TCONS_00003063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003063
Unique NameTCONS_00003063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003063 ID=TCONS_00003063|Name=TCONS_00003063|organism=Clytia hemisphaerica|type=transcript|length=691bp
AGAAAATGAGACAATTACTAGCTTTGCCAATTGGCAATCGAACATTATGT
ACCACCTTTCATTAAACAATGATTTCGGCCAATTTTTAGATTCAAATTGG
TCTAAAAAATCCATACTGAACCGTGGTTTGCAAGCTGTAGGAGACAAAAC
ACCTCTCCAAAGGAATATCATTTTAGAACGCATGCTTGCACTCATCGCCC
AATTCGTCCCTTCGCTACTCAGGAACGATATCGTCAAGAAAAGCACCAGT
CTCAACTGGATATGGCAACGCATCCGTAAACATTATTCGTTCGCCCAATC
AGAAGTGAACTTCCTTAAGCTTTCAAATATTAAACGTGACAGCGATGAAC
GTTATGAGACATTCTTCCAAAGGATTATTGCCAACTTGGAGGACAACCTC
CTCACTGTGGAATCAGGTTTAATTCACGATGGCGCTGCACCAACAGCTAA
TGAAGAAATGTCACCAACACTAGAACGCTTAGCAGTATATATGTGGTTAA
CGTTAATAGACGAACGCCTCCCAGCACATGTTTCGAGAGTTTACGCCCAC
GACCTACAATCAAAGACTCTTAAAGAAATACAACCTCAGCTAGCCGAAGC
TGTGGACTGTCTCCTTTCTGATTTATCTGTCCAAGATAAGATTTCAGTAA
ATTACACCAACTCCCGACGTCCAAAGCAACGTCAAACGTTT
Run BLAST on NCBI

protein sequence of TCONS_00003063-protein

>TCONS_00003063-protein ID=TCONS_00003063-protein|Name=TCONS_00003063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
ENETITSFANWQSNIMYHLSLNNDFGQFLDSNWSKKSILNRGLQAVGDKT
PLQRNIILERMLALIAQFVPSLLRNDIVKKSTSLNWIWQRIRKHYSFAQS
EVNFLKLSNIKRDSDERYETFFQRIIANLEDNLLTVESGLIHDGAAPTAN
EEMSPTLERLAVYMWLTLIDERLPAHVSRVYAHDLQSKTLKEIQPQLAEA
VDCLLSDLSVQDKISVNYTNSRRPKQRQTF
Run BLAST on NCBI

transcript from alignment at sc0000024:918026..918716

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003063 ID=TCONS_00003063|Name=TCONS_00003063|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at sc0000024:918026..918716 (Clytia hemisphaerica)
AAACGTTTGACGTTGCTTTGGACGTCGGGAGTTGGTGTAATTTACTGAAA
TCTTATCTTGGACAGATAAATCAGAAAGGAGACAGTCCACAGCTTCGGCT
AGCTGAGGTTGTATTTCTTTAAGAGTCTTTGATTGTAGGTCGTGGGCGTA
AACTCTCGAAACATGTGCTGGGAGGCGTTCGTCTATTAACGTTAACCACA
TATATACTGCTAAGCGTTCTAGTGTTGGTGACATTTCTTCATTAGCTGTT
GGTGCAGCGCCATCGTGAATTAAACCTGATTCCACAGTGAGGAGGTTGTC
CTCCAAGTTGGCAATAATCCTTTGGAAGAATGTCTCATAACGTTCATCGC
TGTCACGTTTAATATTTGAAAGCTTAAGGAAGTTCACTTCTGATTGGGCG
AACGAATAATGTTTACGGATGCGTTGCCATATCCAGTTGAGACTGGTGCT
TTTCTTGACGATATCGTTCCTGAGTAGCGAAGGGACGAATTGGGCGATGA
GTGCAAGCATGCGTTCTAAAATGATATTCCTTTGGAGAGGTGTTTTGTCT
CCTACAGCTTGCAAACCACGGTTCAGTATGGATTTTTTAGACCAATTTGA
ATCTAAAAATTGGCCGAAATCATTGTTTAATGAAAGGTGGTACATAATGT
TCGATTGCCAATTGGCAAAGCTAGTAATTGTCTCATTTTCT

Coding sequence (CDS) from alignment at sc0000024:918026..918716

>TCONS_00003063 ID=TCONS_00003063|Name=TCONS_00003063|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000024:918026..918716 (Clytia hemisphaerica)
AAACGTTTGACGTTGCTTTGGACGTCGGGAGTTGGTGTAATTTACTGAAA
TCTTATCTTGGACAGATAAATCAGAAAGGAGACAGTCCACAGCTTCGGCT
AGCTGAGGTTGTATTTCTTTAAGAGTCTTTGATTGTAGGTCGTGGGCGTA
AACTCTCGAAACATGTGCTGGGAGGCGTTCGTCTATTAACGTTAACCACA
TATATACTGCTAAGCGTTCTAGTGTTGGTGACATTTCTTCATTAGCTGTT
GGTGCAGCGCCATCGTGAATTAAACCTGATTCCACAGTGAGGAGGTTGTC
CTCCAAGTTGGCAATAATCCTTTGGAAGAATGTCTCATAACGTTCATCGC
TGTCACGTTTAATATTTGAAAGCTTAAGGAAGTTCACTTCTGATTGGGCG
AACGAATAATGTTTACGGATGCGTTGCCATATCCAGTTGAGACTGGTGCT
TTTCTTGACGATATCGTTCCTGAGTAGCGAAGGGACGAATTGGGCGATGA
GTGCAAGCATGCGTTCTAAAATGATATTCCTTTGGAGAGGTGTTTTGTCT
CCTACAGCTTGCAAACCACGGTTCAGTATGGATTTTTTAGACCAATTTGA
ATCTAAAAATTGGCCGAAATCATTGTTTAATGAAAGGTGGTACATAATGT
TCGATTGCCAATTGGCAAAGCTAGTAATTGTCTCATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001694XLOC_001694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003063-exon-sc0000024-1491911889:918026..918716TCONS_00003063-exon-sc0000024-1491911889:918026..918716Clytia hemisphaericaexon
TCONS_00003063-exon-sc0000024-1510915933:918026..918716TCONS_00003063-exon-sc0000024-1510915933:918026..918716Clytia hemisphaericaexon
TCONS_00003063-exon-sc0000024-1575043694:918026..918716TCONS_00003063-exon-sc0000024-1575043694:918026..918716Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003063-proteinTCONS_00003063-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:918026..918716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.220816	0.502437	0.185666	0.277416	0.152694	0.113616	0.125209	0.35437	0.0871217	0.614631	0	0.243372	0.280825	0.467053	0.357733	0.652263	0.49205	0.480212	0.468044	0.564089	0.539993	0.861312	0.564718	0.682238	0	0.0705295	0.795639	0.386788	0.314896	0.710687
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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