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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003086 ID=TCONS_00003086|Name=TCONS_00003086|organism=Clytia hemisphaerica|type=transcript|length=780bp
CTTGGGACAAACAAGAACCAAACACAACTTGaacacaaaaaaagaaaatt
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGCCGCTGCAGCCATTACCAACCCACCAATTACTGGTACCACA
CCACCACCAGTCGAATGTCCAAACTCCTTGTGCAAAGGAAAAGCTGATGG
AAACTTCGATTACTATTACTATGGTCAATACAGACGTAACTACTTTGTCC
AATGTTCCGGAGGATTGGCTTACTGCCAAGCTTGTTTCCCACTCTCTTTG
GAATTCAGCGAAAAATGCAACCAATGTTTGTACAGCAAACACGACGATTG
TGTCACCACACAAAAATGGCACCCAGCCACCACCTTCTCCTGTCCAGACA
AATGCCCCCATTACGGACCCCACTTCAGTGGAAACGTTGAAGACCCAGCT
AATGACCGTCAATACGTTGCCTGCTGGAAGGGAGTTACTGTTGGATGCAT
CGCCTGTCCAGGAAACTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGT
ACGAGGGCAAATACCTCACCGAGCCATCCCATTAAATTTTGTGCTCAAAA
GTCAAGAATGGAAATACATTTTCCGTTAAAAgcgaaagaaataaaaacga
aacttgtaattatttttacatacaATTTTAATTTATCTTTCTTTATCTTT
CTTAGCCTTTCTTATCTTTCTTAGCCTTTCTATTCTTTAGCTTAGCTATT
TTCTTTCTACTTTGTAATTTTCTACTGCAT Run BLAST on NCBI protein sequence of TCONS_00003086-protein >TCONS_00003086-protein ID=TCONS_00003086-protein|Name=TCONS_00003086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
LGTNKNQTQLEHKKRKFSFTFQTYKMKCIIAFALVAAAAAITNPPITGTT
PPPVECPNSLCKGKADGNFDYYYYGQYRRNYFVQCSGGLAYCQACFPLSL
EFSEKCNQCLYSKHDDCVTTQKWHPATTFSCPDKCPHYGPHFSGNVEDPA
NDRQYVACWKGVTVGCIACPGNLKFNQKENACLYEGKYLTEPSH Run BLAST on NCBI transcript from alignment at sc0000025:168522..169581+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003086 ID=TCONS_00003086|Name=TCONS_00003086|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at sc0000025:168522..169581+ (Clytia hemisphaerica)
CTTGGGACAAACAAGAACCAAACACAACTTGaacacaaaaaaagaaaatt
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGGTAAGttcaaatgaaatatttttctattcttCAATTTCCTT
CTTGGTTTCTATAAGATTTTCCTTGCTCCTTATTATTTCACGAAGTTATT
GTAATCAATTGAACACAACTACAGTTTCTTACTAAGACGATCACTAGTTT
GTTATAGTCAGATTTCGTTCTAAACCAAAGTGTGACCGAACATCACCAAA
ACGATATGAAGATCTAGCTTATTTGTATATTCACTGTACTGTCGTGAGTC
TAGACCTTATTATTTAAAATTGTTCGTTTCGCCTTATAGCCGCTGCAGCC
ATTACCAACCCACCAATTACTGGTACCACACCACCACCAGTCGAATGTCC
AAACTCCTTGTGCAAAGGAAAAGCTGATGGAAACTTCGATTACTATTACT
ATGGTCAATACAGACGTAACTACTTTGTCCAATGTTCCGGAGGATTGGCT
TACTGCCAAGCTTGTTTCCCACTCTCTTTGGAATTCAGCGAAAAATGCAA
CCAATGTTTGTACAGCAAACACGACGATTGTGTCACCACACAAAAATGGC
ACCCAGCCACCACCTTCTCCTGTCCAGACAAATGCCCCCATTACGGACCC
CACTTCAGTGGAAACGTTGAAGACCCAGCTAATGACCGTCAATACGTTGC
CTGCTGGAAGGGAGTTACTGTTGGATGCATCGCCTGTCCAGGAAACTTGA
AATTCAACCAAAAAGAAAATGCTTGCTTGTACGAGGGCAAATACCTCACC
GAGCCATCCCATTAAATTTTGTGCTCAAAAGTCAAGAATGGAAATACATT
TTCCGTTAAAAgcgaaagaaataaaaacgaaacttgtaattatttttaca
tacaATTTTAATTTATCTTTCTTTATCTTTCTTAGCCTTTCTTATCTTTC
TTAGCCTTTCTATTCTTTAGCTTAGCTATTTTCTTTCTACTTTGTAATTT
TCTACTGCAT Coding sequence (CDS) from alignment at sc0000025:168522..169581+ >TCONS_00003086 ID=TCONS_00003086|Name=TCONS_00003086|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000025:168522..169581+ (Clytia hemisphaerica)
CTTGGGACAAACAAGAACCAAACACAACTTGaacacaaaaaaagaaaatt
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGCCGCTGCAGCCATTACCAACCCACCAATTACTGGTACCACA
CCACCACCAGTCGAATGTCCAAACTCCTTGTGCAAAGGAAAAGCTGATGG
AAACTTCGATTACTATTACTATGGTCAATACAGACGTAACTACTTTGTCC
AATGTTCCGGAGGATTGGCTTACTGCCAAGCTTGTTTCCCACTCTCTTTG
GAATTCAGCGAAAAATGCAACCAATGTTTGTACAGCAAACACGACGATTG
TGTCACCACACAAAAATGGCACCCAGCCACCACCTTCTCCTGTCCAGACA
AATGCCCCCATTACGGACCCCACTTCAGTGGAAACGTTGAAGACCCAGCT
AATGACCGTCAATACGTTGCCTGCTGGAAGGGAGTTACTGTTGGATGCAT
CGCCTGTCCAGGAAACTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGT
ACGAGGGCAAATACCTCACCGAGCCATCCCATTAACTTGGGACAAACAAG
AACCAAACACAACTTGaacacaaaaaaagaaaattttcttttacttttca
aacATACAAGATGAAGTGTATCATTGCTTTCGCCCTTGTCGCTGCCGCTG
CAGCCATTACCAACCCACCAATTACTGGTACCACACCACCACCAGTCGAA
TGTCCAAACTCCTTGTGCAAAGGAAAAGCTGATGGAAACTTCGATTACTA
TTACTATGGTCAATACAGACGTAACTACTTTGTCCAATGTTCCGGAGGAT
TGGCTTACTGCCAAGCTTGTTTCCCACTCTCTTTGGAATTCAGCGAAAAA
TGCAACCAATGTTTGTACAGCAAACACGACGATTGTGTCACCACACAAAA
ATGGCACCCAGCCACCACCTTCTCCTGTCCAGACAAATGCCCCCATTACG
GACCCCACTTCAGTGGAAACGTTGAAGACCCAGCTAATGACCGTCAATAC
GTTGCCTGCTGGAAGGGAGTTACTGTTGGATGCATCGCCTGTCCAGGAAA
CTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGTACGAGGGCAAATACC
TCACCGAGCCATCCCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003086-exon-sc0000025-1491911889:168522..168630 | TCONS_00003086-exon-sc0000025-1491911889:168522..168630 | Clytia hemisphaerica | exon |
| TCONS_00003086-exon-sc0000025-1510915933:168522..168630 | TCONS_00003086-exon-sc0000025-1510915933:168522..168630 | Clytia hemisphaerica | exon |
| TCONS_00003086-exon-sc0000025-1575043694:168522..168630 | TCONS_00003086-exon-sc0000025-1575043694:168522..168630 | Clytia hemisphaerica | exon |
| TCONS_00003086-exon-sc0000025-1491911889:168911..169581 | TCONS_00003086-exon-sc0000025-1491911889:168911..169581 | Clytia hemisphaerica | exon |
| TCONS_00003086-exon-sc0000025-1510915933:168911..169581 | TCONS_00003086-exon-sc0000025-1510915933:168911..169581 | Clytia hemisphaerica | exon |
| TCONS_00003086-exon-sc0000025-1575043694:168911..169581 | TCONS_00003086-exon-sc0000025-1575043694:168911..169581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:168522..169581 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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