TCONS_00003039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003039
Unique NameTCONS_00003039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003039 ID=TCONS_00003039|Name=TCONS_00003039|organism=Clytia hemisphaerica|type=transcript|length=347bp
GCGATCTCTAAACTCCGTCACTATCTCCCTCTTCCAAACCTTATCAACGT
CTACCATGCTATCTTCTCCTCTCACATTCGCTATGCTTGTCAAACTTGGG
GCCTCTGTGATAACACTGTCACCCACAGAATCCAAGTCCTACAAAATACT
GCTATCAGGATTATGACCTTCCAAGGACCAAGGGCCTCTGTCACTCCCAC
CTATAATGaactcaaaatcttaaaattcttTGATCTCGTTGAAACACTCA
ATATTACGTTCGTATACCGCTACCTGAACAGATACCTTCCTTCTGACTGT
CTTTCTACTTTTACCTTTTCTGTAATTCCTCATGACATTGGGACTAG
Run BLAST on NCBI

transcript from alignment at sc0000024:301323..301669

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003039 ID=TCONS_00003039|Name=TCONS_00003039|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0000024:301323..301669 (Clytia hemisphaerica)
CTAGTCCCAATGTCATGAGGAATTACAGAAAAGGTAAAAGTAGAAAGACA
GTCAGAAGGAAGGTATCTGTTCAGGTAGCGGTATACGAACGTAATATTGA
GTGTTTCAACGAGATCAaagaattttaagattttgagttCATTATAGGTG
GGAGTGACAGAGGCCCTTGGTCCTTGGAAGGTCATAATCCTGATAGCAGT
ATTTTGTAGGACTTGGATTCTGTGGGTGACAGTGTTATCACAGAGGCCCC
AAGTTTGACAAGCATAGCGAATGTGAGAGGAGAAGATAGCATGGTAGACG
TTGATAAGGTTTGGAAGAGGGAGATAGTGACGGAGTTTAGAGATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001670XLOC_001670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003039-exon-sc0000024-1491911889:301323..301669TCONS_00003039-exon-sc0000024-1491911889:301323..301669Clytia hemisphaericaexon
TCONS_00003039-exon-sc0000024-1510915933:301323..301669TCONS_00003039-exon-sc0000024-1510915933:301323..301669Clytia hemisphaericaexon
TCONS_00003039-exon-sc0000024-1575043694:301323..301669TCONS_00003039-exon-sc0000024-1575043694:301323..301669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:301323..301669 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.18627	1.74095	2.41582	1.79346	1.36981	0.661045	0.309431	0.284056	1.07338	1.98078	1.61217	0.86067	1.06538	1.80349	1.2805	0.964962	0.203687	1.13076	1.29448	1.81665	0.867488	0	1.40307	0.331644	1.23171	0	2.295	0	0.58144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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