACCATGGCACAACAAGTCTCTAGCAT
CCGCCGGTGCACCTTCGACTGTCCAACAACCACCAAGCCAACCCGCCGCT
GCGGCCATTTAAGACTTCGGACTCGGTGCTTTCTGGACATTGTTTTGGTT
TTTCAGTGCATGCGCGTTCGCTGCAGGTGTCAATGCATTAAAAGACCAAG
TCAACATTGAAAGTTTGACCGGAGATGGAGGGGCATTCGCCGAACCTTGT
TCAAACGGCTACAAATGCGGAGGGACCAATCCTAAATATGCAACGATGAC
GGTGGCTATCCATACCTACACACTAGAAGTTGACCAGAGATCGAAAATTG
AATTTTTCGTCTTCATCGGCGTAATGTGCTTCTTATACAGCTTGGGAATG
TTGGTGTATTACATTTTCTTCGAAGAGAATAACACAATGAATGCTACTCC
AGTAACATCAAGCTGGTTGTCCCCACCTATCATTTTCTTGGCTATCTTTG
CATTTGCTTGTGCAACTGGTTATAGAGGTAATTTGAAAATTGACCAAACA
TCACCTGATGCACAACCCAAGGCACACGATGCACAAGGAACCATCCAATA
TCCATTTTCACAAATACTGGAAATGCCTTTCATCAAACCTGGGACCAATG
GTACTATGATGAGATCGAATCCAAATTACGATGTTGTTAAAGAACCTAGA
GGTTTCATCAAGTGTCTAGAAGTGCTTCTCGGTTTCTTGAACGTGTTTGT
ATGGGCTGGTAACATTTGGTTCTTATATAAAGAAACACCATGGCACAACA
AGTCTCTAGCATCCGCCGGTGCACCTTCGACTGTCCAACAACCACCAAGC
CAACCCGCCGCTGCGGCCATTTAAGACTTCGGACTCGGTGCTTTCTGGAC
ATTGTTTTGGTTTTTCAGTGCATGCGCGTTCGCTGCAGGTGTCAATGCAT
TAAAAGACCAAGTCAACATTGAAAGTTTGACCGGAGATGGAGGGGCATTC
GCCGAACCTTGTTCAAACGGCTACAAATGCGGAGGGACCAATCCTAAATA
TGCAACGATGACGGTGGCTATCCATACCTACACACTAGAAGTTGACCAGA
GATCGAAAATTGAATTTTTCGTCTTCATCGGCGTAATGTGCTTCTTATAC
AGCTTGGGAATGTTGGTGTATTACATTTTCTTCGAAGAGAATAACACAAT
GAATGCTACTCCAGTAACATCAAGCTGGTTGTCCCCACCTATCATTTTCT
TGGCTATCTTTGCATTTGCTTGTGCAACTGGTTATAGAGGTAATTTGAAA
ATTGACCAAACATCACCTGATGCACAACCCAAGGCACACGATGCACAAGG
AACCATCCAATATCCATTTTCACAAATACTGGAAATGCCTTTCATCAAAC
CTGGGACCAATGGTACTATGATGAGATCGAATCCAAATTACGATGTTGTT
AAAGAACCTAGAGGTTTCATCAAGTGTCTAGAAGTGCTTCTCGGTTTCTT
GAACGTGTTTGTATGGGCTGGTAACATTTGGTTCTTATATAAAGAAACAC
CATGGCACAACAAGTCTCTAGCATCCGCCGGTGCACCTTCGACTGTCCAA
CAACCACCAAGCCAACCCGCCGCTGCGGCCATTTAAGACTTCGGACTCGG
TGCTTTCTGGACATTGTTTTGGTTTTTCAGTGCATGCGCGTTCGCTGCAG
GTGTCAATGCATTAAAAGACCAAGTCAACATTGAAAGTTTGACCGGAGAT
GGAGGGGCATTCGCCGAACCTTGTTCAAACGGCTACAAATGCGGAGGGAC
CAATCCTAAATATGCAACGATGACGGTGGCTATCCATACCTACACACTAG
AAGTTGACCAGAGATCGAAAATTGAATTTTTCGTCTTCATCGGCGTAATG
TGCTTCTTATACAGCTTGGGAATGTTGGTGTATTACATTTTCTTCGAAGA
GAATAACACAATGAATGCTACTCCAGTAACATCAAGCTGGTTGTCCCCAC
CTATCATTTTCTTGGCTATCTTTGCATTTGCTTGTGCAACTGGTTATAGA
GGTAATTTGAAAATTGACCAAACATCACCTGATGCACAACCCAAGGCACA
CGATGCACAAGGAACCATCCAATATCCATTTTCACAAATACTGGAAATGC
CTTTCATCAAACCTGGGACCAATGGTACTATGATGAGATCGAATCCAAAT
TACGATGTTGTTAAAGAACCTAGAGGTTTCATCAAGTGTCTAGAAGTGCT
TCTCGGTTTCTTGAACGTGTTTGTATGGGCTGGTAACATTTGGTTCTTAT
ATAAAGAAACACCATGGCACAACAAGTCTCTAGCATCCGCCGGTGCACCT
TCGACTGTCCAACAACCACCAAGCCAACCCGCCGCTGCGGCCATTTAAGA
CTTCGGACTCGGTGCTTTCTGGACATTGTTTTGGTTTTTCAGTGCATGCG
CGTTCGCTGCAGGTGTCAATGCATTAAAAGACCAAGTCAACATTGAAAGT
TTGACCGGAGATGGAGGGGCATTCGCCGAACCTTGTTCAAACGGCTACAA
ATGCGGAGGGACCAATCCTAAATATGCAACGATGACGGTGGCTATCCATA
CCTACACACTAGAAGTTGACCAGAGATCGAAAATTGAATTTTTCGTCTTC
ATCGGCGTAATGTGCTTCTTATACAGCTTGGGAATGTTGGTGTATTACAT
TTTCTTCGAAGAGAATAACACAATGAATGCTACTCCAGTAACATCAAGCT
GGTTGTCCCCACCTATCATTTTCTTGGCTATCTTTGCATTTGCTTGTGCA
ACTGGTTATAGAGGTAATTTGAAAATTGACCAAACATCACCTGATGCACA
ACCCAAGGCACACGATGCACAAGGAACCATCCAATATCCATTTTCACAAA
TACTGGAAATGCCTTTCATCAAACCTGGGACCAATGGTACTATGATGAGA
TCGAATCCAAATTACGATGTTGTTAAAGAACCTAGAGGTTTCATCAAGTG
TCTAGAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001640XLOC_001640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002993-exon-sc0000024-1575043694:236008..236382TCONS_00002993-exon-sc0000024-1575043694:236008..236382Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1575043694:229158..229331TCONS_00002993-exon-sc0000024-1575043694:229158..229331Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1575043694:228748..228921TCONS_00002993-exon-sc0000024-1575043694:228748..228921Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1575043694:228147..228344TCONS_00002993-exon-sc0000024-1575043694:228147..228344Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1575043694:224990..227558TCONS_00002993-exon-sc0000024-1575043694:224990..227558Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1510915933:236008..236382TCONS_00002993-exon-sc0000024-1510915933:236008..236382Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1510915933:229158..229331TCONS_00002993-exon-sc0000024-1510915933:229158..229331Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1510915933:228748..228921TCONS_00002993-exon-sc0000024-1510915933:228748..228921Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1510915933:228147..228344TCONS_00002993-exon-sc0000024-1510915933:228147..228344Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1510915933:224990..227558TCONS_00002993-exon-sc0000024-1510915933:224990..227558Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1491911889:236008..236382TCONS_00002993-exon-sc0000024-1491911889:236008..236382Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1491911889:229158..229331TCONS_00002993-exon-sc0000024-1491911889:229158..229331Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1491911889:228748..228921TCONS_00002993-exon-sc0000024-1491911889:228748..228921Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1491911889:228147..228344TCONS_00002993-exon-sc0000024-1491911889:228147..228344Clytia hemisphaericaexon
TCONS_00002993-exon-sc0000024-1491911889:224990..227558TCONS_00002993-exon-sc0000024-1491911889:224990..227558Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002993-proteinTCONS_00002993-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:224990..236382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
101.794	101.311	143.33	154.001	107.936	81.7322	78.4625	81.7721	69.1326	85.5529	77.8579	49.654	43.1631	41.6885	47.708	58.545	70.4829	61.7761	21.1155	30.6599	44.4534	47.3636	62.3995	58.9845	27.5959	33.7362	48.1429	39.0528	60.8845	53.2399
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001285Synaptophysin/porin
IPR008253Marvel
IPR013833Cyt_c_oxidase_su3_a-hlx
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0008021synaptic vesicle
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0022904respiratory electron transport chain
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022904 respiratory electron transport chain
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
cellular_component GO:0008021 synaptic vesicle
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00002993 vs. Swiss-Prot (Human)
Match: SYPH (Synaptophysin OS=Homo sapiens GN=SYP PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.374e-27
Identity = 75/248 (30.24%), Postives = 119/248 (47.98%), Query Frame = 1 
Query:  289 DLKITQEMRSNPNYDVVKEPRGFIKCLEVFLAIFAFACATGYRGNLKIDQTSPDAQPKAHDAQGTIQYPFSQILEMPFIKPGTNGTMHTYTLEVDQRSKIEFFVFIGVMCFLYSLGMLVYYIFFEENNTMNATPVTSSWLSPPIIDFGLGAFWTLFWFFSACAFAAGVNALKDQVNIESLTGDGGAFAEPCSNGYKCGG-TNPKYATMTVAILLGFLNVFVWAGNIWFLYKETPWHNKSL-ASAGAPS 1026
            D+ +  ++ +   + VVKEP GF+K L+   AIFAFA    Y G L++     +        +   +YPF ++ ++ F  P   G      L  D  S  EFFV + V  FLYS+G L  YIF +     N           P++DF   A +   W  S+ A+A G++ +K   + E++  +     +    G  C    +P  + +  +++ GFLN+ +W GN+WF++KET W    L A  GAP 
Sbjct:    6 DMDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSIEVEFEYPF-RLHQVYFDAPTCRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIFLQNKYRENN--------KGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVCRQ---TGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPE 241
The following BLAST results are available for this feature:
BLAST of TCONS_00002993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYPH2.374e-2730.24Synaptophysin OS=Homo sapiens GN=SYP PE=1 SV=3[more]
back to top