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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003038 ID=TCONS_00003038|Name=TCONS_00003038|organism=Clytia hemisphaerica|type=transcript|length=1812bp
AATATTTGCCGTGTGTTCTACGTTTTCTAGTGTTCGAAACGTTATCGCAT
AGAGCACCTAGATAAATTTCACAAGGTCTTAAAgtcaaagaaatgaaaat
gtatttaagaaatttcaaaatgcaaGATGAGCTAAAAAAAACCTCTTAGA
CTAACAAATTCTATGGAAATATTACTACTATAAACTtctaaataactttt
taaatatcttttattTACATTAAAACTAAACGTcgcatgaaaaatatttt
aaaatctaTCTATCTATGTACATATTGACAAATTTTAGGTTACTGGTTCG
ACTGTGAAAAtagttcaatctttttttttaataatatttgaaaaattatg
ataaaattgtAGTAAAACTCtagatttttcattcaaaaaaatattaaact
aaatgACGAGGAACAttttattttggatttttgataattttgagtCAAAT
TCACATGAGCAAAACGGTTTATTTACGTAGTGCAAATTACTGTCACAacg
gttttgaatttttgaaatttaaaggtTCCAGAAACAAGAATTCATGATAT
GCGCCATTGCAATGTCTtctgacattacatcacggacccaacagctgatt
ggctgtaagtgacgtaaaatcagtcaatacgtcactttcaaccaatcagc
tgttgggtacgtggaagacattgcaatggtgcatatcatgaatacaaaaG
ACTCTCCTTTTCCAGGAGAAAACAGttcttaaaactcaaaactGAGGCAC
TATAACACAAGATATTAATTTCCTTTTGGGGTTGACTTTCTAAAGCATGT
CCGACATTTCAGACGAGAGNGTATAATCAGGCGGCATTTGACATTCAATA
ATCCGCCCACTATCCGTCCTTCTAACCGTCTCAGCATAACTCGGTAACTT
CAAATTAAACACATATCGCCTCATAGCAATCGATAAATTCCCGTAATAAT
CGTCATCCGCGTTTGACGcactatccaaggagctagtCTCTAAAATAGAC
TGTGAGCCATGCTGCTCGTTATAAGCCTTCCTTGCCATCGCGTATAAATA
CATTGTGCAAGCCATAGTAGCGATTGCAATAGCAACTCCGATGCATACAA
GCCATAACGGTCCGATTAAAACACCGACTAAGAATACGGACACAGCCATT
AGTAAACATAACGGAACAGTGATCCGGGCGAATATAGATCCGGAACACAT
GAGTGAGTTTTTGATGCCTCCACTAgcattgttgttgttgttgtcgttaG
ACATTCTGTCTCGTAAAAACCAACCAAAAAAGTAATTCAACAAGACATAT
ACGAAACATATAAAACAgactctataattcgatttCTTATCCACGCTTTT
GATAAAAATCAGTCTTCCACAACTTTACAATAATTTTCCATCCAGCGACA
GTATAATAACGAAAAAGCTGTTATTATTGTTTTGGAGTTCTCAGTTTTCC
AGTGACGTGCGAATTTAGATCATTGATTAATTCTCTTTGGTTTGTTTACG
TGTGTACACACTGGTCCAACTAAAAagtgtttttgttgttgttgttctaA
TTCTTTCCTGTTCAAACGTTCCAGATGAAGTCAAGACACTtcaaatgtct
tctttttttaaaatctaAGTTGAAACCTTGTTTTTGATACCGTCGGGTTG
ATTCtacttccttgagtttttagtTGAAGATgcttttcttgtttttcctt
tttctggtTGGTATTTattttactaaaagaaagcaTGTGAATTTATTTGC
TTGTTAACATGTGGGTATCCCTCAAATCTCtgtttttcgttttttccttg
ttcttttttctc Run BLAST on NCBI protein sequence of TCONS_00003038-protein >TCONS_00003038-protein ID=TCONS_00003038-protein|Name=TCONS_00003038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MSNDNNNNNASGGIKNSLMCSGSIFARITVPLCLLMAVSVFLVGVLIGPL
WLVCIGVAIAIATMACTMYLYAMARKAYNEQHGSQSILETSSLDSASNAD
DDYYGNLSIAMRRYVFNLKLPSYAETVRRTDSGRIIECQMPPDYXLSSEM
SDML Run BLAST on NCBI transcript from alignment at sc0000024:277298..279109 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003038 ID=TCONS_00003038|Name=TCONS_00003038|organism=Clytia hemisphaerica|type=transcript|length=1812bp|location=Sequence derived from alignment at sc0000024:277298..279109 (Clytia hemisphaerica)
gagaaaaaagaacaaggaaaaaacgaaaaacaGAGATTTGAGGGATACCC
ACATGTTAACAAGCAAATAAATTCACAtgctttcttttagtaaaatAAAT
ACCAaccagaaaaaggaaaaacaagaaaagcATCTTCAactaaaaactca
aggaagtaGAATCAACCCGACGGTATCAAAAACAAGGTTTCAACTtagat
tttaaaaaaagaagacatttgaAGTGTCTTGACTTCATCTGGAACGTTTG
AACAGGAAAGAATtagaacaacaacaacaaaaacactTTTTAGTTGGACC
AGTGTGTACACACGTAAACAAACCAAAGAGAATTAATCAATGATCTAAAT
TCGCACGTCACTGGAAAACTGAGAACTCCAAAACAATAATAACAGCTTTT
TCGTTATTATACTGTCGCTGGATGGAAAATTATTGTAAAGTTGTGGAAGA
CTGATTTTTATCAAAAGCGTGGATAAGaaatcgaattatagagtcTGTTT
TATATGTTTCGTATATGTCTTGTTGAATTACTTTTTTGGTTGGTTTTTAC
GAGACAGAATGTCtaacgacaacaacaacaacaatgcTAGTGGAGGCATC
AAAAACTCACTCATGTGTTCCGGATCTATATTCGCCCGGATCACTGTTCC
GTTATGTTTACTAATGGCTGTGTCCGTATTCTTAGTCGGTGTTTTAATCG
GACCGTTATGGCTTGTATGCATCGGAGTTGCTATTGCAATCGCTACTATG
GCTTGCACAATGTATTTATACGCGATGGCAAGGAAGGCTTATAACGAGCA
GCATGGCTCACAGTCTATTTTAGAGactagctccttggatagtgCGTCAA
ACGCGGATGACGATTATTACGGGAATTTATCGATTGCTATGAGGCGATAT
GTGTTTAATTTGAAGTTACCGAGTTATGCTGAGACGGTTAGAAGGACGGA
TAGTGGGCGGATTATTGAATGTCAAATGCCGCCTGATTATACNCTCTCGT
CTGAAATGTCGGACATGCTTTAGAAAGTCAACCCCAAAAGGAAATTAATA
TCTTGTGTTATAGTGCCTCagttttgagttttaagaaCTGTTTTCTCCTG
GAAAAGGAGAGTCttttgtattcatgatatgcaccattgcaatgtcttcc
acgtacccaacagctgattggttgaaagtgacgtattgactgattttacg
tcacttacagccaatcagctgttgggtccgtgatgtaatgtcagaAGACA
TTGCAATGGCGCATATCATGAATTCTTGTTTCTGGAacctttaaatttca
aaaattcaaaaccgtTGTGACAGTAATTTGCACTACGTAAATAAACCGTT
TTGCTCATGTGAATTTGactcaaaattatcaaaaatccaaaataaaaTGT
TCCTCGTcatttagtttaatatttttttgaatgaaaaatctaGAGTTTTA
CTacaattttatcataatttttcaaatattattaaaaaaaaagattgaac
taTTTTCACAGTCGAACCAGTAACCTAAAATTTGTCAATATGTACATAGA
TAGAtagattttaaaatatttttcatgcgACGTTTAGTTTTAATGTAaat
aaaagatatttaaaaagttatttagaAGTTTATAGTAGTAATATTTCCAT
AGAATTTGTTAGTCTAAGAGGTTTTTTTTAGCTCATCttgcattttgaaa
tttcttaaatacattttcatttctttgacTTTAAGACCTTGTGAAATTTA
TCTAGGTGCTCTATGCGATAACGTTTCGAACACTAGAAAACGTAGAACAC
ACGGCAAATATT Coding sequence (CDS) from alignment at sc0000024:277298..279109 >TCONS_00003038 ID=TCONS_00003038|Name=TCONS_00003038|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000024:277298..279109 (Clytia hemisphaerica)
ATGTCtaacgacaacaacaacaacaatgcTAGTGGAGGCATCAAAAACTC
ACTCATGTGTTCCGGATCTATATTCGCCCGGATCACTGTTCCGTTATGTT
TACTAATGGCTGTGTCCGTATTCTTAGTCGGTGTTTTAATCGGACCGTTA
TGGCTTGTATGCATCGGAGTTGCTATTGCAATCGCTACTATGGCTTGCAC
AATGTATTTATACGCGATGGCAAGGAAGGCTTATAACGAGCAGCATGGCT
CACAGTCTATTTTAGAGactagctccttggatagtgCGTCAAACGCGGAT
GACGATTATTACGGGAATTTATCGATTGCTATGAGGCGATATGTGTTTAA
TTTGAAGTTACCGAGTTATGCTGAGACGGTTAGAAGGACGGATAGTGGGC
GGATTATTGAATGTCAAATGCCGCCTGATTATACNCTCTCGTCTGAAATG
TCGGACATGCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003038-exon-sc0000024-1491911889:277298..279109 | TCONS_00003038-exon-sc0000024-1491911889:277298..279109 | Clytia hemisphaerica | exon |
| TCONS_00003038-exon-sc0000024-1510915933:277298..279109 | TCONS_00003038-exon-sc0000024-1510915933:277298..279109 | Clytia hemisphaerica | exon |
| TCONS_00003038-exon-sc0000024-1575043694:277298..279109 | TCONS_00003038-exon-sc0000024-1575043694:277298..279109 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:277298..279109 . |
Blast
The following BLAST results are available for this feature:
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