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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003075 ID=TCONS_00003075|Name=TCONS_00003075|organism=Clytia hemisphaerica|type=transcript|length=5280bp
cactCATGTACAAAGATAAACAAGCTCATCCAGTATAACCAATGACATGA
GCCCTCCCCAATGGGAAATGGATCCTACTCCTTGTgtaggaattcctcct
ttttTCAATTCGAAACGCTTAGCAATGTCCAGACACTGCTAGTTCTGTGC
ATGTGAGACACAGATACCATGATGCATAGTGCAGTGCCAAACAAGACGAG
TGAAAATTTCTGCttgagtaattagttattcagaAGACTGTCACGTTCTC
CCAAACGACTTGCCTTAAtaccaaaaaatacaaaatacaaaaatgttaTT
ACTTTTTCCCAGTGGTGTAACATAATTTTTTGTAGcaaaagtattttatg
tttttcatgattttaatACACCTATCTGTTGGGCAGGGTACAGAGACTGA
CGCGTTTGGAACTTTTATGACCTGTTCAAACTGAATGAAGAATAAAAATA
CATTgttttaatctcaaaaaaattaagaataatgacaaattttagtctga
gaaaaaattgaaaaaagtgacaaaagtTGATCatccaaaaattgagaaaa
attgacaaatcttaatctcaaaaaattgaaaaaaatgacgaaTCTCACAT
ACTGAAAGATTGACAAAGACTGACCAAAATGAGTGGAAAAATTGGCTAGA
AATTTCtccctaaaaatgtaaaaaaaaatattcatttcaaaaatttcata
accTAATCTTAACCTAGGGAGACACGATGCCTGAGCCCAGATGGCTGGTG
AAAAACACGAAAGAATGAACGAGTGAGAAACAAGAAGGAAACCTACCAGG
TAGCCAGTAAATGATAGCTGCGTTgcccaaaaatgacaaaaattgacGAT
TGAAAAATCAGTTGAAAATTGAATTCCATAactctaaaataatttttctt
ttactttgaaCCTCACATCTCTCTTAGTAAGGAACAAGTGAGCTCCTTGA
AAAAAAGTGTcttgaatttgataaaaaactgataaaaaatgaacaaaaga
ttacataatgaaacaatagaaaaataataacaacgCACGCATTGGACATA
AAAATAAGATGcataaaaaattaattgaaagcAGAAGCTAATGAACGCAA
AACACTGAAGTGACACTGAAGCCATGGAAACAGAAGACTGTGAAATGAGA
CGCTGTGGCTATAGGGACTgagaaattttttggttttattgaaaatttac
taaaaatacATCAGAGCCACCAAGCTCGCATTACACTATCTACCCTTAGC
AATGTGGTCAGCTTTTCAGGGGACTGGTAATTAATTTACAAGAAACATTC
TGTTCTCGGCAAAAAGCATTTTTAGGCTACACTAAATCAAACCAAgaaaa
ttcctgctaaaactcTAGTGGCATTTTCCTACCTATCAAATCTCTGCGGT
AGAGTGCAAACTATTCTTAGCATTTGACTTCAACTATATGTTAGTCTATC
ACTTCAATACAAGGGTATCTTAATTACTTCACaagataccgtcaactgct
ccaacttgggactatcttacgcaacatgtggggggccattccaccaccat
ttcaccaaacctccaaagtcatttgatttgagttcaaTGAAccacgtatt
aaaaaatacacgatttctctttcacaccgagtaggcttttaaatcgaaat
atgaaaaaaatccgtagtggaaaaCACACGCGAATTTGAGAgtatgacgt
cactcgcgcggcaagttacacagtCGCTATTTGTTAATCTCATCGGGCTG
TGGGCGGTGGGCGAAGTGTAACAGTAAGTGTAAATACAGGcaagatatca
acaagtcccatgttgcatACACttgtcccaagttggagcagttgacggta
gcaaGGGCACTCCCTACGCTTAGTGTTTTTGATACAATTGTCATGAagtt
tttccttgtatttttgTTACCAATCTCTTAAAAAGTACTGATGTTTGATA
GGTGTATACCCTTGAGAAACCATCATCAATTCTTTAGGCTATCATAGATA
TGTGCTATAATCTATTTTAACACATCATTCACATTAAATTGAGAGTGATT
TCTTACTAAGGGGCCAGAAAACCGTGGTCTGCAAAATAGCTAGTTTTTTC
GGGAATTGAAAAATTGGTGTCTTCATTCTTTAATTTCGATCAATTATCAA
TTCTTATTCATTCAGTTTCAACtatgaataaaatttcaactttttctttt
tcatataaaagaaaaatcataaatGCAAGCGAAAGGCTGTGGGATGCATT
TAAAGTTATGTACTAACTCTTGAAATAACTCAACATTACTTCGTGTGAGG
TCCTCCGAGGAAGGGCCTAATTCCAGATGCAAAAGGAAAGCAGAAAAATC
CTAAGAAGTGTCACAAAAATCTCAACTTTCAACTTTGAAGCCGCATAGGT
CAAGTTTGCGACGTCGTAGATCTAGCCCCGACCTATGGTTGGGTCTGCAA
TTTATCTGGCTTTCAGGAAAACCCAAATGGCAATTTCCCTATCGAATATA
ACTGCTGCAGTTTTGAATTTAGTGAAACCCCTACCTGGCCAACCAATAGA
AGCTTTGTTCGaataatttgttaaaattacagaccagaccaAAATTGCTG
AAAACTTGTCGTGATTGGCTTATTTGCGATAAATCGATGATTCTGATTGG
CTTAGAAAAAATCGATGTCGTAAAAAAAAGGAGGCGGTGGAGTGAAAAta
caaattttgaatgaatctttccactttttgataaaaaatcccCTCAAAAt
cctttttccaagcaaagaaaTATTCAGCTTAGGACTCAGACTAAGACTGA
AAATTATCAAAGATATGCAATAACAATTGTGGTAagtgtgaaatcaagtg
cgGATTACTTAtaggtaatgaatcaacggatcctgcactaatgtacttcc
cagttttctcaatGGTAACATTCGAGTGCgaattgaacccacaacctctt
gTTTGCCTGGCAATTGCTCTCCCAACTGCGCTATCGGTTCGTTGCCATTA
CACTAGTTCGTAGTAGACGAGGGGAGTGACGTGCTCAATGTTCACCATCC
GGTACCTGAATCCTACGAATCAATGGAATTGCTACGAACTGAGACAAGTG
GTAAGGGATGGAgtcaaatttaaaagaaatcaaactatttcataaaaatt
atttatcaaaaatcatAAAGGTGGGTTCAAAGCTCACCAAGTCACATTGT
GTCACATCTCAGTTTGTAAGCCTAATAATATTTCAATAAGCAGTGtccta
aaaatgaaacaaaggaaaatcAATCCAAGAATGTTCAGCTTGACAGATCT
CTTCCTGTGAACAGTTATGAACGCTGAGAAAGGCTCAAGTGAGAAGAACT
CTACAAAGAGGAGGGTAACCAGAGAGGAGACAGGGGTGGTTGGTTGGTTA
GTAGCAATATTTCTGGAAGGAAGTTTTCCCATtgaaatattgtaaatttt
taaaGGAGGATTTTGATGTGAGCTGGACAGCAATCAATcggtttttcctt
tttccacCTCAAAGATTTATTGGAAAGGAAGTAGGAGAATAATAGACATA
AAGATATAACTTTCTGTAAAAAGAATACTCTCAGTACTCTGATGATAACA
ACCATAAAAGGGGTTcacaaaatttttgagaaaaacaatagagcaaaaaa
tgcaaagaaaCTGAGACTATATATTTTATAAAGCCTTGCTTACCTTCTTG
TATCAACAAAATAATTTCCAAACCAAAGGGCACCATTACAATCATTTCTT
CCTTTTCCAACAGTCTTGATTCGTTGATGTGGgttgaatttcttctttta
cttCTTTTTCCTTGCTTGAGTAGCCAACCAAATATCGAAAAAATCTATAT
CGAGCTGCAGAGATCCACCTAAAACTTATTTGAACCAATAACAAAAATTT
GAACGCAGAAAACTGAGGTTACGAAGTCTTTCTCTTTCTCATTATTGAGA
GATATTTTAAATGGAATCTTGCAGCAGAACAATGCTCTTGGTTTATTAAG
GTCAAGATAGATTGAATGATAAACCATAACTTCGATTAAATACAAAGGCA
TCTTTCAAACAAAGAAACTTTGAGTGACCTGCTAAGAAAAGTCTCCCACC
CCTTTGctttgttgaaaaaatgaagtggACTTCGAGAAATGTCCATACAA
AATATTTCCAAGACCGTCCAGATTGCTCACACGTACCAAATTAAAATCGT
GTGTTCGATGATAAACATTTGAATCTTAAAAAGCTAATTTACATGgcgaa
aaagagaaaaattgaaacaaggcTCTATTTATACTCGTGCGcagagaaaa
acaaaatcttttgaaaaatcatgTCCTTAGACAACttgagaaaacatttt
tcttgtATAATATAAGGCAgctttcgaaaaattgttctgttcacATCCCA
GCGGTTGTTAAAAATATGTGCGTGCGGGTGGGTGGACGCTCGAAAAGATT
TCcgggtttttgaaaattgtGTTAAAAACCAATAATTCCTTCTGATATGG
GGAGGGGGCTGTATCTGTTGTGTTCTTGCTAATTATAGCTAAAATAATGC
TAATGCTAATTTATCAGTgttatttgtttatttgttcTGCGCGCAGAGAA
GAGCTAGAGAAAAAGGCTATACAATAAAAGCACAATTTGCTTTTACTGGA
CCAGATTTTTTCCCCCTTCTCTACATCGGAAAATTAGTGGAGAATATGAT
GCGGGTTGGCTGGGTGACgggaacagaacaattttttgatggctGCCTAA
ACTGTATCCCGGTTTCTGGTCTTTttccctgaagagagtagtagTAGACA
GTAGAATCTCAGTCTGCGAAGTGAAATCTACCAAAACGTATGACAACTAC
AAGACATTTATAAAACCTGAATACTGGAATACACTGGGTccaaagtctga
aaatcaaccAGAGATCTACAGCAGACACAGACTTCAAAAGCTAAAcacta
aaaaaaattctttgatggtAATGTTTGAAGTGAAAAACACTTGCCTATTA
GGCAAAACCTTCCCTCTCTATAATAAACTGAATGAACTTCTAACTAGCTA
TTATCTAGTAAGACAGCACAGCTCTAGAAATGGTCTgaatttattttatg
attttacaaTGGCATGAAATACCTGACTGCCTGAACCTGAGTCTGTGAGT
CCAACCTTGGTGTTCTCATCACTTTGGTTTTTATCCTCTCTCTTCTTGGT
CTTTTTATCTGTCAGTGACTGGTGTAGAGAGCACACTGAGCACGTCTGAG
CACTGAACTAAGCACTAGACTGGGACTGGC Run BLAST on NCBI transcript from alignment at sc0000025:74363..79777+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003075 ID=TCONS_00003075|Name=TCONS_00003075|organism=Clytia hemisphaerica|type=transcript|length=5415bp|location=Sequence derived from alignment at sc0000025:74363..79777+ (Clytia hemisphaerica)
cactCATGTACAAAGATAAACAAGCTCATCCAGTATAACCAATGACATGA
GCCCTCCCCAATGGGAAATGGATCCTACTCCTTGTgtaggaattcctcct
ttttTCAATTCGAAACGCTTAGCAATGTCCAGACACTGCTAGTTCTGTGC
ATGTGAGACACAGATACCATGATGCATAGTGCAGTGCCAAACAAGACGAG
TGAAAATTTCTGCttgagtaattagttattcagaAGACTGTCACGTTCTC
CCAAACGACTTGCCTTAAtaccaaaaaatacaaaatacaaaaatgttaTT
ACTTTTTCCCAGTGGTGTAACATAATTTTTTGTAGcaaaagtattttatg
tttttcatgattttaatACACCTATCTGTTGGGCAGGGTACAGAGACTGA
CGCGTTTGGAACTTTTATGACCTGTTCAAACTGAATGAAGAATAAAAATA
CATTgttttaatctcaaaaaaattaagaataatgacaaattttagtctga
gaaaaaattgaaaaaagtgacaaaagtTGATCatccaaaaattgagaaaa
attgacaaatcttaatctcaaaaaattgaaaaaaatgacgaaTCTCACAT
ACTGAAAGATTGACAAAGACTGACCAAAATGAGTGGAAAAATTGGCTAGA
AATTTCtccctaaaaatgtaaaaaaaaatattcatttcaaaaatttcata
accTAATCTTAACCTAGGGAGACACGATGCCTGAGCCCAGATGGCTGGTG
AAAAACACGAAAGAATGAACGAGTGAGAAACAAGAAGGAAACCTACCAGG
TAGCCAGTAAATGATAGCTGCGTTgcccaaaaatgacaaaaattgacGAT
TGAAAAATCAGTTGAAAATTGAATTCCATAactctaaaataatttttctt
ttactttgaaCCTCACATCTCTCTTAGTAAGGAACAAGTGAGCTCCTTGA
AAAAAAGTGTcttgaatttgataaaaaactgataaaaaatgaacaaaaga
ttacataatgaaacaatagaaaaataataacaacgCACGCATTGGACATA
AAAATAAGATGcataaaaaattaattgaaagcAGAAGCTAATGAACGCAA
AACACTGAAGTGACACTGAAGCCATGGAAACAGAAGACTGTGAAATGAGA
CGCTGTGGCTATAGGGACTgagaaattttttggttttattgaaaatttac
taaaaatacATCAGAGCCACCAAGCTCGCATTACACTATCTACCCTTAGC
AATGTGGTCAGCTTTTCAGGGGACTGGTAATTAATTTACAAGAAACATTC
TGTTCTCGGCAAAAAGCATTTTTAGGCTACACTAAATCAAACCAAgaaaa
ttcctgctaaaactcTAGTGGCATTTTCCTACCTATCAAATCTCTGCGGT
AGAGTGCAAACTATTCTTAGCATTTGACTTCAACTATATGTTAGTCTATC
ACTTCAATACAAGGGTATCTTAATTACTTCACaagataccgtcaactgct
ccaacttgggactatcttacgcaacatgtggggggccattccaccaccat
ttcaccaaacctccaaagtcatttgatttgagttcaaTGAAccacgtatt
aaaaaatacacgatttctctttcacaccgagtaggcttttaaatcgaaat
atgaaaaaaatccgtagtggaaaaCACACGCGAATTTGAGAgtatgacgt
cactcgcgcggcaagttacacagtCGCTATTTGTTAATCTCATCGGGCTG
TGGGCGGTGGGCGAAGTGTAACAGTAAGTGTAAATACAGGcaagatatca
acaagtcccatgttgcatACACttgtcccaagttggagcagttgacggta
gcaaGGGCACTCCCTACGCTTAGTGTTTTTGATACAATTGTCATGAagtt
tttccttgtatttttgTTACCAATCTCTTAAAAAGTACTGATGTTTGATA
GGTGTATACCCTTGAGAAACCATCATCAATTCTTTAGGCTATCATAGATA
TGTGCTATAATCTATTTTAACACATCATTCACATTAAATTGAGAGTGATT
TCTTACTAAGGGGCCAGAAAACCGTGGTCTGCAAAATAGCTAGTTTTTTC
GGGAATTGAAAAATTGGTGTCTTCATTCTTTAATTTCGATCAATTATCAA
TTCTTATTCATTCAGTTTCAACtatgaataaaatttcaactttttctttt
tcatataaaagaaaaatcataaatGCAAGCGAAAGGCTGTGGGATGCATT
TAAAGTTATGTACTAACTCTTGAAATAACTCAACATTACTTCGTGTGAGG
TCCTCCGAGGAAGGGGCTNGCATTTAAAGTTATGTACTAAAATCGTAGTT
TTTCGAAAACTACACGGGTTTGACCTTTGAGCaacttttgaaagtttatt
tttcttgaaataactCAACATTACTTTGTGTGAGGTCCTCCGAGGAAGGG
CCTAATTCCAGATGCAAAAGGAAAGCAGAAAAATCCTAAGAAGTGTCACA
AAAATCTCAACTTTCAACTTTGAAGCCGCATAGGTCAAGTTTGCGACGTC
GTAGATCTAGCCCCGACCTATGGTTGGGTCTGCAATTTATCTGGCTTTCA
GGAAAACCCAAATGGCAATTTCCCTATCGAATATAACTGCTGCAGTTTTG
AATTTAGTGAAACCCCTACCTGGCCAACCAATAGAAGCTTTGTTCGaata
atttgttaaaattacagaccagaccaAAATTGCTGAAAACTTGTCGTGAT
TGGCTTATTTGCGATAAATCGATGATTCTGATTGGCTTAGAAAAAATCGA
TGTCGTAAAAAAAAGGAGGCGGTGGAGTGAAAAtacaaattttgaatgaa
tctttccactttttgataaaaaatcccCTCAAAAtcctttttccaagcaa
agaaaTATTCAGCTTAGGACTCAGACTAAGACTGAAAATTATCAAAGATA
TGCAATAACAATTGTGGTAagtgtgaaatcaagtgcgGATTACTTAtagg
taatgaatcaacggatcctgcactaatgtacttcccagttttctcaatGG
TAACATTCGAGTGCgaattgaacccacaacctcttgTTTGCCTGGCAATT
GCTCTCCCAACTGCGCTATCGGTTCGTTGCCATTACACTAGTTCGTAGTA
GACGAGGGGAGTGACGTGCTCAATGTTCACCATCCGGTACCTGAATCCTA
CGAATCAATGGAATTGCTACGAACTGAGACAAGTGGTAAGGGATGGAgtc
aaatttaaaagaaatcaaactatttcataaaaattatttatcaaaaatca
tAAAGGTGGGTTCAAAGCTCACCAAGTCACATTGTGTCACATCTCAGTTT
GTAAGCCTAATAATATTTCAATAAGCAGTGtcctaaaaatgaaacaaagg
aaaatcAATCCAAGAATGTTCAGCTTGACAGATCTCTTCCTGTGAACAGT
TATGAACGCTGAGAAAGGCTCAAGTGAGAAGAACTCTACAAAGAGGAGGG
TAACCAGAGAGGAGACAGGGGTGGTTGGTTGGTTAGTAGCAATATTTCTG
GAAGGAAGTTTTCCCATtgaaatattgtaaatttttaaaGGAGGATTTTG
ATGTGAGCTGGACAGCAATCAATcggtttttcctttttccacCTCAAAGA
TTTATTGGAAAGGAAGTAGGAGAATAATAGACATAAAGATATAACTTTCT
GTAAAAAGAATACTCTCAGTACTCTGATGATAACAACCATAAAAGGGGTT
cacaaaatttttgagaaaaacaatagagcaaaaaatgcaaagaaaCTGAG
ACTATATATTTTATAAAGCCTTGCTTACCTTCTTGTATCAACAAAATAAT
TTCCAAACCAAAGGGCACCATTACAATCATTTCTTCCTTTTCCAACAGTC
TTGATTCGTTGATGTGGgttgaatttcttcttttacttCTTTTTCCTTGC
TTGAGTAGCCAACCAAATATCGAAAAAATCTATATCGAGCTGCAGAGATC
CACCTAAAACTTATTTGAACCAATAACAAAAATTTGAACGCAGAAAACTG
AGGTTACGAAGTCTTTCTCTTTCTCATTATTGAGAGATATTTTAAATGGA
ATCTTGCAGCAGAACAATGCTCTTGGTTTATTAAGGTCAAGATAGATTGA
ATGATAAACCATAACTTCGATTAAATACAAAGGCATCTTTCAAACAAAGA
AACTTTGAGTGACCTGCTAAGAAAAGTCTCCCACCCCTTTGctttgttga
aaaaatgaagtggACTTCGAGAAATGTCCATACAAAATATTTCCAAGACC
GTCCAGATTGCTCACACGTACCAAATTAAAATCGTGTGTTCGATGATAAA
CATTTGAATCTTAAAAAGCTAATTTACATGgcgaaaaagagaaaaattga
aacaaggcTCTATTTATACTCGTGCGcagagaaaaacaaaatcttttgaa
aaatcatgTCCTTAGACAACttgagaaaacatttttcttgtATAATATAA
GGCAgctttcgaaaaattgttctgttcacATCCCAGCGGTTGTTAAAAAT
ATGTGCGTGCGGGTGGGTGGACGCTCGAAAAGATTTCcgggtttttgaaa
attgtGTTAAAAACCAATAATTCCTTCTGATATGGGGAGGGGGCTGTATC
TGTTGTGTTCTTGCTAATTATAGCTAAAATAATGCTAATGCTAATTTATC
AGTgttatttgtttatttgttcTGCGCGCAGAGAAGAGCTAGAGAAAAAG
GCTATACAATAAAAGCACAATTTGCTTTTACTGGACCAGATTTTTTCCCC
CTTCTCTACATCGGAAAATTAGTGGAGAATATGATGCGGGTTGGCTGGGT
GACgggaacagaacaattttttgatggctGCCTAAACTGTATCCCGGTTT
CTGGTCTTTttccctgaagagagtagtagTAGACAGTAGAATCTCAGTCT
GCGAAGTGAAATCTACCAAAACGTATGACAACTACAAGACATTTATAAAA
CCTGAATACTGGAATACACTGGGTccaaagtctgaaaatcaaccAGAGAT
CTACAGCAGACACAGACTTCAAAAGCTAAAcactaaaaaaaattctttga
tggtAATGTTTGAAGTGAAAAACACTTGCCTATTAGGCAAAACCTTCCCT
CTCTATAATAAACTGAATGAACTTCTAACTAGCTATTATCTAGTAAGACA
GCACAGCTCTAGAAATGGTCTgaatttattttatgattttacaaTGGCAT
GAAATACCTGACTGCCTGAACCTGAGTCTGTGAGTCCAACCTTGGTGTTC
TCATCACTTTGGTTTTTATCCTCTCTCTTCTTGGTCTTTTTATCTGTCAG
TGACTGGTGTAGAGAGCACACTGAGCACGTCTGAGCACTGAACTAAGCAC
TAGACTGGGACTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003075-exon-sc0000025-1491911889:74363..76661 | TCONS_00003075-exon-sc0000025-1491911889:74363..76661 | Clytia hemisphaerica | exon |
| TCONS_00003075-exon-sc0000025-1510915933:74363..76661 | TCONS_00003075-exon-sc0000025-1510915933:74363..76661 | Clytia hemisphaerica | exon |
| TCONS_00003075-exon-sc0000025-1575043694:74363..76661 | TCONS_00003075-exon-sc0000025-1575043694:74363..76661 | Clytia hemisphaerica | exon |
| TCONS_00003075-exon-sc0000025-1491911889:76797..79777 | TCONS_00003075-exon-sc0000025-1491911889:76797..79777 | Clytia hemisphaerica | exon |
| TCONS_00003075-exon-sc0000025-1510915933:76797..79777 | TCONS_00003075-exon-sc0000025-1510915933:76797..79777 | Clytia hemisphaerica | exon |
| TCONS_00003075-exon-sc0000025-1575043694:76797..79777 | TCONS_00003075-exon-sc0000025-1575043694:76797..79777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:74363..79777 + |
Blast
The following BLAST results are available for this feature:
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