TCONS_00003094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003094
Unique NameTCONS_00003094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003094 ID=TCONS_00003094|Name=TCONS_00003094|organism=Clytia hemisphaerica|type=transcript|length=1466bp
AACaggttaaaaaataaaaaattcaaaacaatataatattaagCATGGAG
ATCCAAAATGCTAATCCAACGGTGTACGAGAAAGCGAAATTGAGAAACAT
CACagctgaagaagaagatgaagaagtcAACGATCCTATTGATTCTCGAG
AAATTTTTGATATCATTCGTAATATCAATGACCCTGAACATCCGTTAACT
TTGGAACAGTTGAATGTGGTGGAGGAGAAGAATATTGATGTGGATGATGA
CAAGAGTTATTTGAAGATCATGTTCACACCTACTATCCCTCACTGTAGTA
TGGCCACACTGATTGGTCTATCCATCAGAGTTCTTTTGTTGAGATCATTG
CCAACTCGGTATAAGGTCGATGTTTTGATCTCTCCAGGGACACATGTTTC
GGAGCTGGCTGtgAACAAACAACTAGCAGACAAAGAAAGAGTTGCTGCTG
CTTTGGAGAATGTTCATCTTTTGAATGTCATCAATCAATGTCTGGCCATT
GATAagaattaagtttttcaaaagtttgataacAAAGTGTTGTAGATAAT
GGTTGATGTATCTAACTGTAAATTGCGCATAATTCAATCTGGATGTAACA
CAGTGGGAACCCAACAAACAATACAATAGATTTACTTTAAAGATGGCGGA
TAAGAAATGTTTTGGTAGACTTGAAAGCAAATGGAATAACCAAGTCATAT
GATGGATTGTTATAGACAAAGACGTTAAAAAGATGacgaaaaggagaaaa
aaagatgacatttttatatttttaatggaaagccataaTAAATGACGAAT
ATTTTTGTCTAAAAAGCTTCGGCATTACAAAATAAATGCGAAATCtatat
tttgttcaaaattcaaatttcacttGATTCAAAGAGATCCTTGGTTCGGG
TTGCTATCTGGCTCCTTTCCCCCCTAAATGATAGATGTTTGGGGAATTTC
TTCCTTTATTTAATTAGTTCTCATCGGAGCACTCTCATAGcttgtttgat
tatttttattaaaatcccTCCTATTTTCATGTTTTGGCCTAAAACAAGCT
ATCATAAGCACACCTTAACAGCGTATAACCAATATGTGTTGTTAAGGATC
TCTTTTTTGCAAGATGcacgttttttcttataagaacataaaaaaaTTCG
GAAGCCTTCAGAtatattcttaaaatattcaatttcacCATTTCgtgaga
atttttcaaaaaattggatGTTCTCGAGTTCGCAAAGCGAACATTTTGAT
CATTAAAGACTTATTtgcttatatagtttgctcttatcaGAAACGATTAA
CGTTTCCTTTGGGGAAAAATGTGTCTTCCAGCTCAAAATTTGGATAAACT
TCACAATACAAATGATACTAAATGTAAATGACACTTTAAGCCAATATAAA
GAGAAGACTTGGAGACTTATTGAGACTTTAATAATAAATTGTAAATGCAG
GTTTGTATTATTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00003094-protein

>TCONS_00003094-protein ID=TCONS_00003094-protein|Name=TCONS_00003094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MEIQNANPTVYEKAKLRNITAEEEDEEVNDPIDSREIFDIIRNINDPEHP
LTLEQLNVVEEKNIDVDDDKSYLKIMFTPTIPHCSMATLIGLSIRVLLLR
SLPTRYKVDVLISPGTHVSELAVNKQLADKERVAAALENVHLLNVINQCL
AIDKN
Run BLAST on NCBI

transcript from alignment at sc0000025:253238..257228+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003094 ID=TCONS_00003094|Name=TCONS_00003094|organism=Clytia hemisphaerica|type=transcript|length=3991bp|location=Sequence derived from alignment at sc0000025:253238..257228+ (Clytia hemisphaerica)
AACaggttaaaaaataaaaaattcaaaacaatataatattaagCATGGAG
ATCCAAAATGCTAATCCAACGGTGTACGAGAAAGCGAAATTGAGAAACAT
CACagctgaagaagaagatgaagaagtcAACGATCCTATTGATTCTCGAG
AAATTTTTGATATCCTTTTCAGATGTTTTTCCCTTATGTTAAGCAACTAC
ATTTTTCTAATAGACTCTCTTAGCTATTTTAAGGTTCAAAGTACTATTAA
gcaatttttattaaaagtgaAAGCCTTAATGAGATCATTGAATTCCATTA
GTTTCTTTGAAAGATTCGAAACAACAGTTTAAGATTCGATTAAGCTAGCT
CGAATCAAAATCAGTCTTACAATAAATCAAGTAGAAAAACTTCTGTGCTG
ACCAATCGGGGGAGGGCGTCACCTACGTTCAaataaaaatgatcaaaatg
atcAAACCTCTTTCCATAAATTTGAAGAGAAAATGTGACTATTTCTCACT
AGCTTTAACcttttcagggtcttatttcaggctatttaaactttttaaag
agCAAAAATCGACACCTGCTTCACCAACAGTGAGAATTTTTTCTAAccca
aaattcacttttattGTTCTCCTTGACTAAAAAATCACATATCATTCGTA
ATATCAATGACCCTGAACATCCGTTAACTTTGGAACAGTTGAATGTGGTG
GAGGAGAAGAATATTGATGTGGATGATGACAAGAGTTATTTGAAGATCAT
GTTCACACCTACTATCCCTCACTGTAGTATGGCCACACTGATTGGTCTAT
CCATCAGAGTTCTTTTGTTGAGATCATTGCCAACTCGGTATAAGGtgaga
attttcaaagatgCACTCAATAAAAGTAGTGTGCACGACGTTTCATAAAA
Gagcatctaaaatttttgaagccttcagattttcttaactttttgaaatt
taagcctaaaaattgtCTTCGGCTGCTGTTATTTTCGACTGACTTTGTAA
CAACAAtgtgtattattttttttattttgcaataTATTTCGAACTTCGTT
CATCTTCAggctaaaaataaaagtaaaagcaAGTTAATactgttgaaatt
aaaaaaacatacaGACATTGATAAAAAAAGTTCTATATCTAACAACAGTC
TATACTCTCAACTCTCactaaataaaatacaaaaataatcatttcaattt
caaaaatgattccACATCTAGTGAATCCCAAAGTACTCTTAAGTTTTAAA
GGAATCAAAATTTAATTGCTAATCACCGACTTAAAGTAAAGATCAAGAAG
CtctttttcaccatttttctaGAATGTATTTTAGTGCAAATTCTTAAGGA
ACAGGGTTttctagagtctgcaaagccttaaaatgttctaaacttgttct
taatatttttgccatcgaatcATTATTAACGCACTTTGCGTGCATTTTTG
ATTTAAAGACTTTCTTAGATTCGGTGAAGGTTTCGAAAGAAATTTCATCg
gccatttttttaaaaactaattGGTTACTTGAACTCAAAATTTTCCTAAT
AATAAGGCATTGAGTTAATGTGGTAGCTAGTCAAGTGCCTCATTTTCCTC
AAAGTTTTCCTTTTTATACCAGGTCGATGTTTTGATCTCTCCAGGGACAC
ATGTTTCGGAGCTGGCTGGTatgatattattttttgaaattatttgtgca
aagtttttgaataagaaaagGCTTTTCCGAAAAGAAAATATAGATCGGAA
GAGAATCGGTTATGTAATAATATTATTTCAATGATTTATCCCTGGAAATT
TCTATTAATCAGCCCCCTCCCCTGAACATATATTAAGTGAATTCATGGAC
ATAAAAATTTTTTCCTGGTCATTGCAAATTCTTAGGAGTCTTTCTACCAA
CTGGGTTTGGCAATATGTACTCGAAACTCTTCAGGAATATATTCATTCTG
GAAGAGTCCACCCGGGgagggggcactgggtttgcggactgacggtatgc
gcgggccaaaaattggcttttaaaattgattgcacccttacagtgcagca
aaaatcagtgaaaatcatacccttagagtgcattttcccccaaattttcg
atccttttcgtgcaaaaaatggtcaaaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtcgatccctttcgtgcaaaaaatggtcaa
aattctagcatttttggtcaaaatatctagatttttcaagaattttctga
aatttctacccttacagtgcatatCTAgtttttcctacccttacagtgca
tttttaacatattggaaaaggtacccttaggacccgcacatacccgtcgg
tccttttgcccagctgcccccggGAGAGCCCACTATTCAAACATATCCTC
TCTATTTAATACAAATTTTTGTGTAGCTCTTTCCTATGTCACCCTTCTTT
TTAGGAGCTCCGTTAGAATCTTAAGTAGACAGTTTTCCATCTAAGACGct
tctattttctttttcttcagtgAACAAACAACTAGCAGACAAAGAAAGAG
TTGCTGCTGCTTTGGAGAATGTTCATCTTTTGAATGTCATCAATCAATGT
CTGGCCATTGATAagaattaagtttttcaaaagtttgataacAAAGTGTT
GTAGATAATGGTTGATGTATCTAACTGTAAATTGCGCATAATTCAATCTG
GATGTAACACAGGTTAtagtatattttttttgctgGCAGATATGGATTCT
GTTACTTATGCATTGCCTTCATTGCTAGATGTTTTGGTTCGGTTATCTCT
AAAACGGTGTTTCATTGTCCTTGAAATCATTATTACTAAATCAGACATAA
TATTTACCACCGTAGGAAATGATTGAGATGTTTTTTGGCTTTCGAAATTG
CTATTGGCACTtaatatttttagtttgaaatgGTATTGCTTTTGCAGAAA
GTTGTTCTTATTTCGATTTTGTTGTTAGTGGGAACCCAACAAACAATACA
ATAGATTTACTTTAAAGATGGCGGATAAGAAATGTTTTGGTAGACTTGAA
AGCAAATGGAATAACCAAGTCATATGATGGATTGTTATAGACAAAGACGT
TAAAAAGATGacgaaaaggagaaaaaaagatgacatttttatatttttaa
tggaaagccataaTAAATGACGAATATTTTTGTCTAAAAAGCTTCGGCAT
TACAAAATAAATGCGAAATCtatattttgttcaaaattcaaatttcactt
GATTCAAAGAGATCCTTGGTTCGGGTTGCTATCTGGCTCCTTTCCCCCCT
AAATGATAGATGTTTGGGGAATTTCTTCCTTTATTTAATTAGTTCTCATC
GGAGCACTCTCATAGcttgtttgattatttttattaaaatcccTCCTATT
TTCATGTTTTGGCCTAAAACAAGCTATCATAAGCACACCTTAACAGCGTA
TAACCAATATGTGTTGTTAAGGATCTCTTTTTTGCAAGATGcacgttttt
tcttataagaacataaaaaaaTTCGGAAGCCTTCAGAtatattcttaaaa
tattcaatttcacCATTTCgtgagaatttttcaaaaaattggatGTTCTC
GAGTTCGCAAAGCGAACATTTTGATCATTAAAGACTTATTtgcttatata
gtttgctcttatcaGAAACGATTAACGTTTCCTTTGGGGAAAAATGTGTC
TTCCAGCTCAAAATTTGGATAAACTTCACAATACAAATGATACTAAATGT
AAATGACACTTTAAGCCAATATAAAGAGAAGACTTGGAGACTTATTGAGA
CTTTAATAATAAATTGTAAATGCAGGTTTGTATTATTTCAG

Coding sequence (CDS) from alignment at sc0000025:253238..257228+

>TCONS_00003094 ID=TCONS_00003094|Name=TCONS_00003094|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000025:253238..257228+ (Clytia hemisphaerica)
ATGGAGATCCAAAATGCTAATCCAACGGTGTACGAGAAAGCGAAATTGAG
AAACATCACagctgaagaagaagatgaagaagtcAACGATCCTATTGATT
CTCGAGAAATTTTTGATATCATTCGTAATATCAATGACCCTGAACATCCG
TTAACTTTGGAACAGTTGAATGTGGTGGAGGAGAAGAATATTGATGTGGA
TGATGACAAGAGTTATTTGAAGATCATGTTCACACCTACTATCCCTCACT
GTAGTATGGCCACACTGATTGGTCTATCCATCAGAGTTCTTTTGTTGAGA
TCATTGCCAACTCGGTATAAGGTCGATGTTTTGATCTCTCCAGGGACACA
TGTTTCGGAGCTGGCTGtgAACAAACAACTAGCAGACAAAGAAAGAGTTG
CTGCTGCTTTGGAGAATGTTCATCTTTTGAATGTCATCAATCAATGTCTG
GCCATTGATAagaattaaATGGAGATCCAAAATGCTAATCCAACGGTGTA
CGAGAAAGCGAAATTGAGAAACATCACagctgaagaagaagatgaagaag
tcAACGATCCTATTGATTCTCGAGAAATTTTTGATATCATTCGTAATATC
AATGACCCTGAACATCCGTTAACTTTGGAACAGTTGAATGTGGTGGAGGA
GAAGAATATTGATGTGGATGATGACAAGAGTTATTTGAAGATCATGTTCA
CACCTACTATCCCTCACTGTAGTATGGCCACACTGATTGGTCTATCCATC
AGAGTTCTTTTGTTGAGATCATTGCCAACTCGGTATAAGGTCGATGTTTT
GATCTCTCCAGGGACACATGTTTCGGAGCTGGCTGtgAACAAACAACTAG
CAGACAAAGAAAGAGTTGCTGCTGCTTTGGAGAATGTTCATCTTTTGAAT
GTCATCAATCAATGTCTGGCCATTGATAagaattaaATGGAGATCCAAAA
TGCTAATCCAACGGTGTACGAGAAAGCGAAATTGAGAAACATCACagctg
aagaagaagatgaagaagtcAACGATCCTATTGATTCTCGAGAAATTTTT
GATATCATTCGTAATATCAATGACCCTGAACATCCGTTAACTTTGGAACA
GTTGAATGTGGTGGAGGAGAAGAATATTGATGTGGATGATGACAAGAGTT
ATTTGAAGATCATGTTCACACCTACTATCCCTCACTGTAGTATGGCCACA
CTGATTGGTCTATCCATCAGAGTTCTTTTGTTGAGATCATTGCCAACTCG
GTATAAGGTCGATGTTTTGATCTCTCCAGGGACACATGTTTCGGAGCTGG
CTGtgAACAAACAACTAGCAGACAAAGAAAGAGTTGCTGCTGCTTTGGAG
AATGTTCATCTTTTGAATGTCATCAATCAATGTCTGGCCATTGATAagaa
ttaaATGGAGATCCAAAATGCTAATCCAACGGTGTACGAGAAAGCGAAAT
TGAGAAACATCACagctgaagaagaagatgaagaagtcAACGATCCTATT
GATTCTCGAGAAATTTTTGATATCATTCGTAATATCAATGACCCTGAACA
TCCGTTAACTTTGGAACAGTTGAATGTGGTGGAGGAGAAGAATATTGATG
TGGATGATGACAAGAGTTATTTGAAGATCATGTTCACACCTACTATCCCT
CACTGTAGTATGGCCACACTGATTGGTCTATCCATCAGAGTTCTTTTGTT
GAGATCATTGCCAACTCGGTATAAGGTCGATGTTTTGATCTCTCCAGGGA
CACATGTTTCGGAGCTGGCTGtgAACAAACAACTAGCAGACAAAGAAAGA
GTTGCTGCTGCTTTGGAGAATGTTCATCTTTTGAATGTCATCAATCAATG
TCTGGCCATTGATAagaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001716XLOC_001716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003094-exon-sc0000025-1491911889:253238..253396TCONS_00003094-exon-sc0000025-1491911889:253238..253396Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1510915933:253238..253396TCONS_00003094-exon-sc0000025-1510915933:253238..253396Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1575043694:253238..253396TCONS_00003094-exon-sc0000025-1575043694:253238..253396Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1491911889:253876..254081TCONS_00003094-exon-sc0000025-1491911889:253876..254081Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1510915933:253876..254081TCONS_00003094-exon-sc0000025-1510915933:253876..254081Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1575043694:253876..254081TCONS_00003094-exon-sc0000025-1575043694:253876..254081Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1491911889:254860..254905TCONS_00003094-exon-sc0000025-1491911889:254860..254905Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1510915933:254860..254905TCONS_00003094-exon-sc0000025-1510915933:254860..254905Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1575043694:254860..254905TCONS_00003094-exon-sc0000025-1575043694:254860..254905Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1491911889:255908..256099TCONS_00003094-exon-sc0000025-1491911889:255908..256099Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1510915933:255908..256099TCONS_00003094-exon-sc0000025-1510915933:255908..256099Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1575043694:255908..256099TCONS_00003094-exon-sc0000025-1575043694:255908..256099Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1491911889:256366..257228TCONS_00003094-exon-sc0000025-1491911889:256366..257228Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1510915933:256366..257228TCONS_00003094-exon-sc0000025-1510915933:256366..257228Clytia hemisphaericaexon
TCONS_00003094-exon-sc0000025-1575043694:256366..257228TCONS_00003094-exon-sc0000025-1575043694:256366..257228Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003094-proteinTCONS_00003094-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:253238..257228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.39861	5.56882	6.93076	1.35309	0	0.294694	3.73804e-06	2.83434e-07	5.79559	4.45237	1.64984	4.20847	4.34747	4.02164	4.66471	7.31478	8.69361	13.6791	2.96786	5.91003	0.560635	2.56408	2.15349	4.76443	1.13927	3.65223e-06	8.70027	2.33297	6.10109	0.627048
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002744MIP18-like
IPR034904FSCA_dom
Blast
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BLAST of TCONS_00003094 vs. Swiss-Prot (Human)
Match: MIP18 (Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo sapiens GN=FAM96B PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.331e-69
Identity = 104/149 (69.80%), Postives = 127/149 (85.23%), Query Frame = 3 
Query:   51 IQNANPTVYEKAKLRNITAEEEDEEVNDPIDSREIFDIIRNINDPEHPLTLEQLNVVEEKNIDVDDDKSYLKIMFTPTIPHCSMATLIGLSIRVLLLRSLPTRYKVDVLISPGTHVSELAVNKQLADKERVAAALENVHLLNVINQCLA 497
            ++NANP +Y+++  R +TA EEDE+V D ID+REIFD+IR+INDPEHPLTLE+LNVVE+  + V D +S + + FTPTIPHCSMATLIGLSI+V LLRSLP R+K+DV I+PGTH SE AVNKQLADKERVAAALEN HLL V+NQCL+
Sbjct:   12 LENANPLIYQRSGERPVTAGEEDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLS 160
The following BLAST results are available for this feature:
BLAST of TCONS_00003094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIP189.331e-6969.80Mitotic spindle-associated MMXD complex subunit MI... [more]
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