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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003043 ID=TCONS_00003043|Name=TCONS_00003043|organism=Clytia hemisphaerica|type=transcript|length=1010bp
GCGGCatagacaaaaattttcaacaggGTCGAAAAAAGAGCTTTAAATTA
TGTTATGGATATACAATAATTCACTTGAATGGATatttattggttaaaaa
gatttaatagtaaaaaaaacattttctatttACAAAAGTCATAGTTAAAA
ATTATTGATGAAATATATCATAATTTGGTACCGTATGGCTTTAACAGGTG
TTTGTTATCATTGAGATATTTTGTAACTTTTGTTTTGCAATCTCCTTGTA
ATTCAATAAAATCACCGTGATTAACACCACCAGTTCCTAGTTTTGTCTTC
AATTCTTGAAGAATAACTTTATTGTTTCCTAGAACATGCTCAATGATGGT
AACTTTTTTCCCACTTGATCGGTTCTCAACTTTCACTGGTATTCCACCTT
TCTTTGTCCTGCAAACATACACAGGTGTACTTTCAATTGTATCAGCTGGC
AAAGCACATGCACCTTGATTCGAATTAGTAGCAGTTTCATCAGATATTTT
AGCCTCAGTGTCTGTCTTGTCTTTTCCTGCAGTCTTTTTCAGAACaagaa
aatctccaaaagtCAAATGATTTGGTCTTCCTTCATGAGGATCTTTTTGC
tcctcatttttcttttttttgggcATTGATAATCACTGATGTGGCTTATT
TCTATTTATGGTCCAACTATTGTCATttaattttggaattgaaaaaattt
aactACAGGAGCCTGCCCAGATATATTTCCACATAAAACAAAGATCTTTG
AATAGTGTTTAATTCATAAACCAACAAGAAATAAGAGGATGTGCTTAGGG
CAGAATCGAGAAAAAAAGCTTGCACCTTATcttacaaaatattttaaact
caAGTAACCTTTAGTGAATTACTATTGTCCTGTTCAggacaaaatatttc
tattcatccttttgtatttaaatCATTGTCATGAAATTATATTGAATAGT
GCTCGATGATATCACATATCTTGTACATTTGAACAAGTGCAGAAGCACAA
GACTTTAAGT Run BLAST on NCBI protein sequence of TCONS_00003043-protein >TCONS_00003043-protein ID=TCONS_00003043-protein|Name=TCONS_00003043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MPKKKKNEEQKDPHEGRPNHLTFGDFLVLKKTAGKDKTDTEAKISDETAT
NSNQGACALPADTIESTPVYVCRTKKGGIPVKVENRSSGKKVTIIEHVLG
NNKVILQELKTKLGTGGVNHGDFIELQGDCKTKVTKYLNDNKHLLKPYGT
KL Run BLAST on NCBI transcript from alignment at sc0000024:408683..409692 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003043 ID=TCONS_00003043|Name=TCONS_00003043|organism=Clytia hemisphaerica|type=transcript|length=1010bp|location=Sequence derived from alignment at sc0000024:408683..409692 (Clytia hemisphaerica)
ACTTAAAGTCTTGTGCTTCTGCACTTGTTCAAATGTACAAGATATGTGAT
ATCATCGAGCACTATTCAATATAATTTCATGACAATGatttaaatacaaa
aggatgaatagaaatattttgtccTGAACAGGACAATAGTAATTCACTAA
AGGTTACTtgagtttaaaatattttgtaagATAAGGTGCAAGCTTTTTTT
CTCGATTCTGCCCTAAGCACATCCTCTTATTTCTTGTTGGTTTATGAATT
AAACACTATTCAAAGATCTTTGTTTTATGTGGAAATATATCTGGGCAGGC
TCCTGTagttaaattttttcaattccaaaattaaATGACAATAGTTGGAC
CATAAATAGAAATAAGCCACATCAGTGATTATCAATgcccaaaaaaaaga
aaaatgaggaGCAAAAAGATCCTCATGAAGGAAGACCAAATCATTTGact
tttggagattttcttGTTCTGAAAAAGACTGCAGGAAAAGACAAGACAGA
CACTGAGGCTAAAATATCTGATGAAACTGCTACTAATTCGAATCAAGGTG
CATGTGCTTTGCCAGCTGATACAATTGAAAGTACACCTGTGTATGTTTGC
AGGACAAAGAAAGGTGGAATACCAGTGAAAGTTGAGAACCGATCAAGTGG
GAAAAAAGTTACCATCATTGAGCATGTTCTAGGAAACAATAAAGTTATTC
TTCAAGAATTGAAGACAAAACTAGGAACTGGTGGTGTTAATCACGGTGAT
TTTATTGAATTACAAGGAGATTGCAAAACAAAAGTTACAAAATATCTCAA
TGATAACAAACACCTGTTAAAGCCATACGGTACCAAATTATGATATATTT
CATCAATAATTTTTAACTATGACTTTTGTaaatagaaaatgtttttttta
ctattaaatctttttaaccaataaatATCCATTCAAGTGAATTATTGTAT
ATCCATAACATAATTTAAAGCTCTTTTTTCGACcctgttgaaaatttttg
tctatGCCGC Coding sequence (CDS) from alignment at sc0000024:408683..409692 >TCONS_00003043 ID=TCONS_00003043|Name=TCONS_00003043|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000024:408683..409692 (Clytia hemisphaerica)
ATgcccaaaaaaaagaaaaatgaggaGCAAAAAGATCCTCATGAAGGAAG
ACCAAATCATTTGacttttggagattttcttGTTCTGAAAAAGACTGCAG
GAAAAGACAAGACAGACACTGAGGCTAAAATATCTGATGAAACTGCTACT
AATTCGAATCAAGGTGCATGTGCTTTGCCAGCTGATACAATTGAAAGTAC
ACCTGTGTATGTTTGCAGGACAAAGAAAGGTGGAATACCAGTGAAAGTTG
AGAACCGATCAAGTGGGAAAAAAGTTACCATCATTGAGCATGTTCTAGGA
AACAATAAAGTTATTCTTCAAGAATTGAAGACAAAACTAGGAACTGGTGG
TGTTAATCACGGTGATTTTATTGAATTACAAGGAGATTGCAAAACAAAAG
TTACAAAATATCTCAATGATAACAAACACCTGTTAAAGCCATACGGTACC
AAATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003043-exon-sc0000024-1491911889:408683..409692 | TCONS_00003043-exon-sc0000024-1491911889:408683..409692 | Clytia hemisphaerica | exon |
| TCONS_00003043-exon-sc0000024-1510915933:408683..409692 | TCONS_00003043-exon-sc0000024-1510915933:408683..409692 | Clytia hemisphaerica | exon |
| TCONS_00003043-exon-sc0000024-1575043694:408683..409692 | TCONS_00003043-exon-sc0000024-1575043694:408683..409692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:408683..409692 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001950 | SUI1 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006413 | translational initiation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003743 | translation initiation factor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006413 |
translational initiation |
| molecular_function |
GO:0003743 |
translation initiation factor activity |
Blast
The following BLAST results are available for this feature:
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