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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003042 ID=TCONS_00003042|Name=TCONS_00003042|organism=Clytia hemisphaerica|type=transcript|length=1789bp
CATAGGTCATATCTAATTTCTCGCTTCCTTTACTTATCCCATTGTATCCA
CTGAAGTGTGGAGTAATAAGTTATGCAATAGACCGTTGTGGTCTCCCAAG
AAACTATTATAATCTTTTTTTCCCTCTGATGAATGCAATAGTTGTTTAGG
AGAACGCGATAGtctgaataacaaattactctaaatcatcttgtctctag
gtaccgtcaactgctctaacttgggacgattggtcaaaacatgggactgt
tgatattctggtctgtattttcacttactgttaaatctctttgacaacaa
gtttgttttgctaCCTAGCCACCAAGTtaatcaatcatactttctgtcat
aacatgtcacgataactttcactgatagatagcgcgccctttttaacttt
ttttttattcaaaatgaccagacgccgattggagaataaGAGAATGCCCA
CTGCCTAACCGCTTTAtcgcctgatgggattaacaaatatgAGTATTTAA
CTTGccacgcgagtgacgtcaaacgctccattgttttgccactaACTTGG
TCTTCTTTTTTCCAGACATTTGCATGTGTTCCACTatgggatttttttca
tatttcgatttaaagcctactcggtgcgaaagagaaatcatgtatttttt
aatacgtccttcattaactcaaatcaaatgactttctgactttggaggtt
tggtgaaatggtggctgaattgctgtttgtcagatagtcccaagttagag
cagttgacggtaactggtaacagctgtgttgtaaaagacaaatcaattat
tATATGACATTATCATACTATAAAAATGTATGCTGGAATTGTCAGTTATT
CAAAAGAGCGTGGCGTTCTTCGAAAAGACTGTCTCCTGGATTTCAGATAA
TGACATGACCCCTGAATCCTTCAATGATTGTGTAATTCTAGAAAAATGTA
TGAAAAAGCCCCTCTATGGAAAATTATAatcagaaatcttcaaaaccCTG
TTTATCACCACATCAAAAGCTAGGAGAAGGAGAGGTAAGGAGAAGTCTAC
AATCAAACCCTTCTCCATGACCATCATTCTCCCCCAAACCATCAGGTTGT
ATTTAGCTATTTCAGGTGTCAGgttcttgtttttgtttgtcaaaGGGTAC
CTTGTCACAGGGACAGACTGTTGACAACACCGATAGactatcttactata
ctaaaatCAAAATGCAAGAAACAAGAAATGTGTTTATACCTTTACATCAT
ACTTTTTATGGATGTGACCGTGTATTGTTGGAATAATATTTGGTTATGAA
GTAGGCAGAATTACAGAACAAACACGGTTATAGTCATGTCATAACTGCTC
AAAGTGCTGACTCAACATCCAGACAACACAACCCACttctaaattttaat
ttttccaatgTTGTTTTGATATGACTGGACACACTTACTTAGAAATAACC
AATCtcgtttataaaaaaaacttattacgGAAACTCGACCACggaacata
aacaaaaacaaacccaTGTGGAAAGCTGAAAACAGCGTGCTTCTTCATTC
TTCGTGCTACTATTTTTCACCTCACCAGCTCACTGCACAGACACAGACAA
CACAGAAGAGGGTCCTGATAGCACAGTGAAGATATCGACACAAAAGGTAC
TGGTAgtcttttttccaattttgatatttcttccCAAATCTACCTTAACC
AGCTGTAGCTTAACATAAAGAAGGTAGAAACTAGGGGAACTTTTCTTTTG
TACAGATATCGATATATTTAGCTACATGCTAGAAATATT Run BLAST on NCBI transcript from alignment at sc0000024:354859..356647 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003042 ID=TCONS_00003042|Name=TCONS_00003042|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at sc0000024:354859..356647 (Clytia hemisphaerica)
AATATTTCTAGCATGTAGCTAAATATATCGATATCTGTACAAAAGAAAAG
TTCCCCTAGTTTCTACCTTCTTTATGTTAAGCTACAGCTGGTTAAGGTAG
ATTTGggaagaaatatcaaaattggaaaaaagacTACCAGTACCTTTTGT
GTCGATATCTTCACTGTGCTATCAGGACCCTCTTCTGTGTTGTCTGTGTC
TGTGCAGTGAGCTGGTGAGGTGAAAAATAGTAGCACGAAGAATGAAGAAG
CACGCTGTTTTCAGCTTTCCACAtgggtttgtttttgtttatgttccGTG
GTCGAGTTTCcgtaataagttttttttataaacgaGATTGGTTATTTCTA
AGTAAGTGTGTCCAGTCATATCAAAACAAcattggaaaaattaaaattta
gaaGTGGGTTGTGTTGTCTGGATGTTGAGTCAGCACTTTGAGCAGTTATG
ACATGACTATAACCGTGTTTGTTCTGTAATTCTGCCTACTTCATAACCAA
ATATTATTCCAACAATACACGGTCACATCCATAAAAAGTATGATGTAAAG
GTATAAACACATTTCTTGTTTCTTGCATTTTGattttagtatagtaagat
agtCTATCGGTGTTGTCAACAGTCTGTCCCTGTGACAAGGTACCCtttga
caaacaaaaacaagaacCTGACACCTGAAATAGCTAAATACAACCTGATG
GTTTGGGGGAGAATGATGGTCATGGAGAAGGGTTTGATTGTAGACTTCTC
CTTACCTCTCCTTCTCCTAGCTTTTGATGTGGTGATAAACAGggttttga
agatttctgatTATAATTTTCCATAGAGGGGCTTTTTCATACATTTTTCT
AGAATTACACAATCATTGAAGGATTCAGGGGTCATGTCATTATCTGAAAT
CCAGGAGACAGTCTTTTCGAAGAACGCCACGCTCTTTTGAATAACTGACA
ATTCCAGCATACATTTTTATAGTATGATAATGTCATATaataattgattt
gtcttttacaacacagctgttaccagttaccgtcaactgctctaacttgg
gactatctgacaaacagcaattcagccaccatttcaccaaacctccaaag
tcagaaagtcatttgatttgagttaatgaaggacgtattaaaaaatacat
gatttctctttcgcaccgagtaggctttaaatcgaaatatgaaaaaaatc
ccatAGTGGAACACATGCAAATGTCTGGAAAAAAGAAGACCAAGTtagtg
gcaaaacaatggagcgtttgacgtcactcgcgtggCAAGTTAAATACTca
tatttgttaatcccatcaggcgaTAAAGCGGTTAGGCAGTGGGCATTCTC
ttattctccaatcggcgtctggtcattttgaataaaaaaaaagttaaaaa
gggcgcgctatctatcagtgaaagttatcgtgacatgttatgacagaaag
tatgattgattaACTTGGTGGCTAGGtagcaaaacaaacttgttgtcaaa
gagatttaacagtaagtgaaaatacagaccagaatatcaacagtcccatg
ttttgaccaatcgtcccaagttagagcagttgacggtacctagagacaag
atgatttagagtaatttgttattcagaCTATCGCGTTCTCCTAAACAACT
ATTGCATTCATCAGAGGGAAAAAAAGATTATAATAGTTTCTTGGGAGACC
ACAACGGTCTATTGCATAACTTATTACTCCACACTTCAGTGGATACAATG
GGATAAGTAAAGGAAGCGAGAAATTAGATATGACCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003042-exon-sc0000024-1491911889:354859..356647 | TCONS_00003042-exon-sc0000024-1491911889:354859..356647 | Clytia hemisphaerica | exon |
| TCONS_00003042-exon-sc0000024-1510915933:354859..356647 | TCONS_00003042-exon-sc0000024-1510915933:354859..356647 | Clytia hemisphaerica | exon |
| TCONS_00003042-exon-sc0000024-1575043694:354859..356647 | TCONS_00003042-exon-sc0000024-1575043694:354859..356647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:354859..356647 . |
Blast
The following BLAST results are available for this feature:
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