|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003089 ID=TCONS_00003089|Name=TCONS_00003089|organism=Clytia hemisphaerica|type=transcript|length=582bp
CTTGGGACAAACAAGAACCAAACACaacttgaacaaaaaaaaagaaaatc
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGCCGCTGCAGCCATTACCAACCCACCAATCACTGGTACCACA
CCACCACCAGTCGAATGTCCAAACTCCTTGTGTAAAGGAAAAGCTGATGG
AAACTTCGATTACTACTACTATGGTCAATACAGACGTAACTACTTTGTCC
AATGCTCCGGTGGATTGGCTTACTGTCAAGCTTGTTTCCCACTCTCTTTG
GAATTCAGCGAAAAATGCAACCAATGTTTGTACAGCAAACACGACGATTG
TGTCACCACACAAAAATGGCACCCAGCCACCACCTTCTCCTGTCCAGACA
AATGCCCCCATTACGGACCCCACTTCAGTGGAAACGTTGAAGACCCAGCT
AATGACCGTCAATACGTTGCCTGCTGGAAGGGAGTTACTGTTGGATGCAT
CGCCTGTCCAGGAAACTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGT
ACGAGGGCAAATACCTCACCGAGCCATCCCAA Run BLAST on NCBI transcript from alignment at sc0000025:173880..174895+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003089 ID=TCONS_00003089|Name=TCONS_00003089|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at sc0000025:173880..174895+ (Clytia hemisphaerica)
CTTGGGACAAACAAGAACCAAACACaacttgaacaaaaaaaaagaaaatc
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGGTAAgttcaaataaaatatttttctatttcgATAAGATTCT
TCTTGCTTCTTGCTATCTATAAGCTCACTTTTCATAGGCAGTCACTCAAT
CAGGACGACCGTTAGTTGGTGGTTTGGTTTCGTTCTTCACTAAAATGTGG
CTTAAATTACTAAGGCAGTATTCTTATTCAAGCCACTTTACTGACAATAA
TTgacaatgtttttttatattagaccaaattatataagaacataaagaaa
catggccaaaatgtttaagttaagaacattttaaggctttgtggactcta
aacggccaatttctttcttttttaatggacagaaatgttcacaaaatggt
gaaaatttttcttaggcttaaaactcaaaaacttaggaacatccgaaggc
ttcaaaagtttttttatttaaaattgttcGTTTCGCCTTATAGCCGCTGC
AGCCATTACCAACCCACCAATCACTGGTACCACACCACCACCAGTCGAAT
GTCCAAACTCCTTGTGTAAAGGAAAAGCTGATGGAAACTTCGATTACTAC
TACTATGGTCAATACAGACGTAACTACTTTGTCCAATGCTCCGGTGGATT
GGCTTACTGTCAAGCTTGTTTCCCACTCTCTTTGGAATTCAGCGAAAAAT
GCAACCAATGTTTGTACAGCAAACACGACGATTGTGTCACCACACAAAAA
TGGCACCCAGCCACCACCTTCTCCTGTCCAGACAAATGCCCCCATTACGG
ACCCCACTTCAGTGGAAACGTTGAAGACCCAGCTAATGACCGTCAATACG
TTGCCTGCTGGAAGGGAGTTACTGTTGGATGCATCGCCTGTCCAGGAAAC
TTGAAATTCAACCAAAAAGAAAATGCTTGCTTGTACGAGGGCAAATACCT
CACCGAGCCATCCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003089-exon-sc0000025-1491911889:173880..173988 | TCONS_00003089-exon-sc0000025-1491911889:173880..173988 | Clytia hemisphaerica | exon |
| TCONS_00003089-exon-sc0000025-1510915933:173880..173988 | TCONS_00003089-exon-sc0000025-1510915933:173880..173988 | Clytia hemisphaerica | exon |
| TCONS_00003089-exon-sc0000025-1575043694:173880..173988 | TCONS_00003089-exon-sc0000025-1575043694:173880..173988 | Clytia hemisphaerica | exon |
| TCONS_00003089-exon-sc0000025-1491911889:174423..174895 | TCONS_00003089-exon-sc0000025-1491911889:174423..174895 | Clytia hemisphaerica | exon |
| TCONS_00003089-exon-sc0000025-1510915933:174423..174895 | TCONS_00003089-exon-sc0000025-1510915933:174423..174895 | Clytia hemisphaerica | exon |
| TCONS_00003089-exon-sc0000025-1575043694:174423..174895 | TCONS_00003089-exon-sc0000025-1575043694:174423..174895 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:173880..174895 + |
Blast
The following BLAST results are available for this feature:
|
